Metabolic Flux Analysis: A Powerful Tool in Animal Cell Culture
暂无分享,去创建一个
João V. Sá | Tiago M. Duarte | Manuel J.T. Carrondo | Paula M. Alves | Ana P. Teixeira | A. Teixeira | P. Alves | M. Carrondo | T. M. Duarte | J. V. Sá
[1] Georges Bastin,et al. Dynamic metabolic modelling under the balanced growth condition , 2004 .
[2] E. Heinzle,et al. Metabolism and metabolic burden by α1-antitrypsin production in human AGE1.HN cells. , 2013, Metabolic engineering.
[3] Maciek R Antoniewicz,et al. Measuring complete isotopomer distribution of aspartate using gas chromatography/tandem mass spectrometry. , 2012, Analytical chemistry.
[4] Jamey D. Young,et al. Isotopically nonstationary 13C metabolic flux analysis. , 2013, Methods in molecular biology.
[5] Christian M. Metallo,et al. Erk regulation of pyruvate dehydrogenase flux through PDK4 modulates cell proliferation. , 2011, Genes & development.
[6] Craig R Malloy,et al. 13C isotopomer analysis of glutamate by tandem mass spectrometry. , 2002, Analytical biochemistry.
[7] W. Frommer,et al. Fluxomics: mass spectrometry versus quantitative imaging. , 2007, Current opinion in plant biology.
[8] J. Asenjo,et al. Viral vectors for the treatment of alcoholism: use of metabolic flux analysis for cell cultivation and vector production. , 2010, Metabolic engineering.
[9] H. Mulder,et al. 13C NMR isotopomer analysis reveals a connection between pyruvate cycling and glucose-stimulated insulin secretion (GSIS) , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[10] F Gòdia,et al. Strategies for fed-batch cultivation of t-PA producing CHO cells: substitution of glucose and glutamine and rational design of culture medium. , 2004, Journal of biotechnology.
[11] Thomas Gaj,et al. Expanding the scope of site‐specific recombinases for genetic and metabolic engineering , 2014, Biotechnology and bioengineering.
[12] Olivier Henry,et al. Probing the metabolism of an inducible mammalian expression system using extracellular isotopomer analysis. , 2013, Journal of biotechnology.
[13] H. Alper. Systems metabolic engineering : methods and protocols , 2013 .
[14] Jamey D. Young,et al. INCA: a computational platform for isotopically non-stationary metabolic flux analysis , 2014, Bioinform..
[15] Gregory Stephanopoulos,et al. Expanding the concepts and tools of metabolic engineering to elucidate cancer metabolism , 2012, Biotechnology progress.
[16] Miguel Rocha,et al. 13C-based metabolic flux analysis , 2012 .
[17] J. Villadsen,et al. Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices. , 1997, Biotechnology and bioengineering.
[18] T. Szyperski. Biosynthetically Directed Fractional 13C‐labeling of Proteinogenic Amino Acids , 1995 .
[19] Jesús Picó,et al. A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient , 2007, BMC Bioinformatics.
[20] Susann Müller,et al. From multi-omics to basic structures of biological systems. , 2013, Current opinion in biotechnology.
[21] Elmar Heinzle,et al. Metabolic flux analysis in eukaryotes. , 2010, Current opinion in biotechnology.
[22] Paula M Alves,et al. Metabolic signatures of GS‐CHO cell clones associated with butyrate treatment and culture phase transition , 2013, Biotechnology and bioengineering.
[23] James M Piret,et al. Error propagation from prime variables into specific rates and metabolic fluxes for mammalian cells in perfusion culture , 2009, Biotechnology progress.
[24] Gregory Stephanopoulos,et al. Measuring deuterium enrichment of glucose hydrogen atoms by gas chromatography/mass spectrometry. , 2011, Analytical chemistry.
[25] S. Srivastava,et al. Application of metabolic flux analysis to identify the mechanisms of free fatty acid toxicity to human hepatoma cell line , 2008, Biotechnology and bioengineering.
[26] Rui Oliveira,et al. Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products , 2011, BMC Systems Biology.
[27] Gleb Mironov,et al. Assessment of energetic costs of AhR activation by β-naphthoflavone in rainbow trout (Oncorhynchus mykiss) hepatocytes using metabolic flux analysis. , 2013, Toxicology and applied pharmacology.
[28] Alexander Bauer,et al. Quantification of statin effects on hepatic cholesterol synthesis by transient (13)C-flux analysis. , 2009, Metabolic engineering.
[29] W. Frommer,et al. GLUT1 and GLUT9 as major contributors to glucose influx in HepG2 cells identified by a high sensitivity intramolecular FRET glucose sensor. , 2008, Biochimica et biophysica acta.
[30] L. Looger,et al. Nanosensor Detection of an Immunoregulatory Tryptophan Influx/Kynurenine Efflux Cycle , 2007, PLoS biology.
[31] W Wiechert,et al. A universal framework for 13C metabolic flux analysis. , 2001, Metabolic engineering.
[32] Maciek R Antoniewicz,et al. Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis. , 2011, Biotechnology journal.
[33] Jamey D. Young,et al. Peak antibody production is associated with increased oxidative metabolism in an industrially relevant fed‐batch CHO cell culture , 2013, Biotechnology and bioengineering.
[34] B O Palsson,et al. Chemical Decomposition of Glutamine in Cell Culture Media: Effect of Media Type, pH, and Serum Concentration , 1990, Biotechnology progress.
[35] Ryan Nolan,et al. Dynamic model of CHO cell metabolism. , 2011, Metabolic engineering.
[36] G Stephanopoulos,et al. Metabolic flux analysis of hybridoma continuous culture steady state multiplicity. , 1999, Biotechnology and bioengineering.
[37] Jean-Charles Portais,et al. IsoDesign: a software for optimizing the design of 13C-metabolic flux analysis experiments. , 2014, Biotechnology and bioengineering.
[38] L. Quek,et al. Metabolic flux analysis in mammalian cell culture. , 2010, Metabolic engineering.
[39] Jean-Charles Portais,et al. IsoCor: correcting MS data in isotope labeling experiments , 2012, Bioinform..
[40] Jie Zhang,et al. Optimization of 13C isotopic tracers for metabolic flux analysis in mammalian cells. , 2012, Metabolic engineering.
[41] Maciek R Antoniewicz,et al. Tandem mass spectrometry: a novel approach for metabolic flux analysis. , 2011, Metabolic engineering.
[42] M. Antoniewicz,et al. Towards dynamic metabolic flux analysis in CHO cell cultures , 2012, Biotechnology journal.
[43] U. Sauer,et al. Article number: 62 REVIEW Metabolic networks in motion: 13 C-based flux analysis , 2022 .
[44] B. Pfeifer,et al. Metabolic flux analysis and pharmaceutical production. , 2010, Metabolic engineering.
[45] Alves,et al. Effects of ammonia and lactate on growth, metabolism, and productivity of BHK cells. , 2000, Enzyme and microbial technology.
[46] W. Wiechert. 13C metabolic flux analysis. , 2001, Metabolic engineering.
[47] W. Wiechert,et al. Bidirectional reaction steps in metabolic networks: III. Explicit solution and analysis of isotopomer labeling systems. , 1999, Biotechnology and bioengineering.
[48] Gregory Stephanopoulos,et al. Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements. , 2006, Metabolic engineering.
[49] I. Kola,et al. Can the pharmaceutical industry reduce attrition rates? , 2004, Nature Reviews Drug Discovery.
[50] J. Kramer,et al. The application of discovery toxicology and pathology towards the design of safer pharmaceutical lead candidates , 2007, Nature Reviews Drug Discovery.
[51] Y. Schneider,et al. Metabolic design of macroscopic bioreaction models: application to Chinese hamster ovary cells , 2006, Bioprocess and biosystems engineering.
[52] U. Sauer,et al. From biomarkers to integrated network responses , 2008, Nature Biotechnology.
[53] Gregory Stephanopoulos,et al. Quantifying Reductive Carboxylation Flux of Glutamine to Lipid in a Brown Adipocyte Cell Line* , 2008, Journal of Biological Chemistry.
[54] Scott B. Crown,et al. Parallel labeling experiments and metabolic flux analysis: Past, present and future methodologies. , 2013, Metabolic engineering.
[55] M. Antoniewicz,et al. Metabolic flux analysis of CHO cells at growth and non-growth phases using isotopic tracers and mass spectrometry. , 2011, Metabolic engineering.
[56] Brian Kelley,et al. Industrialization of mAb production technology: The bioprocessing industry at a crossroads , 2009, mAbs.
[57] F. Gòdia,et al. Identification of key patterns in the metabolism of hybridoma cells in culture , 1997 .
[58] H. Budman,et al. Metabolic flux-based modeling of mAb production during batch and fed-batch operations , 2009, Bioprocess and biosystems engineering.
[59] Nicola Zamboni,et al. 13C metabolic flux analysis in complex systems. , 2011, Current opinion in biotechnology.
[60] David Kleinfeld,et al. A Guide to Delineate the Logic of Neurovascular Signaling in the Brain , 2010, Front. Neuroenerg..
[61] Ana P. Teixeira,et al. ¹H-NMR protocol for exometabolome analysis of cultured mammalian cells. , 2014, Methods in molecular biology.
[62] Bernhard O Palsson,et al. Isotopomer analysis of myocardial substrate metabolism: A systems biology approach , 2006, Biotechnology and bioengineering.
[63] A. Teixeira,et al. Estimation of intracellular fluxes in cerebellar neurons after hypoglycemia: Importance of the pyruvate recycling pathway and glutamine oxidation , 2011, Journal of neuroscience research.
[64] Neelanjana Sengupta,et al. Metabolic flux analysis of CHO cell metabolism in the late non‐growth phase , 2011, Biotechnology and bioengineering.
[65] Michael C. Borys,et al. Optimizing amino acid composition of CHO cell culture media for a fusion protein production , 2011 .
[66] Konstantin Konstantinov,et al. Towards industrial application of quasi real-time metabolic flux analysis for mammalian cell culture. , 2006, Advances in biochemical engineering/biotechnology.
[67] E. Heinzle,et al. Effects of drugs in subtoxic concentrations on the metabolic fluxes in human hepatoma cell line Hep G2. , 2009, Toxicology and applied pharmacology.
[68] Klaus Maier,et al. Identification of metabolic fluxes in hepatic cells from transient 13C‐labeling experiments: Part II. Flux estimation , 2008, Biotechnology and bioengineering.
[69] Ana P. Teixeira,et al. A Comprehensive Metabolic Profile of Cultured Astrocytes Using Isotopic Transient Metabolic Flux Analysis and 13C-Labeled Glucose , 2011, Front. Neuroenerg..
[70] Wolfgang Wiechert,et al. Computational tools for isotopically instationary 13C labeling experiments under metabolic steady state conditions. , 2006, Metabolic engineering.
[71] Marta Cascante,et al. Mass isotopomer study of the nonoxidative pathways of the pentose cycle with [1,2-13C2]glucose. , 1998, American journal of physiology. Endocrinology and metabolism.
[72] F. Gòdia,et al. Considerations on the lactate consumption by CHO cells in the presence of galactose. , 2006, Journal of biotechnology.
[73] Jae-Jin Jeon,et al. Effect of culture temperature on erythropoietin production and glycosylation in a perfusion culture of recombinant CHO cells , 2008, Biotechnology and bioengineering.
[74] Maciek R Antoniewicz,et al. 13C metabolic flux analysis: optimal design of isotopic labeling experiments. , 2013, Current opinion in biotechnology.
[75] L. Quek,et al. OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis , 2009, Microbial cell factories.
[76] Michael C. Jewett,et al. Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p , 2009, Proceedings of the National Academy of Sciences.
[77] H. Blanch,et al. Examination of primary metabolic pathways in a murine hybridoma with carbon‐13 nuclear magnetic resonance spectroscopy , 1994, Biotechnology and bioengineering.
[78] Xiao-Jiang Feng,et al. Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy , 2008, Nature Biotechnology.
[79] Wolfgang Wiechert,et al. Experimental design principles for isotopically instationary 13C labeling experiments , 2006, Biotechnology and bioengineering.
[80] Gregory Stephanopoulos,et al. Molecular Systems Biology Peer Review Process File Oncogenic K-ras Decouples Glucose and Glutamine Metabolism to Support Cancer Cell Growth Transaction Report , 2022 .
[81] Adam L. Meadows,et al. Estradiol stimulates the biosynthetic pathways of breast cancer cells: detection by metabolic flux analysis. , 2006, Metabolic engineering.
[82] Maciek R Antoniewicz,et al. Parallel labeling experiments with [1,2-(13)C]glucose and [U-(13)C]glutamine provide new insights into CHO cell metabolism. , 2013, Metabolic engineering.
[83] G. Stephanopoulos,et al. Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions. , 2007, Metabolic engineering.
[84] George Stephanopoulos,et al. Modeling of Isotope Distributions and Intracellular Fluxes in Metabolic Networks Using Atom Mapping Matrices , 1994 .
[85] M S Lao,et al. Effects of Ammonium and Lactate on Growth and Metabolism of a Recombinant Chinese Hamster Ovary Cell Culture , 1997, Biotechnology progress.
[86] Wei-Shou Hu,et al. Analysis of cellular metabolism of hybridoma cells at distinct physiological states. , 2003, Journal of bioscience and bioengineering.
[87] Christoph Wittmann,et al. Fluxome analysis using GC-MS , 2007, Microbial cell factories.
[88] Uwe Sauer,et al. Comparison of quantitative metabolite imaging tools and carbon-13 techniques for fluxomics. , 2009, Methods in molecular biology.
[89] G Stephanopoulos,et al. Metabolism of peptide amino acids by Chinese hamster ovary cells grown in a complex medium. , 1999, Biotechnology and bioengineering.
[90] U. Sauer,et al. 13C-based metabolic flux analysis , 2009, Nature Protocols.
[91] Vicente Bernal,et al. Metabolic alterations induced by ischemia in primary cultures of astrocytes: merging 13C NMR spectroscopy and metabolic flux analysis , 2010, Journal of neurochemistry.
[92] Sakiko Okumoto,et al. Quantitative imaging for discovery and assembly of the metabo-regulome. , 2008, The New phytologist.
[93] T. Omasa,et al. Enhanced antibody production following intermediate addition based on flux analysis in mammalian cell continuous culture , 2010, Bioprocess and biosystems engineering.
[94] Olivier Henry,et al. Enhanced glycoprotein production in HEK-293 cells expressing pyruvate carboxylase. , 2011, Metabolic engineering.
[95] Johannes Tramper,et al. Metabolic-flux analysis of hybridoma cells under oxidative and reductive stress using mass balances , 2000, Cytotechnology.
[96] A. Illanes,et al. Analysis of CHO Cells Metabolic Redistribution in a Glutamate‐Based Defined Medium in Continuous Culture , 2001, Biotechnology progress.
[97] Gregory Stephanopoulos,et al. Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells. , 2009, Journal of biotechnology.
[98] B. Hammock,et al. Mass spectrometry-based metabolomics. , 2007, Mass spectrometry reviews.
[99] M. Perrier,et al. Metabolic flux analysis of HEK-293 cells in perfusion cultures for the production of adenoviral vectors. , 2005, Metabolic engineering.
[100] Gregory Stephanopoulos,et al. Accurate assessment of amino acid mass isotopomer distributions for metabolic flux analysis. , 2007, Analytical chemistry.
[101] A. D. de Graaf,et al. Metabolic flux analysis of CHO cells in perfusion culture by metabolite balancing and 2D [13C, 1H] COSY NMR spectroscopy. , 2010, Metabolic engineering.
[102] H. Bonarius,et al. Flux analysis of underdetermined metabolic networks: the quest for the missing constraints. , 1997 .
[103] M. Dauner,et al. Metabolic flux model for an anchorage‐dependent MDCK cell line: Characteristic growth phases and minimum substrate consumption flux distribution , 2008, Biotechnology and bioengineering.
[104] Rui Oliveira,et al. Combining metabolic flux analysis tools and 13C NMR to estimate intracellular fluxes of cultured astrocytes , 2008, Neurochemistry International.
[105] Christian M. Metallo,et al. Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia , 2011, Nature.
[106] Mohamed Al-Rubeai,et al. Metabolic characterization of a hyper-productive state in an antibody producing NS0 myeloma cell line. , 2009, Metabolic engineering.
[107] T. Szyperski. Biosynthetically directed fractional 13C-labeling of proteinogenic amino acids. An efficient analytical tool to investigate intermediary metabolism. , 1995, European journal of biochemistry.
[108] A. Wouwer,et al. A detailed metabolic flux analysis of an underdetermined network of CHO cells. , 2010, Journal of biotechnology.
[109] Elmar Heinzle,et al. Metabolic flux analysis in systems biology of mammalian cells. , 2012, Advances in biochemical engineering/biotechnology.
[110] Rui Oliveira,et al. Systems biotechnology of animal cells: the road to prediction. , 2012, Trends in biotechnology.
[111] B. Ingalls,et al. Development of a mathematical model for evaluating the dynamics of normal and apoptotic Chinese hamster ovary cells , 2011, Biotechnology progress.
[112] Rui Oliveira,et al. Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control , 2007, BMC Bioinformatics.