VSEARCH: a versatile open source tool for
暂无分享,去创建一个
Ben Nichols | Frédéric Mahé | Torbjørn Rognes | Christopher Quince | C. Quince | B. Nichols | F. Mahé | Torbjørn Rognes | Ben Nichols
[1] Martin Hartmann,et al. Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.
[2] Kai Song,et al. New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing , 2014, Briefings Bioinform..
[3] Peter M. Rice,et al. The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants , 2009, Nucleic acids research.
[4] Eugene W. Myers,et al. Optimal alignments in linear space , 1988, Comput. Appl. Biosci..
[5] Sean R. Eddy,et al. Rfam 11.0: 10 years of RNA families , 2012, Nucleic Acids Res..
[6] Torbjørn Rognes,et al. Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation , 2011, BMC Bioinformatics.
[7] S. B. Needleman,et al. A general method applicable to the search for similarities in the amino acid sequence of two proteins. , 1970, Journal of molecular biology.
[8] Patrick D Schloss,et al. Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods , 2016, mSystems.
[9] Daniel S. Hirschberg,et al. A linear space algorithm for computing maximal common subsequences , 1975, Commun. ACM.
[10] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[11] S. Carpenter,et al. Planetary boundaries: Guiding human development on a changing planet , 2015, Science.
[12] Robert C. Edgar,et al. BIOINFORMATICS APPLICATIONS NOTE , 2001 .
[13] William A. Walters,et al. QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.
[14] Ronald L. Rivest,et al. The MD5 Message-Digest Algorithm , 1992, RFC.
[15] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[16] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[17] Ben Nichols,et al. Simera: Modelling the PCR Process to Simulate Realistic Chimera Formation , 2016 .
[18] Robert C. Edgar,et al. UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.
[19] Sarah L. Westcott,et al. De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units , 2015, PeerJ.
[20] C. Quince,et al. Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform , 2015, Nucleic acids research.
[21] Eoin L. Brodie,et al. Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB , 2006, Applied and Environmental Microbiology.
[22] Frédéric Mahé,et al. Swarm: robust and fast clustering method for amplicon-based studies , 2014, PeerJ.
[23] Robert C. Edgar,et al. Error filtering, pair assembly and error correction for next-generation sequencing reads , 2015, Bioinform..