TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles
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Yu-Yen Ou | M. Michael Gromiha | Makiko Suwa | Shu-An Chen | M. Gromiha | Yu-Yen Ou | M. Suwa | Shu-An Chen
[1] Harpreet Kaur,et al. Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods. , 2004, Proteins.
[2] Ingvar Eidhammer,et al. BOMP: a program to predict integral ?barrel outer membrane proteins encoded within genomes of Gram-negative bacteria , 2004, Nucleic Acids Res..
[3] Stavros J. Hamodrakas,et al. A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins , 2004, BMC Bioinformatics.
[4] De-Shuang Huang,et al. Prediction of inter-residue contacts map based on genetic algorithm optimized radial basis function neural network and binary input encoding scheme , 2004, J. Comput. Aided Mol. Des..
[5] D T Jones,et al. Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.
[6] Patrice Koehl,et al. The ASTRAL Compendium in 2004 , 2003, Nucleic Acids Res..
[7] M. Michael Gromiha,et al. A simple statistical method for discriminating outer membrane proteins with better accuracy , 2005, Bioinform..
[8] William H. Press,et al. Numerical Recipes in C, 2nd Edition , 1992 .
[9] Makiko Suwa,et al. Discrimination of outer membrane proteins using machine learning algorithms , 2006, Proteins.
[10] M Michael Gromiha,et al. Motifs in outer membrane protein sequences: applications for discrimination. , 2005, Biophysical chemistry.
[11] Yu-Yen Ou,et al. Protein disorder prediction by condensed PSSM considering propensity for order or disorder , 2006, BMC Bioinformatics.
[12] S. Krishnaswamy,et al. Profiles from structure based sequence alignment of porins can identify ß stranded integral membrane proteins , 2000, Bioinform..
[13] Burkhard Rost,et al. PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins , 2006, Nucleic Acids Res..
[14] Qi Liu,et al. Identification of -barrel membrane proteins based on amino acid composition properties and predicted secondary structure , 2003, Comput. Biol. Chem..
[15] Paul Horton,et al. Discrimination of outer membrane proteins using support vector machines , 2005, Bioinform..
[16] Makiko Suwa,et al. Current developments on beta-barrel membrane proteins: sequence and structure analysis, discrimination and prediction. , 2007, Current protein & peptide science.
[17] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[18] Adam Godzik,et al. Clustering of highly homologous sequences to reduce the size of large protein databases , 2001, Bioinform..
[19] Ao Li,et al. LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST , 2005, Nucleic Acids Res..
[20] William H. Press,et al. Numerical recipes in C , 2002 .
[21] David R. Westhead,et al. TMB-Hunt: a web server to screen sequence sets for transmembrane β-barrel proteins , 2005, Nucleic Acids Res..
[22] Ian H. Witten,et al. Data mining: practical machine learning tools and techniques, 3rd Edition , 1999 .
[23] Shandar Ahmad,et al. Application of residue distribution along the sequence for discriminating outer membrane proteins , 2005, Comput. Biol. Chem..
[24] Zsuzsanna Dosztányi,et al. PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank , 2004, Nucleic Acids Res..
[25] Andrew G. Garrow,et al. A consensus algorithm to screen genomes for novel families of transmembrane β barrel proteins , 2007, Proteins.
[26] Piero Fariselli,et al. A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins , 2002, ISMB.
[27] Zheng Rong Yang,et al. Bio-basis function neural network for prediction of protease cleavage sites in proteins , 2005, IEEE Transactions on Neural Networks.
[28] Yen-Jen Oyang,et al. A novel radial basis function network classifier with centers set by hierarchical clustering , 2005, Proceedings. 2005 IEEE International Joint Conference on Neural Networks, 2005..
[29] Akihiko Konagaya,et al. Selecting effective siRNA sequences by using radial basis function network and decision tree learning , 2006, BMC Bioinformatics.
[30] A G Murzin,et al. SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.
[31] Milton H. Saier,et al. TCDB: the Transporter Classification Database for membrane transport protein analyses and information , 2005, Nucleic Acids Res..