N‐terminal or signal peptide sequence engineering prevents truncation of human monoclonal antibody light chains

Monoclonal antibodies (mAbs) contain short N‐terminal signal peptides on each individual polypeptide that comprises the mature antibody, targeting them for export from the cell in which they are produced. The signal peptide is cleaved from each heavy chain (Hc) and light chain (Lc) polypeptide after translocation to the ER and prior to secretion. This process is generally highly efficient, producing a high proportion of correctly cleaved Hc and Lc polypeptides. However, mis‐cleavage of the signal peptide can occur, resulting in truncation or elongation at the N‐terminus of the Hc or Lc. This is undesirable for antibody manufacturing as it can impact efficacy and can result in product heterogeneity. Here, we describe a truncated variant of the Lc that was detected during a routine developability assessment of the recombinant human IgG1 MEDI8490 in Chinese hamster ovary cells. We found that the truncation of the Lc was caused due to the use of the murine Hc signal peptide together with a lambda Lc containing an SYE amino acid motif at the N‐terminus. This truncation was not caused by mis‐processing of the mRNA encoding the Lc and was not dependent on expression platform (transient or stable), the scale of the fed‐batch culture or clonal lineage. We further show that using alternative signal peptides or engineering the Lc SYE N‐terminal motif prevented the truncation and that this strategy will improve Lc homogeneity of other SYE lambda Lc‐containing mAbs. Biotechnol. Bioeng. 2017;114: 1970–1977. © 2017 Wiley Periodicals, Inc.

[1]  A. Balland,et al.  Rapid identification of an antibody DNA construct rearrangement sequence variant by mass spectrometry , 2014, mAbs.

[2]  Stian Knappskog,et al.  The level of synthesis and secretion of Gaussia princeps luciferase in transfected CHO cells is heavily dependent on the choice of signal peptide. , 2007, Journal of biotechnology.

[3]  J. Gordon,et al.  Deletion of the propeptide from human preproapolipoprotein A-II redirects cotranslational processing by signal peptidase. , 1986, The Journal of biological chemistry.

[4]  G von Heijne,et al.  Signal sequences. The limits of variation. , 1985, Journal of molecular biology.

[5]  B. Li,et al.  Optimization of Heavy Chain and Light Chain Signal Peptides for High Level Expression of Therapeutic Antibodies in CHO Cells , 2015, PloS one.

[6]  S. Cianférani,et al.  Characterization of the N-terminal heterogeneities of monoclonal antibodies using in-gel charge derivatization of α-amines and LC-MS/MS. , 2015, Analytical chemistry.

[7]  B. Wilkinson,et al.  Co-translational targeting and translocation of proteins to the endoplasmic reticulum. , 2013, Biochimica et biophysica acta.

[8]  S. Salzberg,et al.  GeneSplicer: a new computational method for splice site prediction. , 2001, Nucleic acids research.

[9]  G. Winter,et al.  Cloning immunoglobulin variable domains for expression by the polymerase chain reaction. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[10]  A. Cattaneo,et al.  An integrated vector system for the eukaryotic expression of antibodies or their fragments after selection from phage display libraries. , 1997, Gene.

[11]  Identification of an alternative signal peptide cleavage site of mouse monoclonal antibodies by mass spectrometry. , 2007, Immunology letters.

[12]  Z. Konthur,et al.  Secretory signal peptide modification for optimized antibody-fragment expression-secretion in Leishmania tarentolae , 2012, Microbial Cell Factories.

[13]  A. Ambrogelly,et al.  Characterization of antibody variants during process development: The tale of incomplete processing of N-terminal secretion peptide , 2012, mAbs.

[14]  G von Heijne,et al.  Patterns of amino acids near signal-sequence cleavage sites. , 1983, European journal of biochemistry.

[15]  D. Hatton,et al.  A high‐yielding CHO transient system: Coexpression of genes encoding EBNA‐1 and GS enhances transient protein expression , 2014, Biotechnology progress.

[16]  Shoba Ranganathan,et al.  Flanking signal and mature peptide residues influence signal peptide cleavage , 2008, BMC Bioinformatics.

[17]  A. J. Mixson,et al.  Alteration in the IL‐2 signal peptide affects secretion of proteins in vitro and in vivo , 2005, The journal of gene medicine.

[18]  D Perlman,et al.  A putative signal peptidase recognition site and sequence in eukaryotic and prokaryotic signal peptides. , 1983, Journal of molecular biology.

[19]  A. Raghani,et al.  Analysis of monoclonal antibody product heterogeneity resulting from alternate cleavage sites of signal peptide. , 2010, Analytical biochemistry.

[20]  Christoph Zehe,et al.  Optimized signal peptides for the development of high expressing CHO cell lines , 2013, Biotechnology and bioengineering.

[21]  G von Heijne,et al.  How signal sequences maintain cleavage specificity. , 1984, Journal of molecular biology.

[22]  M. N. Margolies,et al.  A spontaneous variant of an antidigoxin hybridoma antibody with increased affinity arises from a heavy chain signal peptide mutation. , 1992, Molecular immunology.

[23]  S. Brunak,et al.  SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.

[24]  Kazuhiro Masuda,et al.  Establishment of a signal peptide with cross-species compatibility for functional antibody expression in both Escherichia coli and Chinese hamster ovary cells. , 2014, Biochemical and biophysical research communications.

[25]  Thomas Noll Cells and Culture , 2010 .

[26]  W. Xu,et al.  Developability studies before initiation of process development , 2013, mAbs.

[27]  J. Gordon,et al.  Substrate specificity of eukaryotic signal peptidase. Site-saturation mutagenesis at position -1 regulates cleavage between multiple sites in human pre (delta pro) apolipoprotein A-II. , 1988, The Journal of biological chemistry.

[28]  Alain Van Dorsselaer,et al.  Characterization of therapeutic antibodies and related products. , 2013, Analytical chemistry.

[29]  J I Gordon,et al.  Residues flanking the COOH-terminal C-region of a model eukaryotic signal peptide influence the site of its cleavage by signal peptidase and the extent of coupling of its co-translational translocation and proteolytic processing in vitro. , 1990, The Journal of biological chemistry.

[30]  G. von Heijne,et al.  The code for directing proteins for translocation across ER membrane: SRP cotranslationally recognizes specific features of a signal sequence. , 2015, Journal of molecular biology.

[31]  Yelena Lyubarskaya,et al.  Analysis of recombinant monoclonal antibody isoforms by electrospray ionization mass spectrometry as a strategy for streamlining characterization of recombinant monoclonal antibody charge heterogeneity. , 2006, Analytical biochemistry.