Transcriptome profiling and network analysis of genetically hypertensive mice identifies potential pharmacological targets of hypertension.

Hypertension is a condition with major cardiovascular and renal complications, affecting nearly a billion patients worldwide. Few validated gene targets are available for pharmacological intervention, so there is a need to identify new biological pathways regulating blood pressure and containing novel targets for treatment. The genetically hypertensive "blood pressure high" (BPH), normotensive "blood pressure normal" (BPN), and hypotensive "blood pressure low" (BPL) inbred mouse strains are an ideal system to study differences in gene expression patterns that may represent such biological pathways. We profiled gene expression in liver, heart, kidney, and aorta from BPH, BPN, and BPL mice and determined which biological processes are enriched in observed organ-specific signatures. As a result, we identified multiple biological pathways linked to blood pressure phenotype that could serve as a source of candidate genes causal for hypertension. To distinguish in the kidney signature genes whose differential expression pattern may cause changes in blood pressure from those genes whose differential expression pattern results from changes in blood pressure, we integrated phenotype-associated genes into Genetic Bayesian networks. The integration of data from gene expression profiling and genetics networks is a valuable approach to identify novel potential targets for the pharmacological treatment of hypertension.

[1]  J. Schwartz,et al.  Protection of atrial natriuretic factor against degradation: diuretic and natriuretic responses after in vivo inhibition of enkephalinase (EC 3.4.24.11) by acetorphan. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[2]  R. Seth,et al.  Role of meprin A in renal tubular epithelial cell injury. , 2007, Kidney international.

[3]  M. Iida,et al.  Increased Expression of gp91phox Homologues of NAD(P)H Oxidase in the Aortic Media during Chronic Hypertension: Involvement of the Renin-Angiotensin System , 2006, Hypertension Research.

[4]  J. Lamb,et al.  Elucidating the murine brain transcriptional network in a segregating mouse population to identify core functional modules for obesity and diabetes , 2006, Journal of neurochemistry.

[5]  D. Gerhold,et al.  Androgens drive divergent responses to salt stress in male versus female rat kidneys. , 2007, Genomics.

[6]  K. Fujiwara,et al.  Serum response factor: master regulator of the actin cytoskeleton and contractile apparatus. , 2007, American journal of physiology. Cell physiology.

[7]  R. Myers,et al.  Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data , 2005, Nucleic acids research.

[8]  R. Abbate,et al.  Association between a stromal cell-derived factor 1 (SDF-1/CXCL12) gene polymorphism and microvascular disease in systemic sclerosis , 2008, Annals of the rheumatic diseases.

[9]  D. O'Connor,et al.  Genome scan for blood pressure loci in mice. , 1999, Hypertension.

[10]  Hong Yang,et al.  Elevation of oxidative stress in the aorta of genetically hypertensive mice , 2003, Mechanisms of Ageing and Development.

[11]  J. Krieger,et al.  Three endothelial nitric oxide (NOS3) gene polymorphisms in hypertensive and normotensive individuals: meta-analysis of 53 studies reveals evidence of publication bias , 2007, Journal of hypertension.

[12]  A. Minenna,et al.  Association of the Q121 variant of ENPP1 gene with decreased kidney function among patients with type 2 diabetes. , 2009, American journal of kidney diseases : the official journal of the National Kidney Foundation.

[13]  Manikandan Jayapal,et al.  DNA MICROARRAY TECHNOLOGY FOR TARGET IDENTIFICATION AND VALIDATION , 2006, Clinical and experimental pharmacology & physiology.

[14]  E. Kamynina,et al.  Concerted action of ENaC, Nedd4-2, and Sgk1 in transepithelial Na(+) transport. , 2002, American journal of physiology. Renal physiology.

[15]  J. Staessen,et al.  Essential hypertension , 2003, The Lancet.

[16]  S. Horvath,et al.  Variations in DNA elucidate molecular networks that cause disease , 2008, Nature.

[17]  B. Walker,et al.  Pathophysiology of modulation of local glucocorticoid levels by 11β-hydroxysteroid dehydrogenases , 2001, Trends in Endocrinology & Metabolism.

[18]  R. Fogari,et al.  Antihypertensive Drugs and Fibrinolytic Function: Impact of Dual Calcium Channel and Renin-Angiotensin System Blockade , 2006 .

[19]  Simon C. Potter,et al.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls , 2007, Nature.

[20]  C. Szpirer,et al.  Chromosomal assignment of 11 loci in the rat by mouse-rat somatic hybrids and linkage , 1994, Mammalian Genome.

[21]  K. Mossman The Wellcome Trust Case Control Consortium, U.K. , 2008 .

[22]  Phuson Hulamm,et al.  Transcriptional adaptation to Clcn5 knockout in proximal tubules of mouse kidney. , 2008, Physiological genomics.

[23]  U. Syrbe,et al.  Effects of the Angiotensin II Type 1 Receptor Antagonist Telmisartan on Monocyte Adhesion and Activation in Patients with Essential Hypertension , 2007, Hypertension Research.

[24]  Y. Kokubo,et al.  Association of Genetic Polymorphisms of Endothelin-Converting Enzyme-1 Gene with Hypertension in a Japanese Population and Rare Missense Mutation in Preproendothelin-1 in Japanese Hypertensives , 2007, Hypertension Research.

[25]  Natasa Przulj,et al.  High-Throughput Mapping of a Dynamic Signaling Network in Mammalian Cells , 2005, Science.

[26]  S. Mathur,et al.  PPAR&ggr; Agonist Rosiglitazone Improves Vascular Function and Lowers Blood Pressure in Hypertensive Transgenic Mice , 2004, Hypertension.

[27]  G. Schlager,et al.  Characterization of hypertensive and hypotensive inbred strains of mice. , 1997, Laboratory animal science.

[28]  C. Kahn,et al.  Cross-talk between the insulin and angiotensin signaling systems. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[29]  Eric E. Schadt,et al.  Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice , 2006, Mammalian Genome.

[30]  Y. O. Xu-Cai,et al.  Corin: new insights into the natriuretic peptide system. , 2009, Kidney international.

[31]  Aldons J. Lusis,et al.  A thematic review series: systems biology approaches to metabolic and cardiovascular disorders , 2006, Journal of Lipid Research.

[32]  D. Greco,et al.  Pre-filtering improves reliability of Affymetrix GeneChips results when used to analyze gene expression in complex tissues. , 2008, Molecular and cellular probes.

[33]  T. Speed,et al.  Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.

[34]  G. Berglund,et al.  Blood Pressure Increase and Incidence of Hypertension in Relation to Inflammation-Sensitive Plasma Proteins , 2002, Arteriosclerosis, thrombosis, and vascular biology.

[35]  Alexander E. Kel,et al.  TRANSFAC®: transcriptional regulation, from patterns to profiles , 2003, Nucleic Acids Res..

[36]  A. Kurtz,et al.  Peroxisome Proliferator-Activated Receptor-&ggr; Is Involved in the Control of Renin Gene Expression , 2007, Hypertension.

[37]  Nicholas J Schork,et al.  Common genetic mechanisms of blood pressure elevation in two independent rodent models of human essential hypertension. , 2005, American journal of hypertension.

[38]  E. Vellaichamy,et al.  Guanylyl cyclase/natriuretic peptide receptor-A gene disruption causes increased adrenal angiotensin II and aldosterone levels. , 2007, American journal of physiology. Renal physiology.

[39]  H. Stefánsson,et al.  Genetics of gene expression and its effect on disease , 2008, Nature.

[40]  Michael Q. Zhang,et al.  DNA motifs in human and mouse proximal promoters predict tissue-specific expression. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[41]  M. Gaasenbeek,et al.  Candidate Genes That Determine Response to Salt in the Stroke-Prone Spontaneously Hypertensive Rat: Congenic Analysis , 2007, Hypertension.

[42]  M. Fromm,et al.  MDR1 genotype-dependent regulation of the aldosterone system in humans , 2007, Pharmacogenetics & Genomics.

[43]  N. Minamino,et al.  Adrenomedullin: a new hypotensive peptide. , 1996, Journal of hypertension. Supplement : official journal of the International Society of Hypertension.

[44]  C. Gardner,et al.  Evidence for Association of Polymorphisms in CYP2J2 and Susceptibility to Essential Hypertension , 2007, Annals of human genetics.

[45]  V. Romano Spica,et al.  CCR polymorphisms and hypertension. , 2006, American journal of hypertension.

[46]  T. Ogihara,et al.  Kynureninase is a novel candidate gene for hypertension in spontaneously hypertensive rats. , 2002, Hypertension research : official journal of the Japanese Society of Hypertension.

[47]  Qixuan Chen,et al.  Influence of dietary phytosterols and phytostanols on diastolic blood pressure and the expression of blood pressure regulatory genes in SHRSP and WKY inbred rats , 2008, British Journal of Nutrition.

[48]  GunnarEngström,et al.  Blood Pressure Increase and Incidence of Hypertension in Relation to Inflammation-Sensitive Plasma Proteins , 2002 .

[49]  G. Head,et al.  Role of the Sympathetic Nervous System in Schlager Genetically Hypertensive Mice , 2009, Hypertension.

[50]  Susan R. Wilson,et al.  Vascular microarray profiling in two models of hypertension identifies caveolin-1, Rgs2 and Rgs5 as antihypertensive targets , 2007, BMC Genomics.

[51]  Wyeth W. Wasserman,et al.  A new generation of JASPAR, the open-access repository for transcription factor binding site profiles , 2005, Nucleic Acids Res..

[52]  Douglas W. Smith,et al.  Rho Kinase Polymorphism Influences Blood Pressure and Systemic Vascular Resistance in Human Twins: Role of Heredity , 2006, Hypertension.

[53]  M. Furutani,et al.  Implications of mutations of activin receptor-like kinase 1 gene (ALK1) in addition to bone morphogenetic protein receptor II gene (BMPR2) in children with pulmonary arterial hypertension. , 2008, Circulation journal : official journal of the Japanese Circulation Society.

[54]  E. Schadt,et al.  Thematic review series: Systems Biology Approaches to Metabolic and Cardiovascular Disorders. Reverse engineering gene networks to identify key drivers of complex disease phenotypes Published, JLR Papers in Press, October 1, 2006. , 2006, Journal of Lipid Research.

[55]  R. Fogari,et al.  Antihypertensive drugs and fibrinolytic function. , 2006, American journal of hypertension.

[56]  Nicholas J Schork,et al.  Neuroendocrine Transcriptome in Genetic Hypertension: Multiple Changes in Diverse Adrenal Physiological Systems , 2004, Hypertension.

[57]  K. Reynolds,et al.  Global burden of hypertension: analysis of worldwide data , 2005, The Lancet.

[58]  Xia Yang,et al.  Validation of Candidate Causal Genes for Abdominal Obesity Which Affect Shared Metabolic Pathways and Networks , 2009, Nature Genetics.

[59]  Xia Yang,et al.  Liver and Adipose Expression Associated SNPs Are Enriched for Association to Type 2 Diabetes , 2010, PLoS genetics.

[60]  G. Schlager Selection for blood pressure levels in mice. , 1974, Genetics.