Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

The study of elevational diversity gradients dates back to the foundation of biogeography. Although elevational patterns of plant and animal diversity have been studied for centuries, such patterns have not been reported for microorganisms and remain poorly understood. Here, in an effort to assess the generality of elevational diversity patterns, we examined soil bacterial and plant diversity along an elevation gradient. To gain insight into the forces that structure these patterns, we adopted a multifaceted approach to incorporate information about the structure, diversity, and spatial turnover of montane communities in a phylogenetic context. We found that observed patterns of plant and bacterial diversity were fundamentally different. While bacterial taxon richness and phylogenetic diversity decreased monotonically from the lowest to highest elevations, plants followed a unimodal pattern, with a peak in richness and phylogenetic diversity at mid-elevations. At all elevations bacterial communities had a tendency to be phylogenetically clustered, containing closely related taxa. In contrast, plant communities did not exhibit a uniform phylogenetic structure across the gradient: they became more overdispersed with increasing elevation, containing distantly related taxa. Finally, a metric of phylogenetic beta-diversity showed that bacterial lineages were not randomly distributed, but rather exhibited significant spatial structure across the gradient, whereas plant lineages did not exhibit a significant phylogenetic signal. Quantifying the influence of sample scale in intertaxonomic comparisons remains a challenge. Nevertheless, our findings suggest that the forces structuring microorganism and macroorganism communities along elevational gradients differ.

[1]  David Kenfack,et al.  A general framework for the distance–decay of similarity in ecological communities , 2008, Ecology letters.

[2]  M. Donoghue,et al.  Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales , 2008 .

[3]  C. Lortie An ecological tardis: the implications of facilitation through evolutionary time. , 2007, Trends in ecology & evolution.

[4]  A. Valiente‐Banuet,et al.  Facilitation can increase the phylogenetic diversity of plant communities. , 2007, Ecology letters.

[5]  Joshua B Plotkin,et al.  A statistical theory for sampling species abundances. , 2007, Ecology letters.

[6]  W. Thuiller Biodiversity: Climate change and the ecologist , 2007, Nature.

[7]  Brian J Enquist,et al.  The influence of spatial and size scale on phylogenetic relatedness in tropical forest communities. , 2007, Ecology.

[8]  F. Cohan,et al.  A Systematics for Discovering the Fundamental Units of Bacterial Diversity , 2007, Current Biology.

[9]  J. Elith,et al.  Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment , 2007 .

[10]  K. Hilu,et al.  Phylogeny of basal eudicots: Insights from non-coding and rapidly evolving DNA , 2007 .

[11]  Bruce A. Hungate,et al.  Altered soil microbial community at elevated CO2 leads to loss of soil carbon , 2007, Proceedings of the National Academy of Sciences.

[12]  Jonathan A Eisen,et al.  Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden World of Microbes , 2007, PLoS biology.

[13]  Richard Grenyer,et al.  Preserving the evolutionary potential of floras in biodiversity hotspots , 2007, Nature.

[14]  T. Schmidt,et al.  Isolation and Characterization of Soil Bacteria That Define Terriglobus gen. nov., in the Phylum Acidobacteria , 2007, Applied and Environmental Microbiology.

[15]  Robert I. McDonald,et al.  The distance decay of similarity in ecological communities , 2007 .

[16]  J. Slingsby,et al.  Phylogenetic relatedness limits co-occurrence at fine spatial scales: evidence from the schoenoid sedges (Cyperaceae: Schoeneae) of the Cape Floristic Region, South Africa. , 2007, The American naturalist.

[17]  C. Parmesan Ecological and Evolutionary Responses to Recent Climate Change , 2006 .

[18]  Kalle Ruokolainen,et al.  Analyzing or explaining beta diversity? Understanding the targets of different methods of analysis. , 2006, Ecology.

[19]  J. Zimmerman,et al.  The problem and promise of scale dependency in community phylogenetics. , 2006, Ecology.

[20]  B. Bohannan,et al.  Spatial scaling of microbial biodiversity. , 2006, Trends in ecology & evolution.

[21]  W. Sloan,et al.  Taxa-area relationships for microbes: the unsampled and the unseen. , 2006, Ecology letters.

[22]  Stephen P Hubbell,et al.  The phylogenetic structure of a neotropical forest tree community. , 2006, Ecology.

[23]  Jeannine Cavender-Bares,et al.  Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. , 2006, Ecology.

[24]  B. Bohannan,et al.  Phylogenetic clustering and overdispersion in bacterial communities. , 2006, Ecology.

[25]  Philip Hugenholtz,et al.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes , 2006, Nucleic Acids Res..

[26]  P. Janssen Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes , 2006, Applied and Environmental Microbiology.

[27]  R. Monson,et al.  Winter forest soil respiration controlled by climate and microbial community composition , 2006, Nature.

[28]  Eoin L. Brodie,et al.  Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.

[29]  R. B. Jackson,et al.  The diversity and biogeography of soil bacterial communities. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[30]  R. Knight,et al.  UniFrac: a New Phylogenetic Method for Comparing Microbial Communities , 2005, Applied and Environmental Microbiology.

[31]  E. Vázquez‐Domínguez,et al.  Species turnover on elevational gradients in small rodents , 2005 .

[32]  R. B. Jackson,et al.  Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays , 2005, Applied and Environmental Microbiology.

[33]  Campbell O. Webb,et al.  Phylomatic: tree assembly for applied phylogenetics , 2005 .

[34]  J. Handelsman,et al.  Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness , 2005, Applied and Environmental Microbiology.

[35]  P. Legendre,et al.  ANALYZING BETA DIVERSITY: PARTITIONING THE SPATIAL VARIATION OF COMMUNITY COMPOSITION DATA , 2005 .

[36]  C. McCain ELEVATIONAL GRADIENTS IN DIVERSITY OF SMALL MAMMALS , 2005 .

[37]  Robert K. Colwell,et al.  A new statistical approach for assessing similarity of species composition with incidence and abundance data , 2004 .

[38]  J. Hughes,et al.  A taxa–area relationship for bacteria , 2004, Nature.

[39]  C. Rahbek The role of spatial scale and the perception of large‐scale species‐richness patterns , 2004 .

[40]  Richard Field,et al.  Predictions and tests of climate‐based hypotheses of broad‐scale variation in taxonomic richness , 2004 .

[41]  Thomas Huber,et al.  Bellerophon: a program to detect chimeric sequences in multiple sequence alignments , 2004, Bioinform..

[42]  J. Cavender-Bares,et al.  Phylogenetic Overdispersion in Floridian Oak Communities , 2004, The American Naturalist.

[43]  K. Schleifer,et al.  ARB: a software environment for sequence data. , 2004, Nucleic acids research.

[44]  B. Bohannan,et al.  An ecological perspective on bacterial biodiversity , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[45]  J. Lundberg,et al.  An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants : APG II THE ANGIOSPERM PHYLOGENY GROUP * , 2003 .

[46]  Richard Field,et al.  ENERGY, WATER, AND BROAD‐SCALE GEOGRAPHIC PATTERNS OF SPECIES RICHNESS , 2003 .

[47]  O. Gascuel,et al.  A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.

[48]  K. Fiedler,et al.  Beta diversity of geometrid moths (Lepidoptera: Geometridae) in an Andean montane rainforest , 2003 .

[49]  David R. Anderson,et al.  Model selection and multimodel inference : a practical information-theoretic approach , 2003 .

[50]  T. Garland,et al.  TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE , 2003, Evolution; international journal of organic evolution.

[51]  James H. Brown,et al.  Response to Comment on "Global Biodiversity, Biochemical Kinetics, and the Energetic-Equivalence Rule" , 2003, Science.

[52]  Apgii An update of the angiosperm phylogeny group classification for the orders and families of flowering plants : APGII , 2003 .

[53]  Joshua B. Plotkin,et al.  SAMPLING THE SPECIES COMPOSITION OF A LANDSCAPE , 2002 .

[54]  Campbell O. Webb,et al.  Phylogenies and Community Ecology , 2002 .

[55]  C. Lortie,et al.  Positive interactions among alpine plants increase with stress , 2002, Nature.

[56]  C. Field,et al.  Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in an annual grassland , 2002 .

[57]  Andy Purvis,et al.  Hotspots and the conservation of evolutionary history , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[58]  A. Prinzing The niche of higher plants: evidence for phylogenetic conservatism , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[59]  Mark W. Chase,et al.  Evolution of the angiosperms: calibrating the family tree , 2001, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[60]  J. Hughes,et al.  Counting the Uncountable: Statistical Approaches to Estimating Microbial Diversity , 2001, Applied and Environmental Microbiology.

[61]  A. Knoll,et al.  The biotic crisis and the future of evolution , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[62]  Mark V. Lomolino,et al.  Elevation gradients of species‐density: historical and prospective views , 2001 .

[63]  James H. Brown Mammals on mountainsides : elevational patterns of diversity , 2001 .

[64]  Campbell O. Webb,et al.  Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees , 2000, The American Naturalist.

[65]  D. Relman,et al.  Bacterial diversity within the human subgingival crevice. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[66]  A. Kinzig,et al.  Estimating species-area relationships from plot to landscape scale using species spatial-turnover data , 1999 .

[67]  C. Kuske,et al.  Wide Distribution and Diversity of Members of the Bacterial Kingdom Acidobacterium in the Environment , 1999, Applied and Environmental Microbiology.

[68]  D P Faith,et al.  Phylogenetic pattern and the quantification of organismal biodiversity. , 1994, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[69]  K. R. Clarke,et al.  A Method Of Linking Multivariate Community Structure To Environmental Variables , 1993 .

[70]  E. Martins The Comparative Method in Evolutionary Biology, Paul H. Harvey, Mark D. Pagel. Oxford University Press, Oxford (1991), vii, + 239 Price $24.95 paperback , 1992 .

[71]  D. Faith,et al.  SYSTEMATICS AND CONSERVATION: ON PREDICTING THE FEATURE DIVERSITY OF SUBSETS OF TAXA , 1992, Cladistics : the international journal of the Willi Hennig Society.

[72]  G. C. Stevens The Elevational Gradient in Altitudinal Range: An Extension of Rapoport's Latitudinal Rule to Altitude , 1992, The American Naturalist.

[73]  James H. Brown,et al.  Using Montane Mammals to Model Extinctions Due to Global Change , 1992 .

[74]  Paul H. Williams,et al.  What to protect?—Systematics and the agony of choice , 1991 .

[75]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[76]  V. Torsvik,et al.  High diversity in DNA of soil bacteria , 1990, Applied and environmental microbiology.

[77]  Graham Bell,et al.  A Comparative Method , 1989, The American Naturalist.

[78]  R. Whittaker,et al.  GRADIENT ANALYSIS OF VEGETATION* , 1967, Biological reviews of the Cambridge Philosophical Society.

[79]  R. Whittaker Vegetation of the Siskiyou Mountains, Oregon and California , 1960 .

[80]  P. Jaccard THE DISTRIBUTION OF THE FLORA IN THE ALPINE ZONE.1 , 1912 .