Spatio-spectral classification of hyperspectral images for brain cancer detection during surgical operations

Surgery for brain cancer is a major problem in neurosurgery. The diffuse infiltration into the surrounding normal brain by these tumors makes their accurate identification by the naked eye difficult. Since surgery is the common treatment for brain cancer, an accurate radical resection of the tumor leads to improved survival rates for patients. However, the identification of the tumor boundaries during surgery is challenging. Hyperspectral imaging is a non-contact, non-ionizing and non-invasive technique suitable for medical diagnosis. This study presents the development of a novel classification method taking into account the spatial and spectral characteristics of the hyperspectral images to help neurosurgeons to accurately determine the tumor boundaries in surgical-time during the resection, avoiding excessive excision of normal tissue or unintentionally leaving residual tumor. The algorithm proposed in this study to approach an efficient solution consists of a hybrid framework that combines both supervised and unsupervised machine learning methods. Firstly, a supervised pixel-wise classification using a Support Vector Machine classifier is performed. The generated classification map is spatially homogenized using a one-band representation of the HS cube, employing the Fixed Reference t-Stochastic Neighbors Embedding dimensional reduction algorithm, and performing a K-Nearest Neighbors filtering. The information generated by the supervised stage is combined with a segmentation map obtained via unsupervised clustering employing a Hierarchical K-Means algorithm. The fusion is performed using a majority voting approach that associates each cluster with a certain class. To evaluate the proposed approach, five hyperspectral images of surface of the brain affected by glioblastoma tumor in vivo from five different patients have been used. The final classification maps obtained have been analyzed and validated by specialists. These preliminary results are promising, obtaining an accurate delineation of the tumor area.

[1]  Hongjun Wang,et al.  Tongue Tumor Detection in Medical Hyperspectral Images , 2011, Sensors.

[2]  Yoshua Bengio,et al.  Exploring Strategies for Training Deep Neural Networks , 2009, J. Mach. Learn. Res..

[3]  Guolan Lu,et al.  Medical hyperspectral imaging: a review , 2014, Journal of biomedical optics.

[4]  Oleg O. Myakinin,et al.  Hyperspectral imaging of skin and lung cancers , 2016, SPIE Photonics Europe.

[5]  F. Zanella,et al.  Fluorescence-guided surgery with 5-aminolevulinic acid for resection of malignant glioma: a randomised controlled multicentre phase III trial. , 2006, The Lancet. Oncology.

[6]  Andrew W. Young,et al.  Exploring the perception of social characteristics in faces using the isolation effect , 2005 .

[7]  Chih-Jen Lin,et al.  LIBSVM: A library for support vector machines , 2011, TIST.

[8]  S T Roweis,et al.  Nonlinear dimensionality reduction by locally linear embedding. , 2000, Science.

[9]  Gustavo Marrero Callicó,et al.  Demo: HELICoiD tool demonstrator for real-time brain cancer detection , 2016, 2016 Conference on Design and Architectures for Signal and Image Processing (DASIP).

[10]  Sebastián López,et al.  A Novel Use of Hyperspectral Images for Human Brain Cancer Detection using in-Vivo Samples , 2016, BIOSIGNALS.

[11]  Jon Atli Benediktsson,et al.  Spectral–Spatial Classification of Hyperspectral Imagery Based on Partitional Clustering Techniques , 2009, IEEE Transactions on Geoscience and Remote Sensing.

[12]  Shutao Li,et al.  Spectral–Spatial Hyperspectral Image Classification Based on KNN , 2016 .

[13]  Guolan Lu,et al.  Hyperspectral imaging of neoplastic progression in a mouse model of oral carcinogenesis , 2016, SPIE Medical Imaging.

[14]  Roberto Sarmiento,et al.  HELICoiD project: a new use of hyperspectral imaging for brain cancer detection in real-time during neurosurgical operations , 2016, SPIE Commercial + Scientific Sensing and Imaging.

[15]  Luma V. Halig,et al.  Hyperspectral imaging and quantitative analysis for prostate cancer detection. , 2012, Journal of biomedical optics.

[16]  Y. Kosugi,et al.  Cancer detection using infrared hyperspectral imaging , 2011, Cancer science.

[17]  P. Colarusso,et al.  Infrared Spectroscopic Imaging: From Planetary to Cellular Systems , 1998 .

[18]  Mikhail Belkin,et al.  Laplacian Eigenmaps and Spectral Techniques for Embedding and Clustering , 2001, NIPS.

[19]  Dongsheng Wang,et al.  A Minimum Spanning Forest-Based Method for Noninvasive Cancer Detection With Hyperspectral Imaging , 2016, IEEE Transactions on Biomedical Engineering.

[20]  Juan Carlos Fernández,et al.  Multiobjective evolutionary algorithms to identify highly autocorrelated areas: the case of spatial distribution in financially compromised farms , 2014, Ann. Oper. Res..

[21]  D. Donoho,et al.  Hessian eigenmaps: Locally linear embedding techniques for high-dimensional data , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Hartmut Dickhaus,et al.  Quantifizierung von Brain-Shift-Effekten in MR-Aufnahmen , 1997 .

[23]  Xiguang Wang,et al.  In vivo use of hyperspectral imaging to develop a noncontact endoscopic diagnosis support system for malignant colorectal tumors , 2016, Journal of biomedical optics.

[24]  T. Krings,et al.  Course of brain shift during microsurgical resection of supratentorial cerebral lesions: limits of conventional neuronavigation , 2004, Acta Neurochirurgica.

[25]  Jörg Bendix,et al.  Development of an image pre‐processor for operational hyperspectral laryngeal cancer detection , 2016, Journal of biophotonics.

[26]  Kashif Rajpoot,et al.  SVM Optimization for Hyperspectral Colon Tissue Cell Classification , 2004, MICCAI.

[27]  Jesús Angulo,et al.  Unsupervised Clustering of Hyperspectral Images of Brain Tissues by Hierarchical Non-negative Matrix Factorization , 2016, BIOIMAGING.

[28]  D. Faller,et al.  Medical hyperspectral imaging to facilitate residual tumor identification during surgery , 2007, Cancer biology & therapy.

[29]  Eric O. Postma,et al.  Dimensionality Reduction: A Comparative Review , 2008 .

[30]  J. Tenenbaum,et al.  A global geometric framework for nonlinear dimensionality reduction. , 2000, Science.

[31]  Kevin Petrecca,et al.  Failure pattern following complete resection plus radiotherapy and temozolomide is at the resection margin in patients with glioblastoma , 2012, Journal of Neuro-Oncology.

[32]  Guang-Zhong Yang,et al.  Manifold Embedding and Semantic Segmentation for Intraoperative Guidance With Hyperspectral Brain Imaging , 2017, IEEE Transactions on Medical Imaging.

[33]  Benoît Dupont de Dinechin,et al.  A clustered manycore processor architecture for embedded and accelerated applications , 2013, 2013 IEEE High Performance Extreme Computing Conference (HPEC).

[34]  Ming Yang,et al.  Wavelet Entropy and Directed Acyclic Graph Support Vector Machine for Detection of Patients with Unilateral Hearing Loss in MRI Scanning , 2016, Front. Comput. Neurosci..

[35]  Jörg Bendix,et al.  Hyperspectral Imaging Using Flexible Endoscopy for Laryngeal Cancer Detection , 2016, Sensors.

[36]  Guolan Lu,et al.  Framework for hyperspectral image processing and quantification for cancer detection during animal tumor surgery , 2015, Journal of biomedical optics.

[37]  Gregory W. Auner,et al.  Raman molecular imaging of brain frozen tissue sections , 2014, Journal of Neuro-Oncology.

[38]  Guang-Zhong Yang,et al.  Tissue Characterization Using Dimensionality Reduction and Fluorescence Imaging , 2006, MICCAI.

[39]  Zhuo Georgia Chen,et al.  Detection of cancer metastasis using a novel macroscopic hyperspectral method , 2012, Medical Imaging.

[40]  Anthony G. Hudetz,et al.  Functional and Topological Conditions for Explosive Synchronization Develop in Human Brain Networks with the Onset of Anesthetic-Induced Unconsciousness , 2016, Front. Comput. Neurosci..

[41]  H Dickhaus,et al.  [Quantification of brain shift effects in MRI images]. , 1997, Biomedizinische Technik. Biomedical engineering.

[42]  S. Kong,et al.  Hyperspectral Image Analysis for Skin Tumor Detection , 2009 .

[43]  Ming Yang,et al.  Comparison of machine learning methods for stationary wavelet entropy-based multiple sclerosis detection: decision tree, k-nearest neighbors, and support vector machine , 2016, Simul..

[44]  Jörg-Christian Tonn,et al.  Counterbalancing risks and gains from extended resections in malignant glioma surgery: a supplemental analysis from the randomized 5-aminolevulinic acid glioma resection study. Clinical article. , 2011, Journal of neurosurgery.

[45]  David Zhang,et al.  Classification of hyperspectral medical tongue images for tongue diagnosis , 2007, Comput. Medical Imaging Graph..

[46]  M. Berger,et al.  GLIOMA EXTENT OF RESECTION AND ITS IMPACT ON PATIENT OUTCOME , 2008, Neurosurgery.

[47]  Guolan Lu,et al.  Spectral-spatial classification using tensor modeling for cancer detection with hyperspectral imaging , 2014, Medical Imaging.

[48]  Mitchel S. Berger,et al.  Operative techniques for gliomas and the value of extent of resection , 2009, Neurotherapeutics.

[49]  Geoffrey E. Hinton,et al.  Visualizing Data using t-SNE , 2008 .

[50]  Karl Pearson F.R.S. LIII. On lines and planes of closest fit to systems of points in space , 1901 .

[51]  Dongsheng Wang,et al.  Quantitative wavelength analysis and image classification for intraoperative cancer diagnosis with hyperspectral imaging , 2015, Medical Imaging.

[52]  Michael Sabel,et al.  Comparison of 18F-FET PET and 5-ALA fluorescence in cerebral gliomas , 2011, European Journal of Nuclear Medicine and Molecular Imaging.

[53]  Huimin Lu,et al.  Facial Emotion Recognition Based on Biorthogonal Wavelet Entropy, Fuzzy Support Vector Machine, and Stratified Cross Validation , 2016, IEEE Access.

[54]  Inderjit S. Dhillon,et al.  Generative model-based clustering of directional data , 2003, KDD '03.

[55]  Tuan Vo-Dinh,et al.  Hyperspectral fluorescence image analysis for use in medical diagnostics , 2005, SPIE BiOS.

[56]  Lorenzo Bruzzone,et al.  Kernel-based methods for hyperspectral image classification , 2005, IEEE Transactions on Geoscience and Remote Sensing.

[57]  N. Rajpoot,et al.  Hyperspectral Colon Tissue Classification using Morphological Analysis , 2006, 2006 International Conference on Emerging Technologies.