The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
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Núria Queralt-Rosinach | Laura Inés Furlong | Michel Dumontier | Geraint Duck | Robert Hoehndorf | James P. McCusker | Alison Callahan | Jose Cruz-Toledo | Matthias Samwald | Leonid L. Chepelev | Mark D. Wilkinson | Christopher J. O. Baker | Dana Klassen | Natalia Villanueva-Rosales | Joachim Baran | Nicholas R. Del Rio | Nichealla Keath | L. Furlong | A. Callahan | M. Samwald | M. Dumontier | R. Hoehndorf | N. Queralt-Rosinach | N. D. Rio | L. Chepelev | C. Baker | Dana Klassen | J. Baran | Jose Cruz-Toledo | Geraint Duck | Jamie McCusker | N. Villanueva-Rosales | Nichealla Keath
[1] Elena Beisswanger,et al. Towards a Top-Domain Ontology for Linking Biomedical Ontologies , 2007, MedInfo.
[2] Martin Boeker,et al. Scalable representations of diseases in biomedical ontologies , 2011, J. Biomed. Semant..
[3] Mark D. Wilkinson,et al. SADI, SHARE, and the in silico scientific method , 2010, BMC Bioinformatics.
[4] R. Altman,et al. Pharmacogenomics Knowledge for Personalized Medicine , 2012, Clinical pharmacology and therapeutics.
[5] Mark D. Wilkinson,et al. The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation , 2011, J. Biomed. Semant..
[6] Michel Dumontier,et al. Integrating systems biology models and biomedical ontologies , 2011, BMC Systems Biology.
[7] Heiner Stuckenschmidt,et al. Ontology-Based Integration of Information - A Survey of Existing Approaches , 2001, OIS@IJCAI.
[8] Martijn J. Schuemie,et al. Novel Protein-Protein Interactions Inferred from Literature Context , 2009, PloS one.
[9] Robert Stevens,et al. Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology , 2008, BMC Bioinformatics.
[10] Robert Stevens,et al. Applying Ontology Design Patterns in Bio-ontologies , 2008, EKAW.
[11] M. Ashburner,et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration , 2007, Nature Biotechnology.
[12] Michel Dumontier,et al. Ontology-Based Querying with Bio2RDF’s Linked Open Data , 2013, Journal of Biomedical Semantics.
[13] Stephen P Gardner,et al. Ontologies and semantic data integration. , 2005, Drug discovery today.
[14] Peter F. Patel-Schneider,et al. OWL 2 Web Ontology Language Primer (Second Edition) , 2012 .
[15] Werner Ceusters,et al. Ontological realism: A methodology for coordinated evolution of scientific ontologies , 2010, Appl. Ontology.
[16] Olivier Bodenreider,et al. Bio-ontologies: current trends and future directions , 2006, Briefings Bioinform..
[17] Michael Krauthammer,et al. Broadening the Scope of Nanopublications , 2013, ESWC.
[18] Michel Dumontier,et al. The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions , 2013, JMIR research protocols.
[19] Wendy Hall,et al. The Semantic Web Revisited , 2006, IEEE Intelligent Systems.
[20] David S. Wishart,et al. DrugBank 3.0: a comprehensive resource for ‘Omics’ research on drugs , 2010, Nucleic Acids Res..
[21] A. Rector,et al. Relations in biomedical ontologies , 2005, Genome Biology.
[22] Nicolas Le Novère,et al. BioModels Database: a repository of mathematical models of biological processes. , 2013, Methods in molecular biology.
[23] Carola Eschenbach,et al. Formal Ontology in Information Systems , 2008 .
[24] Robert Stevens,et al. Adding a Little Reality to Building Ontologies for Biology , 2010, PloS one.
[25] Jeff Z. Pan,et al. Resource Description Framework , 2020, Definitions.
[26] Carole A. Goble,et al. State of the nation in data integration for bioinformatics , 2008, J. Biomed. Informatics.
[27] Amit P. Sheth,et al. An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence , 2008, J. Biomed. Informatics.
[28] Theo Tryfonas,et al. Frontiers in Artificial Intelligence and Applications , 2009 .
[29] Natalya F. Noy,et al. Semantic integration: a survey of ontology-based approaches , 2004, SGMD.
[30] Michel Dumontier,et al. Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics , 2011, BMC Bioinformatics.
[31] Nicole Tourigny,et al. Bio2RDF: Towards a mashup to build bioinformatics knowledge systems , 2008, J. Biomed. Informatics.
[32] Deana D. Pennington,et al. ELSEWeb Meets SADI: Supporting Data-to-Model Integration for Biodiversity Forecasting , 2013, AAAI Fall Symposia.
[33] Michel Dumontier,et al. Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics , 2012, Bioinform..
[34] Paul N. Schofield,et al. PhenomeNET: a whole-phenome approach to disease gene discovery , 2011, Nucleic acids research.
[35] Olivier Bodenreider,et al. Alignment of the UMLS semantic network with BioTop: methodology and assessment , 2009, Bioinform..
[36] Shawn Bowers,et al. An ontology for describing and synthesizing ecological observation data , 2007, Ecol. Informatics.
[37] Dan Brickley,et al. Rdf vocabulary description language 1.0 : Rdf schema , 2004 .
[38] Aldo Gangemi,et al. Ontology Design Patterns for Semantic Web Content , 2005, SEMWEB.
[39] Rob W.W. Hooft,et al. The value of data , 2011, Nature Genetics.
[40] D. Cooper,et al. Microattribution and nanopublication as means to incentivize the placement of human genome variation data into the public domain , 2012, Human mutation.
[41] Jessica A. Turner,et al. Modeling biomedical experimental processes with OBI , 2010, J. Biomed. Semant..
[42] Vipul Kashyap,et al. The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside , 2011, J. Biomed. Semant..
[43] Martin Boeker,et al. Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology , 2012, Journal of Biomedical Semantics.