Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau

Soil microbial communities are influenced by climate change drivers such as warming and altered precipitation. These changes create abiotic stresses, including desiccation and nutrient limitation, which act on microbes. However, our understanding of the responses of microbial communities to co-occurring climate change drivers is limited. We surveyed soil bacterial and fungal diversity and composition after a 1-year warming and altered precipitation manipulation in the Tibetan plateau alpine grassland. In isolation, warming and decreased precipitation treatments each had no significant effects on soil bacterial community structure; however, in combination of both treatments altered bacterial community structure (p = 0.03). The main effect of altered precipitation specifically impacted the relative abundances of Bacteroidetes and Gammaproteobacteria compared to the control, while the main effect of warming impacted the relative abundance of Betaproteobacteria. In contrast, the fungal community had no significant response to the treatments after 1-year. Using structural equation modeling (SEM), we found bacterial community composition was positively related to soil moisture. Our results indicate that short-term climate change could cause changes in soil bacterial community through taxonomic shifts. Our work provides new insights into immediate soil microbial responses to short-term stressors acting on an ecosystem that is particularly sensitive to global climate change.

[1]  James R. Cole,et al.  Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming , 2016 .

[2]  Keping Ma,et al.  Precipitation modifies the effects of warming and nitrogen addition on soil microbial communities in northern Chinese grasslands , 2015 .

[3]  S. Frey,et al.  Soil microbial communities vary as much over time as with chronic warming and nitrogen additions , 2015 .

[4]  S. Gibbons,et al.  Arbuscular mycorrhizal fungal communities show low resistance and high resilience to wildfire disturbance , 2015, Plant and Soil.

[5]  Yunfeng Yang,et al.  Responses of Bacterial Communities to Simulated Climate Changes in Alpine Meadow Soil of the Qinghai-Tibet Plateau , 2015, Applied and Environmental Microbiology.

[6]  Corie Lok,et al.  Mining the microbial dark matter , 2015, Nature.

[7]  Jiabao Zhang,et al.  Depth‐related responses of soil microbial communities to experimental warming in an alpine meadow on the Qinghai‐Tibet Plateau , 2015 .

[8]  Jizhong Zhou,et al.  The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands , 2015, The ISME Journal.

[9]  J. Blanchard,et al.  Long-term forest soil warming alters microbial communities in temperate forest soils , 2015, Front. Microbiol..

[10]  Xinquan Zhao,et al.  Non‐growing‐season soil respiration is controlled by freezing and thawing processes in the summer monsoon‐dominated Tibetan alpine grassland , 2014 .

[11]  J. Dukes,et al.  Warming alters potential enzyme activity but precipitation regulates chemical transformations in grass litter exposed to simulated climatic changes , 2014 .

[12]  J. Gilbert,et al.  Characterizing changes in soil bacterial community structure in response to short-term warming. , 2014, FEMS microbiology ecology.

[13]  J. Harte,et al.  Responses of high-altitude graminoids and soil fungi to 20 years of experimental warming. , 2014, Ecology.

[14]  A. Porporato,et al.  A theoretical analysis of microbial eco-physiological and diffusion limitations to carbon cycling in drying soils , 2014 .

[15]  Ximei Zhang,et al.  Soil Bacterial Communities Respond to Climate Changes in a Temperate Steppe , 2013, PloS one.

[16]  Hong Jiang,et al.  The impacts of climate change and human activities on biogeochemical cycles on the Qinghai‐Tibetan Plateau , 2013, Global change biology.

[17]  A. Shade,et al.  Controls on soil microbial community stability under climate change , 2013, Front. Microbiol..

[18]  Jizhong Zhou,et al.  The microbial gene diversity along an elevation gradient of the Tibetan grassland , 2013, The ISME Journal.

[19]  K. Peay,et al.  Strong coupling of plant and fungal community structure across western Amazonian rainforests , 2013, The ISME Journal.

[20]  Colin W. Bell,et al.  Positive climate feedbacks of soil microbial communities in a semi-arid grassland. , 2013, Ecology letters.

[21]  Eoin L. Brodie,et al.  Pre-exposure to drought increases the resistance of tropical forest soil bacterial communities to extended drought , 2012, The ISME Journal.

[22]  J. Blair,et al.  The effect of experimental warming and precipitation change on proteolytic enzyme activity: positive feedbacks to nitrogen availability are not universal , 2012 .

[23]  S. P. Anderson,et al.  Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil , 2012 .

[24]  S. Hoeppner,et al.  Interactive responses of old‐field plant growth and composition to warming and precipitation , 2012 .

[25]  P. Leadley,et al.  Impacts of climate change on the future of biodiversity. , 2012, Ecology letters.

[26]  Amilcare Porporato,et al.  Responses of soil microbial communities to water stress: results from a meta-analysis. , 2012, Ecology.

[27]  R. Aerts,et al.  Summer warming accelerates sub‐arctic peatland nitrogen cycling without changing enzyme pools or microbial community structure , 2012 .

[28]  A. Classen,et al.  Multiple Climate Change Factors Interact to Alter Soil Microbial Community Structure in an Old-Field Ecosystem , 2011 .

[29]  Rob Knight,et al.  UCHIME improves sensitivity and speed of chimera detection , 2011, Bioinform..

[30]  Christine V. Hawkes,et al.  Fungal community responses to precipitation , 2011 .

[31]  Yiqi Luo,et al.  Effect of warming and drought on grassland microbial communities , 2011, The ISME Journal.

[32]  Pete Smith,et al.  Microorganisms and climate change: terrestrial feedbacks and mitigation options , 2010, Nature Reviews Microbiology.

[33]  R. Knight,et al.  Rapid denoising of pyrosequencing amplicon data: exploiting the rank-abundance distribution , 2010, Nature Methods.

[34]  R. Knight,et al.  Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil , 2010 .

[35]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[36]  B. Kimball,et al.  Effect of warming and grazing on litter mass loss and temperature sensitivity of litter and dung mass loss on the Tibetan plateau , 2010 .

[37]  H. Olff,et al.  Vertebrate herbivores influence soil nematodes by modifying plant communities. , 2010, Ecology.

[38]  F. Martin,et al.  454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. , 2009, The New phytologist.

[39]  K. Seifert Progress towards DNA barcoding of fungi , 2009, Molecular ecology resources.

[40]  Eoin L. Brodie,et al.  Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland , 2009, The ISME Journal.

[41]  P. Ciais,et al.  Modeled interactive effects of precipitation, temperature, and [CO2] on ecosystem carbon and water dynamics in different climatic zones , 2008 .

[42]  Stephan C Schuster,et al.  Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment , 2008, Proceedings of the National Academy of Sciences.

[43]  Yanhong Tang,et al.  Storage, patterns and controls of soil organic carbon in the Tibetan grasslands , 2008 .

[44]  Yuping Yan,et al.  Changes in daily climate extremes in the eastern and central Tibetan Plateau during 1961–2005 , 2008 .

[45]  Mark A. Williams Response of microbial communities to water stress in irrigated and drought-prone tallgrass prairie soils , 2007 .

[46]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[47]  T. Balser,et al.  Microbial stress-response physiology and its implications for ecosystem function. , 2007, Ecology.

[48]  R. B. Jackson,et al.  Toward an ecological classification of soil bacteria. , 2007, Ecology.

[49]  A. Michelsen,et al.  Fifteen years of climate change manipulations alter soil microbial communities in a subarctic heath ecosystem , 2007 .

[50]  Eoin L. Brodie,et al.  Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.

[51]  B. Kimball,et al.  Theory and performance of an infrared heater for ecosystem warming , 2005 .

[52]  W. Hang,et al.  Soil microbial responses to experimental warming and clipping in a tallgrass prairie , 2005 .

[53]  C. Field,et al.  Ammonia-oxidizing bacteria respond to multifactorial global change. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Yiqi Luo,et al.  Acclimatization of soil respiration to warming in a tall grass prairie , 2001, Nature.

[55]  I. Burke,et al.  Is bacterial moisture niche a good predictor of shifts in community composition under long-term drought? , 2014, Ecology.

[56]  Yiqi Luo,et al.  Elevated CO2 stimulates net accumulations of carbon and nitrogen in land ecosystems: a meta-analysis. , 2006, Ecology.

[57]  N. Fierer,et al.  Influence of Drying–Rewetting Frequency on Soil Bacterial Community Structure , 2002, Microbial Ecology.