Widespread inference of weighted microRNA-mediated gene regulation in cancer transcriptome analysis
暂无分享,去创建一个
Kohei Miyazono | Hiroshi I. Suzuki | K. Miyazono | K. Sugimoto | T. Watabe | Tetsuro Watabe | Hajime Mihira | Koichi Sugimoto | Hajime Mihira
[1] Ash A. Alizadeh,et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling , 2000, Nature.
[2] D. Koller,et al. A module map showing conditional activity of expression modules in cancer , 2004, Nature Genetics.
[3] Ash A. Alizadeh,et al. Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. , 2004, The New England journal of medicine.
[4] J. Castle,et al. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs , 2005, Nature.
[5] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.
[6] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[7] Hans Lassmann,et al. The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution , 2005 .
[8] Mihaela Zavolan,et al. Inference of miRNA targets using evolutionary conservation and pathway analysis , 2007, BMC Bioinformatics.
[9] D. Allison,et al. Microarray data analysis: from disarray to consolidation and consensus , 2006, Nature Reviews Genetics.
[10] V. Ambros,et al. The regulation of genes and genomes by small RNAs , 2007, Development.
[11] L. Lim,et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. , 2007, Molecular cell.
[12] Joshua M. Korn,et al. Comprehensive genomic characterization defines human glioblastoma genes and core pathways , 2008, Nature.
[13] Martin M Matzuk,et al. A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. , 2008, RNA.
[14] Sanghyuk Lee,et al. miRGator: an integrated system for functional annotation of microRNAs , 2007, Nucleic Acids Res..
[15] Chao Cheng,et al. Inferring MicroRNA Activities by Combining Gene Expression with MicroRNA Target Prediction , 2008, PloS one.
[16] Hiroshi I. Suzuki,et al. Modulation of microRNA processing by p53 , 2009, Nature.
[17] Robert L. Judson,et al. Opposing microRNA families regulate self-renewal in mouse embryonic stem cells , 2010, Nature.
[18] Hiroshi I. Suzuki,et al. Dynamics of microRNA biogenesis: crosstalk between p53 network and microRNA processing pathway , 2010, Journal of Molecular Medicine.
[19] R. Shamir,et al. Towards computational prediction of microRNA function and activity , 2010, Nucleic acids research.
[20] Michael T. McManus,et al. Dicer1 and miR-219 Are Required for Normal Oligodendrocyte Differentiation and Myelination , 2010, Neuron.
[21] M. Kimmel,et al. Conflict of interest statement. None declared. , 2010 .
[22] R. Taschereau,et al. Rank–rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures , 2010, Nucleic acids research.
[23] Nicholas T. Ingolia,et al. Mammalian microRNAs predominantly act to decrease target mRNA levels , 2010, Nature.
[24] R. Sharan,et al. Expander: from expression microarrays to networks and functions , 2010, Nature Protocols.
[25] R. Agami,et al. MicroRNA regulation by RNA-binding proteins and its implications for cancer , 2011, Nature Reviews Cancer.
[26] Hyun Cheol Chung,et al. A Densely Interconnected Genome-Wide Network of MicroRNAs and Oncogenic Pathways Revealed Using Gene Expression Signatures , 2011, PLoS genetics.
[27] Ronald S Go,et al. miRNA expression in diffuse large B-cell lymphoma treated with chemoimmunotherapy. , 2011, Blood.
[28] Hiroshi I. Suzuki,et al. MCPIP1 ribonuclease antagonizes dicer and terminates microRNA biogenesis through precursor microRNA degradation. , 2011, Molecular cell.
[29] Zhongming Zhao,et al. Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma , 2012, PLoS Comput. Biol..
[30] A. Ballabio,et al. Identification of microRNA-regulated gene networks by expression analysis of target genes , 2012, Genome research.
[31] S. Chi,et al. An alternative mode of microRNA target recognition , 2012, Nature Structural &Molecular Biology.
[32] David Z. Chen,et al. Architecture of the human regulatory network derived from ENCODE data , 2012, Nature.