A Binding Site Tyrosine Shapes Desensitization Kinetics and Agonist Potency at GluR2

Binding of an agonist to the 2-amino-3-(3-hydroxy-5-methyl-4-isoxazolyl)-propionic acid (AMPA) receptor family of the glutamate receptors (GluRs) results in rapid activation of an ion channel. Continuous application results in a non-desensitizing response for agonists like kainate, whereas most other agonists, such as the endogenous agonist (S)-glutamate, induce desensitization. We demonstrate that a highly conserved tyrosine, forming a wedge between the agonist and the N-terminal part of the bi-lobed ligand-binding site, plays a key role in the receptor kinetics as well as agonist potency and selectivity. The AMPA receptor GluR2, with mutations in Tyr-450, were expressed in Xenopus laevis oocytes and characterized in a two-electrode voltage clamp setup. The mutation GluR2(Y450A) renders the receptor highly kainate selective, and rapid application of kainate to outside-out patches induced strongly desensitizing currents. When Tyr-450 was substituted with the larger tryptophan, the (S)-glutamate desensitization is attenuated with a 10-fold increase in steady-state/peak currents (19% compared with 1.9% at the wild type). Furthermore, the tryptophan mutant was introduced into the GluR2-S1S2J ligand binding core construct and co-crystallized with kainate, and the 2.1-Å x-ray structure revealed a slightly more closed ligand binding core as compared with the wild-type complex. Through genetic manipulations combined with structural and electrophysiological analysis, we report that mutations in position 450 invert the potency of two central agonists while concurrently strongly shaping the agonist efficacy and the desensitization kinetics of the AMPA receptor GluR2.

[1]  J. Kastrup,et al.  Structural determinants of agonist-specific kinetics at the ionotropic glutamate receptor 2. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[2]  K. Keinänen,et al.  Stereochemistry of glutamate receptor agonist efficacy: engineering a dual-specificity AMPA/kainate receptor. , 2004, Biochemistry.

[3]  M. Mayer,et al.  Structure and function of glutamate receptor ion channels. , 2004, Annual review of physiology.

[4]  K. Keinänen,et al.  Selective agonist binding of (S)-2-amino-3-(3-hydroxy-5-methyl-4-isoxazolyl)propionic acid (AMPA) and 2S-(2α, 3β, 4β)-2-carboxy-4-(1-methylethenyl)-3-pyrrolidineacetic acid (kainate) receptors: a molecular modeling study , 2003 .

[5]  M. Mayer,et al.  Structural basis for partial agonist action at ionotropic glutamate receptors , 2003, Nature Neuroscience.

[6]  Eric Gouaux,et al.  Mechanisms of activation, inhibition and specificity: crystal structures of the NMDA receptor NR1 ligand‐binding core , 2003, The EMBO journal.

[7]  M. Mayer,et al.  Tuning activation of the AMPA-sensitive GluR2 ion channel by genetic adjustment of agonist-induced conformational changes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[8]  E. Gouaux,et al.  Competitive antagonism of AMPA receptors by ligands of different classes: crystal structure of ATPO bound to the GluR2 ligand-binding core, in comparison with DNQX. , 2003, Journal of medicinal chemistry.

[9]  M. Mayer,et al.  Structural basis for AMPA receptor activation and ligand selectivity: crystal structures of five agonist complexes with the GluR2 ligand-binding core. , 2002, Journal of molecular biology.

[10]  M. Mayer,et al.  Mechanism of glutamate receptor desensitization , 2002, Nature.

[11]  D. Bowie External anions and cations distinguish between AMPA and kainate receptor gating mechanisms , 2002, The Journal of physiology.

[12]  Christian Rosenmund,et al.  Heteromeric AMPA Receptors Assemble with a Preferred Subunit Stoichiometry and Spatial Arrangement , 2001, Neuron.

[13]  T. Hughes,et al.  Subunit Interactions and AMPA Receptor Desensitization , 2001, The Journal of Neuroscience.

[14]  Y. Stern-Bach,et al.  Functional Assembly of AMPA and Kainate Receptors Is Mediated by Several Discrete Protein-Protein Interactions , 2001, Neuron.

[15]  E. Gouaux,et al.  Mechanisms for Activation and Antagonism of an AMPA-Sensitive Glutamate Receptor Crystal Structures of the GluR2 Ligand Binding Core , 2000, Neuron.

[16]  P. Krogsgaard‐Larsen,et al.  Ligands for glutamate receptors: design and therapeutic prospects. , 2000, Journal of medicinal chemistry.

[17]  H. Kijima,et al.  Regulation of Kinetic Properties of GluR2 AMPA Receptor Channels by Alternative Splicing , 2000, The Journal of Neuroscience.

[18]  Eric Gouaux,et al.  Functional characterization of a potassium-selective prokaryotic glutamate receptor , 1999, Nature.

[19]  R. Dingledine,et al.  The glutamate receptor ion channels. , 1999, Pharmacological reviews.

[20]  E. Gouaux,et al.  Structure of a glutamate-receptor ligand-binding core in complex with kainate , 1998, Nature.

[21]  Christian Rosenmund,et al.  A Point Mutation in the Glutamate Binding Site Blocks Desensitization of AMPA Receptors , 1998, Neuron.

[22]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[23]  C F Stevens,et al.  The tetrameric structure of a glutamate receptor channel. , 1998, Science.

[24]  E. Gouaux,et al.  Overexpression of a glutamate receptor (GluR2) ligand binding domain in Escherichia coli: application of a novel protein folding screen. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[25]  E A Merritt,et al.  Raster3D Version 2.0. A program for photorealistic molecular graphics. , 1994, Acta crystallographica. Section D, Biological crystallography.

[26]  A. Kuryatov,et al.  Mutational analysis of the glycine-binding site of the NMDA receptor: Structural similarity with bacterial amino acid-binding proteins , 1994, Neuron.

[27]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[28]  P. Seeburg,et al.  RNA editing in brain controls a determinant of ion flow in glutamate-gated channels , 1991, Cell.

[29]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[30]  J. Zou,et al.  Improved methods for building protein models in electron density maps and the location of errors in these models. , 1991, Acta crystallographica. Section A, Foundations of crystallography.

[31]  S. Heinemann,et al.  Cloning by functional expression of a member of the glutamate receptor family , 1989, Nature.

[32]  E. Gouaux Structure and function of AMPA receptors , 2004, The Journal of physiology.

[33]  T. Liljefors,et al.  The selective activation of the glutamate receptor GluR5 by ATPA is controlled by serine 741. , 2003, Molecular pharmacology.

[34]  Z. Otwinowski,et al.  [20] Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.

[35]  S. Heinemann,et al.  Cloned glutamate receptors. , 1994, Annual review of neuroscience.

[36]  Edinburgh Research Explorer Identification of amino acid residues of the NR2A subunit that control glutamate potency in recombinant NR1/NR2A NMDA receptors , 2022 .