A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells
暂无分享,去创建一个
A. Kasarskis | Bin Zhang | M. Mahajan | E. Schadt | Jun Zhu | R. Sebra | Zhidong Tu | Jialiang Yang | C. Argmann | F. Petralia | K. Allette | Kalyani V. P. Guntur | S. Houten | M. Mahajan | V. Akmaev | R. Sarangarajan | N. Narain | S. Gesta | V. Vishnudas | J. Hagen | Sarah Schuyler | Jyoti Ranjan | Bin Zhang | Kimaada Allette
[1] Lisong Shen,et al. Exosomal transfer of tumor-associated macrophage-derived miR-21 confers cisplatin resistance in gastric cancer cells , 2017, Journal of Experimental & Clinical Cancer Research.
[2] S. Cho,et al. AHNAK deficiency promotes browning and lipolysis in mice via increased responsiveness to β-adrenergic signalling , 2016, Scientific Reports.
[3] A. Diez-Juan,et al. Cardiomyocyte exosomes regulate glycolytic flux in endothelium by direct transfer of GLUT transporters and glycolytic enzymes. , 2016, Cardiovascular research.
[4] Shivakumar Keerthikumar,et al. ExoCarta: A Web-Based Compendium of Exosomal Cargo. , 2016, Journal of molecular biology.
[5] F. Wendler,et al. Extracellular vesicles round off communication in the nervous system , 2016, Nature Reviews Neuroscience.
[6] Charlotte Lawson,et al. Microvesicles and exosomes: new players in metabolic and cardiovascular disease. , 2016, The Journal of endocrinology.
[7] A. Walker,et al. Human fibrocyte-derived exosomes accelerate wound healing in genetically diabetic mice. , 2015, Biochemical and biophysical research communications.
[8] A. Shimatsu,et al. Thrombospondin 1 as a novel biological marker of obesity and metabolic syndrome. , 2015, Metabolism: clinical and experimental.
[9] Jan Lötvall,et al. EVpedia: A community web resource for prokaryotic and eukaryotic extracellular vesicles research. , 2015, Seminars in cell & developmental biology.
[10] Laura L. Elo,et al. Comparison of software packages for detecting differential expression in RNA-seq studies , 2013, Briefings Bioinform..
[11] A. Hasty,et al. A decade of progress in adipose tissue macrophage biology , 2014, Immunological reviews.
[12] C. Théry,et al. Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. , 2014, Annual review of cell and developmental biology.
[13] M. Claussnitzer,et al. COL6A3 expression in adipocytes associates with insulin resistance and depends on PPARγ and adipocyte size , 2014, Obesity.
[14] E. Marbán,et al. Exosomes as Critical Agents of Cardiac Regeneration Triggered by Cell Therapy , 2014, Stem cell reports.
[15] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[16] J. Harrow,et al. Systematic evaluation of spliced alignment programs for RNA-seq data , 2013, Nature Methods.
[17] C. Conover,et al. Preferential impact of pregnancy-associated plasma protein-A deficiency on visceral fat in mice on high-fat diet. , 2013, American journal of physiology. Endocrinology and metabolism.
[18] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[19] M. Inoue,et al. Thrombospondin 1 mediates high-fat diet-induced muscle fibrosis and insulin resistance in male mice. , 2013, Endocrinology.
[20] D. Galas,et al. The complexity, function and applications of RNA in circulation , 2013, Front. Genet..
[21] S. Thibodeau,et al. Characterization of human plasma-derived exosomal RNAs by deep sequencing , 2013, BMC Genomics.
[22] Marcel H. Schulz,et al. Probabilistic error correction for RNA sequencing , 2013, Nucleic acids research.
[23] Graça Raposo,et al. Extracellular vesicles: Exosomes, microvesicles, and friends , 2013, The Journal of cell biology.
[24] Davis J. McCarthy,et al. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor , 2013, Nature Protocols.
[25] Shinobu Ueda,et al. Systemically Injected Exosomes Targeted to EGFR Deliver Antitumor MicroRNA to Breast Cancer Cells. , 2013, Molecular therapy : the journal of the American Society of Gene Therapy.
[26] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[27] J. Wrana,et al. Exosomes Mediate Stromal Mobilization of Autocrine Wnt-PCP Signaling in Breast Cancer Cell Migration , 2012, Cell.
[28] P. Altevogt,et al. Vesiclepedia: A Compendium for Extracellular Vesicles with Continuous Community Annotation , 2012, PLoS biology.
[29] Hélène Touzet,et al. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..
[30] Jasenka Guduric-Fuchs,et al. Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types , 2012, BMC Genomics.
[31] R. Setterquist,et al. Exosomes: current knowledge of their composition, biological functions, and diagnostic and therapeutic potentials. , 2012, Biochimica et biophysica acta.
[32] David R. Kelley,et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks , 2012, Nature Protocols.
[33] Sven Laur,et al. Robust rank aggregation for gene list integration and meta-analysis , 2012, Bioinform..
[34] Suresh Mathivanan,et al. ExoCarta 2012: database of exosomal proteins, RNA and lipids , 2011, Nucleic Acids Res..
[35] Heng Li,et al. A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data , 2011, Bioinform..
[36] Hamid Cheshmi. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers , 2011 .
[37] D. Peake,et al. Reducing Plasma Membrane Sphingomyelin Increases Insulin Sensitivity , 2011, Molecular and Cellular Biology.
[38] G. Ayers,et al. Amphiregulin Exosomes Increase Cancer Cell Invasion , 2011, Current Biology.
[39] Fátima Sánchez-Cabo,et al. Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells , 2011, Nature communications.
[40] S. Pomeroy,et al. Tumour microvesicles contain retrotransposon elements and amplified oncogene sequences. , 2011, Nature communications.
[41] T. Trouard,et al. Npc1 haploinsufficiency promotes weight gain and metabolic features associated with insulin resistance. , 2011, Human molecular genetics.
[42] Helga Thorvaldsdóttir,et al. Integrative Genomics Viewer , 2011, Nature Biotechnology.
[43] L. Sorokin. The impact of the extracellular matrix on inflammation , 2010, Nature Reviews Immunology.
[44] Manuela Schmidt,et al. Piezo1 and Piezo2 Are Essential Components of Distinct Mechanically Activated Cation Channels , 2010, Science.
[45] M. DePristo,et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.
[46] Jessica A. Weber,et al. Export of microRNAs and microRNA-protective protein by mammalian cells , 2010, Nucleic acids research.
[47] T. Suganami,et al. Adipose tissue macrophages: their role in adipose tissue remodeling , 2010, Journal of leukocyte biology.
[48] Sui Huang. Faculty Opinions recommendation of An RNA-dependent RNA polymerase formed by TERT and the RMRP RNA. , 2009 .
[49] A. Poliakov,et al. Adipose Tissue Exosome-Like Vesicles Mediate Activation of Macrophage-Induced Insulin Resistance , 2009, Diabetes.
[50] T. LaFramboise. Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances , 2009, Nucleic acids research.
[51] Qinxi Li,et al. Axin determines cell fate by controlling the p53 activation threshold after DNA damage , 2009, Nature Cell Biology.
[52] Philipp E. Scherer,et al. Metabolic Dysregulation and Adipose Tissue Fibrosis: Role of Collagen VI , 2008, Molecular and Cellular Biology.
[53] Cicek Gercel-Taylor,et al. MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer. , 2008, Gynecologic oncology.
[54] Petra Schwille,et al. Ceramide Triggers Budding of Exosome Vesicles into Multivesicular Endosomes , 2008, Science.
[55] J. Lötvall,et al. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.
[56] H. Haase. Ahnak, a new player in beta-adrenergic regulation of the cardiac L-type Ca2+ channel. , 2007, Cardiovascular research.
[57] G. Davis,et al. Biosynthesis, Remodeling, and Functions During Vascular Morphogenesis and Neovessel Stabilization , 2005 .
[58] R. Spielman,et al. Assessment of 115 candidate genes for diabetic nephropathy by transmission/disequilibrium test. , 2005, Diabetes.
[59] C. Théry,et al. ICAM-1 on exosomes from mature dendritic cells is critical for efficient naive T-cell priming. , 2005, Blood.
[60] Olivier Lantz,et al. Vaccination of metastatic melanoma patients with autologous dendritic cell (DC) derived-exosomes: results of thefirst phase I clinical trial , 2005, Journal of Translational Medicine.
[61] L. Almasy,et al. Intercellular adhesion molecule-1 concentration is genetically correlated with insulin resistance, obesity, and HDL concentration in Mexican Americans. , 2004, Diabetes.
[62] Eric C. Lai,et al. Notch signaling: control of cell communication and cell fate , 2004, Development.
[63] Brad T. Sherman,et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.
[64] M. Taskinen,et al. Insulin resistance and adiposity correlate with acute-phase reaction and soluble cell adhesion molecules in type 2 diabetes. , 2003, Atherosclerosis.
[65] J. Meldolesi,et al. Regulated exocytosis: a novel, widely expressed system , 2002, Nature Cell Biology.
[66] T. Yoshikawa,et al. Intercellular adhesion molecule‐1 (ICAM‐1) polymorphism is associated with diabetic retinopathy in Type 2 diabetes mellitus , 2002, Diabetic medicine : a journal of the British Diabetic Association.
[67] J. Woodgett,et al. Extracellular matrix composition determines the transcriptional response to epidermal growth factor receptor activation , 2001, Proceedings of the National Academy of Sciences of the United States of America.