Mechanosensing of shear by Pseudomonas aeruginosa leads to increased levels of the cyclic-di-GMP signal initiating biofilm development

Significance It is well established that mechanical inputs, such as strain and elasticity, can be sensed by eukaryotic cells and can impact phenotype and behavior. In contrast, very little is known about how prokaryotes may respond to mechanical inputs. Here, we show that bacteria can sense shear and can respond by initiating biofilms. This is an important advance in fundamental microbiology and mechanobiology. Biofilms are difficult to prevent using extant approaches. Our knowledge points the way to a hitherto-undeveloped type of antibiofilm surface that thwarts mechanosensing by not sustaining sufficiently high shear. This would prevent bacteria from sensing surface attachment, activating cyclic-di-GMP signaling, and forming a biofilm. Biofilms are communities of sessile microbes that are phenotypically distinct from their genetically identical, free-swimming counterparts. Biofilms initiate when bacteria attach to a solid surface. Attachment triggers intracellular signaling to change gene expression from the planktonic to the biofilm phenotype. For Pseudomonas aeruginosa, it has long been known that intracellular levels of the signal cyclic-di-GMP increase upon surface adhesion and that this is required to begin biofilm development. However, what cue is sensed to notify bacteria that they are attached to the surface has not been known. Here, we show that mechanical shear acts as a cue for surface adhesion and activates cyclic-di-GMP signaling. The magnitude of the shear force, and thereby the corresponding activation of cyclic-di-GMP signaling, can be adjusted both by varying the strength of the adhesion that binds bacteria to the surface and by varying the rate of fluid flow over surface-bound bacteria. We show that the envelope protein PilY1 and functional type IV pili are required mechanosensory elements. An analytic model that accounts for the feedback between mechanosensors, cyclic-di-GMP signaling, and production of adhesive polysaccharides describes our data well.

[1]  K. Otto,et al.  Surface sensing and adhesion of Escherichia coli controlled by the Cpx-signaling pathway , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Matthew R. Parsek,et al.  Assembly and Development of the Pseudomonas aeruginosa Biofilm Matrix , 2009, PLoS pathogens.

[3]  S. Busby,et al.  Host attachment and fluid shear are integrated into a mechanical signal regulating virulence in Escherichia coli O157:H7 , 2015, Proceedings of the National Academy of Sciences.

[4]  G. Jensen,et al.  Architecture of the type IVa pilus machine , 2016, Science.

[5]  D P Gaver,et al.  A theoretical model study of the influence of fluid stresses on a cell adhering to a microchannel wall. , 1998, Biophysical journal.

[6]  V. Burrus,et al.  Regulation of Type IV Pili Contributes to Surface Behaviors of Historical and Epidemic Strains of Clostridium difficile , 2015, Journal of bacteriology.

[7]  Zemer Gitai,et al.  Surface attachment induces Pseudomonas aeruginosa virulence , 2014, Proceedings of the National Academy of Sciences.

[8]  T. Tolker-Nielsen,et al.  Fluorescence-Based Reporter for Gauging Cyclic Di-GMP Levels in Pseudomonas aeruginosa , 2012, Applied and Environmental Microbiology.

[9]  J. Rabinowitz,et al.  Cyclic-di-GMP-Mediated Repression of Swarming Motility by Pseudomonas aeruginosa: the pilY1 Gene and Its Impact on Surface-Associated Behaviors , 2010, Journal of bacteriology.

[10]  H. C. van der Mei,et al.  Residence-time dependent cell wall deformation of different Staphylococcus aureus strains on gold measured using surface-enhanced-fluorescence. , 2014, Soft matter.

[11]  Mudita Singhal,et al.  COPASI - a COmplex PAthway SImulator , 2006, Bioinform..

[12]  Nathaniel C. Cady,et al.  Nano and Microscale Topographies for the Prevention of Bacterial Surface Fouling , 2014 .

[13]  Vernita Gordon,et al.  Bacteria Use Type IV Pili to Walk Upright and Detach from Surfaces , 2010, Science.

[14]  Manuel de Jesus Simões,et al.  The effect of shear stress on the formation and removal of Bacillus cereus biofilms , 2015 .

[15]  P. Cotter,et al.  c-di-GMP-mediated regulation of virulence and biofilm formation. , 2007, Current opinion in microbiology.

[16]  L. Petzold Automatic Selection of Methods for Solving Stiff and Nonstiff Systems of Ordinary Differential Equations , 1983 .

[17]  Numa Dhamani,et al.  Asymmetry and inequity in the inheritance of a bacterial adhesive , 2016 .

[18]  Oscar P. Kuipers,et al.  Phenotypic variation in bacteria: the role of feedback regulation , 2006, Nature Reviews Microbiology.

[19]  Michael P. Sheetz,et al.  Appreciating force and shape — the rise of mechanotransduction in cell biology , 2014, Nature Reviews Molecular Cell Biology.

[20]  Gerard C. L. Wong,et al.  Bacteria use type-IV pili to slingshot on surfaces , 2011, Proceedings of the National Academy of Sciences.

[21]  D. Tifrea,et al.  A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Michael P. Sheetz,et al.  Single pilus motor forces exceed 100 pN , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[23]  Joanna Aizenberg,et al.  Liquid-Infused Silicone As a Biofouling-Free Medical Material. , 2015, ACS biomaterials science & engineering.

[24]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[25]  Jan Lammerding,et al.  Mechanotransduction gone awry , 2009, Nature Reviews Molecular Cell Biology.

[26]  S. Molin,et al.  Distinct roles of extracellular polymeric substances in Pseudomonas aeruginosa biofilm development. , 2011, Environmental microbiology.

[27]  Yasuhiko Irie,et al.  Self-produced exopolysaccharide is a signal that stimulates biofilm formation in Pseudomonas aeruginosa , 2012, Proceedings of the National Academy of Sciences.

[28]  K. Burrage,et al.  Stochastic models for regulatory networks of the genetic toggle switch. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Gürol M. Süel,et al.  Circuit-level input integration in bacterial gene regulation , 2013, Proceedings of the National Academy of Sciences.

[30]  T. Lithgow,et al.  Emerging rules for effective antimicrobial coatings. , 2014, Trends in biotechnology.

[31]  Philip S. Stewart,et al.  Physiological heterogeneity in biofilms , 2008, Nature Reviews Microbiology.

[32]  A. Touhami,et al.  Nanoscale Characterization and Determination of Adhesion Forces of Pseudomonas aeruginosa Pili by Using Atomic Force Microscopy , 2006, Journal of bacteriology.

[33]  R. Hynes,et al.  Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. , 2002, Molecular biology of the cell.

[34]  H. Stone,et al.  Force generation by groups of migrating bacteria , 2017, Proceedings of the National Academy of Sciences.

[35]  Regine Hengge,et al.  Principles of c-di-GMP signalling in bacteria , 2009, Nature Reviews Microbiology.

[36]  H. Stone,et al.  Type IV pili mechanochemically regulate virulence factors in Pseudomonas aeruginosa , 2015, Proceedings of the National Academy of Sciences.

[37]  Howard C. Berg,et al.  Direct observation of extension and retraction of type IV pili , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[38]  Manuel de Jesus Simões,et al.  Influence of Flow Velocity on the Characteristics of Pseudomonas fluorescens Biofilms , 2016 .

[39]  Eric Haugen,et al.  Comprehensive transposon mutant library of Pseudomonas aeruginosa , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[40]  Matthias Christen,et al.  Asymmetrical Distribution of the Second Messenger c-di-GMP upon Bacterial Cell Division , 2010, Science.

[41]  B. Tribollet,et al.  Influence of the hydrodynamics on the biofilm formation by mass transport analysis. , 2001, Bioelectrochemistry.

[42]  E. Cox,et al.  Real-Time Kinetics of Gene Activity in Individual Bacteria , 2005, Cell.

[43]  G. O’Toole,et al.  A Hierarchical Cascade of Second Messengers Regulates Pseudomonas aeruginosa Surface Behaviors , 2015, mBio.

[44]  K. Sauer,et al.  Elevated levels of the second messenger c‐di‐GMP contribute to antimicrobial resistance of Pseudomonas aeruginosa , 2014, Molecular microbiology.

[45]  Andreas Dötsch,et al.  Constitutive production of c-di-GMP is associated with mutations in a variant of Pseudomonas aeruginosa with altered membrane composition , 2015, Science Signaling.

[46]  A. Filloux,et al.  Biofilms and cdi-GMP Signaling : Lessons from Pseudomonas aeruginosa and other Bacteria , 2016 .

[47]  S. Dowd,et al.  The Role of Biofilms: Are We Hitting the Right Target? , 2011, Plastic and reconstructive surgery.

[48]  J. Collins,et al.  Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.

[49]  A. Filloux,et al.  Biofilms and c-di-GMP Signaling: Lessons from Pseudomonas aeruginosa and other Bacteria , 2016 .

[50]  A. Touhami,et al.  The extracellular polysaccharide Pel makes the attachment of P. aeruginosa to surfaces symmetric and short-ranged. , 2013, Soft matter.

[51]  J. Whitfield,et al.  The solitary (primary) cilium--a mechanosensory toggle switch in bone and cartilage cells. , 2008, Cellular Signalling.

[52]  H. Stone,et al.  The Mechanical World of Bacteria , 2015, Cell.