Investigation of the ultrastructure of yeast using cryo-immuno-electron microscopy

Yeast has been a crucial model system for the investigation of a multitude of cellular processes and many approaches have been used to study these, including genetics, biochemistry and fluorescence microscopy approaches. The morphological analyses of these organisms by electron microscopy (EM), however, have remained limited because of the lack of techniques leading to satisfactory ultrastructural resolution. In this compendium, we will review the various applications of an immuno-electron microscopy (IEM) protocol we have recently developed from the Tokuyasu method. This novel approach, which allows excellent cell preservation and unprecedented resolution of yeast morphology, has been successfully applied not only for the study of Saccharomyces cerevisiae and Pichia pastoris but also the filamentous fungus Aspergillus nidulans. This procedure is compatible with immuno-gold labelling and allows the combination of protein localization with a fine ultrastructural resolution of protein complexes, vesicular carriers and organelles. This new IEM protocol is thus a valuable tool for the large community of scientists studying the physiology of yeast but also exploiting these organisms as model systems for the investigation of molecular principles important cellular pathways conserved among eukaryotes.

[1]  A. van der Vaart,et al.  Exit from the Golgi Is Required for the Expansion of the Autophagosomal Phagophore in Yeast Saccharomyces cerevisiae , 2010, Molecular biology of the cell.

[2]  V. Doye,et al.  Pom33, a novel transmembrane nucleoporin required for proper nuclear pore complex distribution , 2010, The Journal of cell biology.

[3]  H. Arlt,et al.  The CORVET subunit Vps8 cooperates with the Rab5 homolog Vps21 to induce clustering of late endosomal compartments. , 2009, Molecular biology of the cell.

[4]  F. Reggiori,et al.  Ultrastructural Analysis of Nanogold-labeled Endocytic Compartments of Yeast Saccharomyces cerevisiae Using a Cryosectioning Procedure , 2009, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[5]  M. Mari,et al.  Vps41 phosphorylation and the Rab Ypt7 control the targeting of the HOPS complex to endosome-vacuole fusion sites. , 2009, Molecular biology of the cell.

[6]  S. Fisher,et al.  The human placenta is a hematopoietic organ during the embryonic and fetal periods of development. , 2009, Developmental biology.

[7]  M. Baba Electron microscopy in yeast. , 2008, Methods in enzymology.

[8]  M. Mari,et al.  A Cryosectioning Procedure for the Ultrastructural Analysis and the Immunogold Labelling of Yeast Saccharomyces cerevisiae , 2008, Traffic.

[9]  H. Geuze,et al.  SNX1 Defines an Early Endosomal Recycling Exit for Sortilin and Mannose 6‐Phosphate Receptors , 2008, Traffic.

[10]  J. Slot,et al.  Cryosectioning and immunolabeling , 2007, Nature Protocols.

[11]  E. V. van Donselaar,et al.  Immunogold Labeling of Cryosections from High‐Pressure Frozen Cells , 2007, Traffic.

[12]  M. Peñalva Tracing the endocytic pathway of Aspergillus nidulans with FM4-64. , 2005, Fungal genetics and biology : FG & B.

[13]  J. Cregg,et al.  Pexophagy: The Selective Autophagy of Peroxisomes , 2005, Autophagy.

[14]  A. J. Koster,et al.  Endosomal compartmentalization in three dimensions: Implications for membrane fusion , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[15]  Daniel J Klionsky,et al.  Vps51 Is Part of the Yeast Vps Fifty-three Tethering Complex Essential for Retrograde Traffic from the Early Endosome and Cvt Vesicle Completion* , 2003, The Journal of Biological Chemistry.

[16]  H. Riezman,et al.  Ordering of Compartments in the Yeast Endocytic Pathway , 2002, Traffic.

[17]  M. Osumi The ultrastructure of yeast: cell wall structure and formation. , 1998, Micron.

[18]  F. Képès,et al.  Modifications of the golgi apparatus in Saccharomyces cerevisiae lacking microtubules , 1996, The Anatomical record.

[19]  A. Hartig,et al.  Immunogold labeling of yeast cells: an efficient tool for the study of protein targeting and morphological alterations due to overexpression and inactivation of genes , 1996, Histochemistry and Cell Biology.

[20]  J. Slot,et al.  Improving structural integrity of cryosections for immunogold labeling , 1996, Histochemistry and Cell Biology.

[21]  K. Köhrer,et al.  Multilamellar endosome-like compartment accumulates in the yeast vps28 vacuolar protein sorting mutant. , 1996, Molecular biology of the cell.

[22]  C. L. Jackson,et al.  Ultrastructural modifications of vesicular and Golgi elements in the Saccharomyces cerevisiae sec21 mutant at permissive and non‐permissive temperatures , 1994, The Anatomical record.

[23]  J. Doonan Cell division in Aspergillus. , 1992, Journal of cell science.

[24]  E. W. Thompson,et al.  A rapid method for the preparation of yeast for immunoelectron microscopy using Lowicryl HM-20. , 1991, Journal of electron microscopy technique.

[25]  R. Schekman,et al.  Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway , 1990, Cell.

[26]  H. Riezman,et al.  Immunolocalization of glyceraldehyde-3-phosphate dehydrogenase, hexokinase, and carboxypeptidase Y in yeast cells at the ultrastructural level. , 1987, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[27]  K. Tokuyasu A TECHNIQUE FOR ULTRACRYOTOMY OF CELL SUSPENSIONS AND TISSUES , 1973, The Journal of cell biology.

[28]  A. B. Maunsbach The influence of different fixatives and fixation methods on the ultrastructure of rat kidney proximal tubule cells. II. Effects of varying osmolality, ionic strength, buffer system and fixative concentration of glutaraldehyde solutions. , 1966, Journal of ultrastructure research.

[29]  A. B. Maunsbach,et al.  The influence of different fixatives and fixation methods on the ultrastructure of rat kidney proximal tubule cells. I. Comparison of different perfusion fixation methods and of glutaraldehyde, formaldehyde and osmium tetroxide fixatives. , 1966, Journal of ultrastructure research.

[30]  Muriel Mari,et al.  Microscopy: Science, Technology, Applications and Education , 2010 .

[31]  S. Murray High pressure freezing and freeze substitution of Schizosaccharomyces pombe and Saccharomyces cerevisiae for TEM. , 2008, Methods in cell biology.

[32]  S. Subramani,et al.  Environmental response of yeast peroxisomes , 2007, Cell Biochemistry and Biophysics.

[33]  E. Perkins,et al.  Conventional and immunoelectron microscopy of mitochondria. , 2007, Methods in molecular biology.

[34]  Amanda K. Pearce,et al.  Cell cycle molecules and mechanisms of the budding and fission yeasts. , 2005, Methods in molecular biology.

[35]  D. Botstein,et al.  Immunoelectron microscopy of aldehyde-fixed yeast cells. , 2002, Methods in enzymology.

[36]  David N Mastronarde,et al.  Electron tomography of yeast cells. , 2002, Methods in enzymology.

[37]  T. Müller-Reichert,et al.  Cryomethods for thin section electron microscopy. , 2002, Methods in enzymology.

[38]  D. Mastronarde,et al.  Using rapid freeze and freeze-substitution for the preparation of yeast cells for electron microscopy and three-dimensional analysis. , 2001, Methods in cell biology.

[39]  S. Martinelli Aspergillus nidulans as an experimental organism. , 1994, Progress in industrial microbiology.

[40]  Martin Sd Aspergillus nidulans as an experimental organism. , 1994 .

[41]  B. Byers Cytology of the Yeast Life Cycle , 1981 .