A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells

[1]  Lisong Shen,et al.  Exosomal transfer of tumor-associated macrophage-derived miR-21 confers cisplatin resistance in gastric cancer cells , 2017, Journal of Experimental & Clinical Cancer Research.

[2]  S. Cho,et al.  AHNAK deficiency promotes browning and lipolysis in mice via increased responsiveness to β-adrenergic signalling , 2016, Scientific Reports.

[3]  A. Diez-Juan,et al.  Cardiomyocyte exosomes regulate glycolytic flux in endothelium by direct transfer of GLUT transporters and glycolytic enzymes. , 2016, Cardiovascular research.

[4]  Shivakumar Keerthikumar,et al.  ExoCarta: A Web-Based Compendium of Exosomal Cargo. , 2016, Journal of molecular biology.

[5]  F. Wendler,et al.  Extracellular vesicles round off communication in the nervous system , 2016, Nature Reviews Neuroscience.

[6]  Charlotte Lawson,et al.  Microvesicles and exosomes: new players in metabolic and cardiovascular disease. , 2016, The Journal of endocrinology.

[7]  A. Walker,et al.  Human fibrocyte-derived exosomes accelerate wound healing in genetically diabetic mice. , 2015, Biochemical and biophysical research communications.

[8]  A. Shimatsu,et al.  Thrombospondin 1 as a novel biological marker of obesity and metabolic syndrome. , 2015, Metabolism: clinical and experimental.

[9]  Jan Lötvall,et al.  EVpedia: A community web resource for prokaryotic and eukaryotic extracellular vesicles research. , 2015, Seminars in cell & developmental biology.

[10]  Laura L. Elo,et al.  Comparison of software packages for detecting differential expression in RNA-seq studies , 2013, Briefings Bioinform..

[11]  A. Hasty,et al.  A decade of progress in adipose tissue macrophage biology , 2014, Immunological reviews.

[12]  C. Théry,et al.  Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. , 2014, Annual review of cell and developmental biology.

[13]  M. Claussnitzer,et al.  COL6A3 expression in adipocytes associates with insulin resistance and depends on PPARγ and adipocyte size , 2014, Obesity.

[14]  E. Marbán,et al.  Exosomes as Critical Agents of Cardiac Regeneration Triggered by Cell Therapy , 2014, Stem cell reports.

[15]  Björn Usadel,et al.  Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..

[16]  J. Harrow,et al.  Systematic evaluation of spliced alignment programs for RNA-seq data , 2013, Nature Methods.

[17]  C. Conover,et al.  Preferential impact of pregnancy-associated plasma protein-A deficiency on visceral fat in mice on high-fat diet. , 2013, American journal of physiology. Endocrinology and metabolism.

[18]  Mauricio O. Carneiro,et al.  From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.

[19]  M. Inoue,et al.  Thrombospondin 1 mediates high-fat diet-induced muscle fibrosis and insulin resistance in male mice. , 2013, Endocrinology.

[20]  D. Galas,et al.  The complexity, function and applications of RNA in circulation , 2013, Front. Genet..

[21]  S. Thibodeau,et al.  Characterization of human plasma-derived exosomal RNAs by deep sequencing , 2013, BMC Genomics.

[22]  Marcel H. Schulz,et al.  Probabilistic error correction for RNA sequencing , 2013, Nucleic acids research.

[23]  Graça Raposo,et al.  Extracellular vesicles: Exosomes, microvesicles, and friends , 2013, The Journal of cell biology.

[24]  Davis J. McCarthy,et al.  Count-based differential expression analysis of RNA sequencing data using R and Bioconductor , 2013, Nature Protocols.

[25]  Shinobu Ueda,et al.  Systemically Injected Exosomes Targeted to EGFR Deliver Antitumor MicroRNA to Breast Cancer Cells. , 2013, Molecular therapy : the journal of the American Society of Gene Therapy.

[26]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[27]  J. Wrana,et al.  Exosomes Mediate Stromal Mobilization of Autocrine Wnt-PCP Signaling in Breast Cancer Cell Migration , 2012, Cell.

[28]  P. Altevogt,et al.  Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation , 2012, PLoS biology.

[29]  Hélène Touzet,et al.  SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..

[30]  Jasenka Guduric-Fuchs,et al.  Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types , 2012, BMC Genomics.

[31]  R. Setterquist,et al.  Exosomes: current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials. , 2012, Biochimica et biophysica acta.

[32]  David R. Kelley,et al.  Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.

[33]  Sven Laur,et al.  Robust rank aggregation for gene list integration and meta-analysis , 2012, Bioinform..

[34]  Suresh Mathivanan,et al.  ExoCarta 2012: database of exosomal proteins, RNA and lipids , 2011, Nucleic Acids Res..

[35]  Heng Li,et al.  A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data , 2011, Bioinform..

[36]  Hamid Cheshmi Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers , 2011 .

[37]  D. Peake,et al.  Reducing Plasma Membrane Sphingomyelin Increases Insulin Sensitivity , 2011, Molecular and Cellular Biology.

[38]  G. Ayers,et al.  Amphiregulin Exosomes Increase Cancer Cell Invasion , 2011, Current Biology.

[39]  Fátima Sánchez-Cabo,et al.  Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells , 2011, Nature communications.

[40]  S. Pomeroy,et al.  Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences. , 2011, Nature communications.

[41]  T. Trouard,et al.  Npc1 haploinsufficiency promotes weight gain and metabolic features associated with insulin resistance. , 2011, Human molecular genetics.

[42]  Helga Thorvaldsdóttir,et al.  Integrative Genomics Viewer , 2011, Nature Biotechnology.

[43]  L. Sorokin The impact of the extracellular matrix on inflammation , 2010, Nature Reviews Immunology.

[44]  Manuela Schmidt,et al.  Piezo1 and Piezo2 Are Essential Components of Distinct Mechanically Activated Cation Channels , 2010, Science.

[45]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[46]  Jessica A. Weber,et al.  Export of microRNAs and microRNA-protective protein by mammalian cells , 2010, Nucleic acids research.

[47]  T. Suganami,et al.  Adipose tissue macrophages: their role in adipose tissue remodeling , 2010, Journal of leukocyte biology.

[48]  Sui Huang Faculty Opinions recommendation of An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA. , 2009 .

[49]  A. Poliakov,et al.  Adipose Tissue Exosome-Like Vesicles Mediate Activation of Macrophage-Induced Insulin Resistance , 2009, Diabetes.

[50]  T. LaFramboise Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances , 2009, Nucleic acids research.

[51]  Qinxi Li,et al.  Axin determines cell fate by controlling the p53 activation threshold after DNA damage , 2009, Nature Cell Biology.

[52]  Philipp E. Scherer,et al.  Metabolic Dysregulation and Adipose Tissue Fibrosis: Role of Collagen VI , 2008, Molecular and Cellular Biology.

[53]  Cicek Gercel-Taylor,et al.  MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer. , 2008, Gynecologic oncology.

[54]  Petra Schwille,et al.  Ceramide Triggers Budding of Exosome Vesicles into Multivesicular Endosomes , 2008, Science.

[55]  J. Lötvall,et al.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.

[56]  H. Haase Ahnak, a new player in beta-adrenergic regulation of the cardiac L-type Ca2+ channel. , 2007, Cardiovascular research.

[57]  G. Davis,et al.  Biosynthesis, Remodeling, and Functions During Vascular Morphogenesis and Neovessel Stabilization , 2005 .

[58]  R. Spielman,et al.  Assessment of 115 candidate genes for diabetic nephropathy by transmission/disequilibrium test. , 2005, Diabetes.

[59]  C. Théry,et al.  ICAM-1 on exosomes from mature dendritic cells is critical for efficient naive T-cell priming. , 2005, Blood.

[60]  Olivier Lantz,et al.  Vaccination of metastatic melanoma patients with autologous dendritic cell (DC) derived-exosomes: results of thefirst phase I clinical trial , 2005, Journal of Translational Medicine.

[61]  L. Almasy,et al.  Intercellular adhesion molecule-1 concentration is genetically correlated with insulin resistance, obesity, and HDL concentration in Mexican Americans. , 2004, Diabetes.

[62]  Eric C. Lai,et al.  Notch signaling: control of cell communication and cell fate , 2004, Development.

[63]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[64]  M. Taskinen,et al.  Insulin resistance and adiposity correlate with acute-phase reaction and soluble cell adhesion molecules in type 2 diabetes. , 2003, Atherosclerosis.

[65]  J. Meldolesi,et al.  Regulated exocytosis: a novel, widely expressed system , 2002, Nature Cell Biology.

[66]  T. Yoshikawa,et al.  Intercellular adhesion molecule‐1 (ICAM‐1) polymorphism is associated with diabetic retinopathy in Type 2 diabetes mellitus , 2002, Diabetic medicine : a journal of the British Diabetic Association.

[67]  J. Woodgett,et al.  Extracellular matrix composition determines the transcriptional response to epidermal growth factor receptor activation , 2001, Proceedings of the National Academy of Sciences of the United States of America.