Calour: an Interactive, Microbe-Centric Analysis Tool
暂无分享,去创建一个
Amnon Amir | Rob Knight | Daniel McDonald | Lingjing Jiang | Anupriya Tripathi | Zhenjiang Zech Xu | James T. Morton | Shi Huang | Jon Sanders | Qiyun Zhu | Molly C. Bletz | R. Knight | J. Sanders | Amnon Amir | A. Tripathi | Lingjing Jiang | Qiyun Zhu | Z. Xu | Shi Huang | M. Bletz | Daniel McDonald | R. Knight
[1] Sebastian Steinfartz,et al. Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions , 2016, Nature Communications.
[2] Rob Knight,et al. Dramatic Differences in Gut Bacterial Densities Correlate with Diet and Habitat in Rainforest Ants. , 2017, Integrative and comparative biology.
[3] Martin J. Blaser,et al. Body Site Is a More Determinant Factor than Human Population Diversity in the Healthy Skin Microbiome , 2016, PloS one.
[4] J. Estellé,et al. Chronic Trichuris muris Infection Decreases Diversity of the Intestinal Microbiota and Concomitantly Increases the Abundance of Lactobacilli , 2015, PloS one.
[5] Nigel W. Hardy,et al. Proposed minimum reporting standards for chemical analysis , 2007, Metabolomics.
[6] T. Sicheritz-Pontén,et al. Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing , 2017, GigaScience.
[7] Andreas Wilke,et al. The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome , 2012, GigaScience.
[8] Gary D Bader,et al. Biological Network Exploration with Cytoscape 3 , 2014, Current protocols in bioinformatics.
[9] Kristian Fog Nielsen,et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking , 2016, Nature Biotechnology.
[10] Lutz Krause,et al. Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions , 2016, Bioinform..
[11] Fang Liu,et al. The sponge microbiome project , 2017, GigaScience.
[12] Daniel H. Huson,et al. MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data , 2016, PLoS Comput. Biol..
[13] Rob Knight,et al. American Gut: an Open Platform for Citizen Science Microbiome Research , 2018, mSystems.
[14] Scott Powell,et al. Stability and phylogenetic correlation in gut microbiota: lessons from ants and apes , 2014, Molecular ecology.
[15] Paul J. McMurdie,et al. DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.
[16] Sophie J. Weiss,et al. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision , 2016, The ISME Journal.
[17] Michael R La Frano,et al. Diet-induced obesity and weight loss alter bile acid concentrations and bile acid-sensitive gene expression in insulin target tissues of C57BL/6J mice. , 2017, Nutrition research.
[18] Blair J. Rossetti,et al. Biogeography of a human oral microbiome at the micron scale , 2016, Proceedings of the National Academy of Sciences.
[19] Amnon Amir,et al. Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes , 2017, mSystems.
[20] Rob Knight,et al. EMPeror: a tool for visualizing high-throughput microbial community data , 2013, GigaScience.
[21] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[22] Rob Knight,et al. Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome , 2018, mSystems.
[23] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[24] Rob Knight,et al. Uncovering the Horseshoe Effect in Microbial Analyses , 2017, mSystems.
[25] Soichi Tanabe,et al. High-fat Diet-induced Intestinal Hyperpermeability is Associated with Increased Bile Acids in the Large Intestine of Mice. , 2016, Journal of food science.
[26] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[27] János Podani,et al. RESEMBLANCE COEFFICIENTS AND THE HORSESHOE EFFECT IN PRINCIPAL COORDINATES ANALYSIS , 2002 .
[28] Fengzhu Sun,et al. Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates , 2011, BMC Systems Biology.
[29] N. Fierer,et al. Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information , 2017, mSphere.
[30] Peter B. Gilbert,et al. A modified false discovery rate multiple‐comparisons procedure for discrete data, applied to human immunodeficiency virus genetics , 2005 .
[31] Jose A Navas-Molina,et al. Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns , 2017, mSystems.
[32] Susan M. Huse,et al. Oligotyping analysis of the human oral microbiome , 2014, Proceedings of the National Academy of Sciences.
[33] Robert G. Beiko,et al. STAMP: statistical analysis of taxonomic and functional profiles , 2014, Bioinform..