A histone methylation-MAPK signaling axis drives durable epithelial-mesenchymal transition in hypoxic pancreas cancer
暂无分享,去创建一个
M. Simon | B. Stanger | E. Stelow | P. Koivunen | Jason R. Pitarresi | Paul J. Myers | M. Lazzara | Kyoung Eun Lee | S. K. Sah-Teli | Marieke K. Jones | Brooke A. Brown | Michelle C. Barbeau | William S. Hart | Kelsey Leong | Nicholas M. Seyler | W. Kane | Todd W. Bauer | S. Adair | Logan A. Campbell
[1] Yanhua Kang,et al. PP2Cδ Controls the Differentiation and Function of Dendritic Cells Through Regulating the NSD2/mTORC2/ACLY Pathway , 2022, Frontiers in Immunology.
[2] M. Boerries,et al. Spatially confined sub-tumor microenvironments in pancreatic cancer , 2021, Cell.
[3] Dana R. Valley,et al. Proteogenomic characterization of pancreatic ductal adenocarcinoma , 2021, Cell.
[4] Jason S. Lewis,et al. ERK Inhibition Improves Anti–PD-L1 Immune Checkpoint Blockade in Preclinical Pancreatic Ductal Adenocarcinoma , 2021, Molecular Cancer Therapeutics.
[5] B. Freedman,et al. Calcium signaling induces a partial EMT , 2021, EMBO reports.
[6] Xiaochen Bo,et al. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data , 2021, Innovation.
[7] M. Geng,et al. 5-Aminonaphthalene derivatives as selective nonnucleoside nuclear receptor binding SET domain-protein 2 (NSD2) inhibitors for the treatment of multiple myeloma. , 2021, European journal of medicinal chemistry.
[8] Indrajeet Patil,et al. Visualizations with statistical details: The 'ggstatsplot' approach , 2021, J. Open Source Softw..
[9] T. Celià-Terrassa,et al. Cell memory of epithelial-mesenchymal plasticity in cancer. , 2021, Current opinion in cell biology.
[10] H. Friess,et al. Hypoxia promotes the metastasis of pancreatic cancer through regulating NOX4/KDM5A-mediated histone methylation modification changes in a HIF1A-independent manner , 2021, Clinical epigenetics.
[11] Youwei Zhu,et al. Tumor-associated macrophages promote pancreatic ductal adenocarcinoma progression by inducing epithelial-to-mesenchymal transition , 2021, Aging.
[12] Beizhong Liu,et al. Hypoxia-induced CREB cooperates MMSET to modify chromatin and promote DKK1 expression in multiple myeloma , 2021, Oncogene.
[13] B. Purow,et al. ERK-dependent suicide gene therapy for selective targeting of RTK/RAS-driven cancers. , 2020, Molecular therapy : the journal of the American Society of Gene Therapy.
[14] J. Onuchic,et al. Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer , 2020, British Journal of Cancer.
[15] Zhaoping Qiu,et al. Tackle Epithelial-Mesenchymal Transition With Epigenetic Drugs in Cancer , 2020, Frontiers in Pharmacology.
[16] K. Lim,et al. Beyond just a tight fortress: contribution of stroma to epithelial-mesenchymal transition in pancreatic cancer , 2020, Signal Transduction and Targeted Therapy.
[17] W. Kaelin,et al. 2-Oxoglutarate-dependent dioxygenases in cancer , 2020, Nature Reviews Cancer.
[18] Jianzhong Su,et al. Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data , 2020, Computational and structural biotechnology journal.
[19] A. Qian,et al. A nicotine-induced positive feedback loop between HIF1A and YAP1 contributes to epithelial-to-mesenchymal transition in pancreatic ductal adenocarcinoma , 2020, Journal of experimental & clinical cancer research : CR.
[20] T. Starr,et al. Loss of HIF1A From Pancreatic Cancer Cells Increases Expression of PPP1R1B and Degradation of p53 to Promote Invasion and Metastasis. , 2020, Gastroenterology.
[21] Anthony T. Papenfuss,et al. tidyHeatmap: an R package for modular heatmap production based on tidy principles , 2020, J. Open Source Softw..
[22] Gang Yang,et al. The role of histone methylation in the development of digestive cancers: a potential direction for cancer management , 2020, Signal Transduction and Targeted Therapy.
[23] Thomas Yu,et al. DreamAI: algorithm for the imputation of proteomics data , 2020, bioRxiv.
[24] M. Ji,et al. The Role of Methyltransferase NSD2 as a Potential Oncogene in Human Solid Tumors , 2020, OncoTargets and therapy.
[25] Laura E. Herring,et al. Low-Dose Vertical Inhibition of the RAF-MEK-ERK Cascade Causes Apoptotic Death of KRAS Mutant Cancers , 2020, Cell reports.
[26] Shuye Tian,et al. Integrative multi-omics analysis of a colon cancer cell line with heterogeneous Wnt activity revealed RUNX2 as an epigenetic regulator of EMT , 2020, Oncogene.
[27] Xiaosheng Wang,et al. HIF1A expression correlates with increased tumor immune and stromal signatures and aggressive phenotypes in human cancers , 2020, Cellular Oncology.
[28] Z. Wang,et al. Curcumin inhibits pancreatic cancer cell invasion and EMT by interfering with tumor‑stromal crosstalk under hypoxic conditions via the IL‑6/ERK/NF‑κB axis. , 2020, Oncology reports.
[29] S. Tam,et al. Hypoxia-Induced Epithelial-Mesenchymal Transition in Cancers: HIF-1α and Beyond , 2020, Frontiers in Oncology.
[30] R. Moffitt,et al. Irreversible JNK1-JUN inhibition by JNK-IN-8 sensitizes pancreatic cancer to 5-FU/FOLFOX chemotherapy. , 2020, JCI insight.
[31] Francisco J. Sánchez-Rivera,et al. Global regulation of the histone mark H3K36me2 underlies epithelial plasticity and metastatic progression. , 2020, Cancer discovery.
[32] Kou-Juey Wu,et al. Epigenetic regulation of epithelial-mesenchymal transition: focusing on hypoxia and TGF-β signaling , 2020, Journal of Biomedical Science.
[33] M. J. van de Vijver,et al. Unsupervised class discovery in pancreatic ductal adenocarcinoma reveals cell-intrinsic mesenchymal features and high concordance between existing classification systems , 2020, Scientific Reports.
[34] Daniele M. Gilkes,et al. Fate-mapping post-hypoxic tumor cells reveals a ROS-resistant phenotype that promotes metastasis , 2019, Nature Communications.
[35] V. Mootha,et al. Oxygen and mammalian cell culture: are we repeating the experiment of Dr. Ox? , 2019, Nature metabolism.
[36] Quan P. Ly,et al. Selective Inhibition of Histone Deacetylases 1/2/6 in Combination with Gemcitabine: A Promising Combination for Pancreatic Cancer Therapy , 2019, Cancers.
[37] Jan Baumbach,et al. Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology , 2019, Bioinform..
[38] C. Teng,et al. Combination treatment strategy for pancreatic cancer involving the novel HDAC inhibitor MPT0E028 with a MEK inhibitor beyond K-Ras status , 2019, Clinical epigenetics.
[39] W. Lu,et al. Epithelial-Mesenchymal Plasticity in Cancer Progression and Metastasis. , 2019, Developmental cell.
[40] Jacob D. Jaffe,et al. Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate , 2019, Science.
[41] P. Schofield,et al. Hypoxia induces rapid changes to histone methylation and reprograms chromatin , 2019, Science.
[42] E. Petricoin,et al. Combination of ERK and autophagy inhibition as a treatment approach for pancreatic cancer , 2019, Nature Medicine.
[43] Xuan Peng,et al. Pancreatic adenocarcinomas with mature blood vessels have better overall survival , 2019, Scientific Reports.
[44] B. Rini,et al. HIF Inhibitors: Status of Current Clinical Development , 2019, Current Oncology Reports.
[45] S. Papa,et al. The ERK and JNK pathways in the regulation of metabolic reprogramming , 2018, Oncogene.
[46] H. Rabitz,et al. Hysteresis control of epithelial-mesenchymal transition dynamics conveys a distinct program with enhanced metastatic ability , 2018, Nature Communications.
[47] P. Koivunen,et al. Cancer-associated 2-oxoglutarate analogues modify histone methylation by inhibiting histone lysine demethylases. , 2018, Journal of molecular biology.
[48] S. Lowe,et al. Tumor Cell‐Intrinsic Factors Underlie Heterogeneity of Immune Cell Infiltration and Response to Immunotherapy , 2018, Immunity.
[49] Anne E Carpenter,et al. CellProfiler 3.0: Next-generation image processing for biology , 2018, PLoS biology.
[50] E. Furth,et al. EMT Subtype Influences Epithelial Plasticity and Mode of Cell Migration. , 2018, Developmental cell.
[51] Leland McInnes,et al. UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction , 2018, ArXiv.
[52] J. Parsons,et al. CD47 Blockade as an Adjuvant Immunotherapy for Resectable Pancreatic Cancer , 2017, Clinical Cancer Research.
[53] S. Potter,et al. Psychrophilic proteases dramatically reduce single-cell RNA-seq artifacts: a molecular atlas of kidney development , 2017, Development.
[54] Qi Zhang,et al. Hypoxia-inducible factor-2α promotes tumor progression and has crosstalk with Wnt/β-catenin signaling in pancreatic cancer , 2017, Molecular Cancer.
[55] P. Kharchenko,et al. Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain , 2017, Nature Biotechnology.
[56] Xueying Sun,et al. Hypoxia induces oncogene yes-associated protein 1 nuclear translocation to promote pancreatic ductal adenocarcinoma invasion via epithelial–mesenchymal transition , 2017, Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine.
[57] D. Speiser,et al. Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data , 2017, bioRxiv.
[58] S. Rocha,et al. KDM2 Family Members are Regulated by HIF-1 in Hypoxia , 2017, Cells.
[59] E. Ben-Jacob,et al. Distinguishing mechanisms underlying EMT tristability , 2017, bioRxiv.
[60] Maolin Yan,et al. Hypoxia induces TWIST-activated epithelial-mesenchymal transition and proliferation of pancreatic cancer cells in vitro and in nude mice. , 2016, Cancer letters.
[61] Minoru Kanehisa,et al. KEGG: new perspectives on genomes, pathways, diseases and drugs , 2016, Nucleic Acids Res..
[62] M. Vogelauer,et al. Histone deacetylase inhibitors provoke a tumor supportive phenotype in pancreatic cancer associated fibroblasts , 2016, Oncotarget.
[63] Roland Eils,et al. Complex heatmaps reveal patterns and correlations in multidimensional genomic data , 2016, Bioinform..
[64] D. Allman,et al. Hif1a Deletion Reveals Pro-Neoplastic Function of B Cells in Pancreatic Neoplasia. , 2016, Cancer discovery.
[65] N. Wlodarchak,et al. PP2A as a master regulator of the cell cycle , 2016, Critical reviews in biochemistry and molecular biology.
[66] R. Gibbs,et al. Genomic analyses identify molecular subtypes of pancreatic cancer , 2016, Nature.
[67] C. Taylor,et al. Understanding complexity in the HIF signaling pathway using systems biology and mathematical modeling , 2016, Journal of Molecular Medicine.
[68] M. Lazzara,et al. EGF augments TGFβ-induced epithelial–mesenchymal transition by promoting SHP2 binding to GAB1 , 2015, Journal of Cell Science.
[69] Joseph L. Herman,et al. Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis , 2015, Nature Methods.
[70] Jen Jen Yeh,et al. Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma , 2015, Nature Genetics.
[71] D. Hedley,et al. Analysis of the intra- and intertumoral heterogeneity of hypoxia in pancreatic cancer patients receiving the nitroimidazole tracer pimonidazole , 2015, British Journal of Cancer.
[72] Mohsin Bashir,et al. Activin-A signaling promotes epithelial–mesenchymal transition, invasion, and metastatic growth of breast cancer , 2015, npj Breast Cancer.
[73] Raphael Gottardo,et al. Orchestrating high-throughput genomic analysis with Bioconductor , 2015, Nature Methods.
[74] Hanspeter Pfister,et al. UpSet: Visualization of Intersecting Sets , 2014, IEEE Transactions on Visualization and Computer Graphics.
[75] M. Loda,et al. Combined MEK and PI3K Inhibition in a Mouse Model of Pancreatic Cancer , 2014, Clinical Cancer Research.
[76] M. Simon,et al. Multivariate signaling regulation by SHP2 differentially controls proliferation and therapeutic response in glioma cells , 2014, Journal of Cell Science.
[77] J. Ochocki,et al. Fructose-1, 6-bisphosphatase opposes renal carcinoma progression , 2014, Nature.
[78] Qiaojun He,et al. Tumor hypoxia enhances non-small cell lung cancer metastasis by selectively promoting macrophage M2 polarization through the activation of ERK signaling , 2014, Oncotarget.
[79] M. Omary,et al. Post-translational modifications of intermediate filament proteins: mechanisms and functions , 2014, Nature Reviews Molecular Cell Biology.
[80] D. Castrillon,et al. Collagen signaling enhances tumor progression after anti-VEGF therapy in a murine model of pancreatic ductal adenocarcinoma. , 2014, Cancer research.
[81] S. McKeown,et al. Defining normoxia, physoxia and hypoxia in tumours-implications for treatment response. , 2014, The British journal of radiology.
[82] J. Espinosa,et al. Transcriptional regulation by hypoxia inducible factors , 2014, Critical reviews in biochemistry and molecular biology.
[83] J. Parsons,et al. Clinical, Molecular and Genetic Validation of a Murine Orthotopic Xenograft Model of Pancreatic Adenocarcinoma Using Fresh Human Specimens , 2013, PloS one.
[84] T. Sawada,et al. Hypoxia Stimulates the EMT of Gastric Cancer Cells through Autocrine TGFβ Signaling , 2013, PloS one.
[85] R. Tomasini,et al. Strengthened glycolysis under hypoxia supports tumor symbiosis and hexosamine biosynthesis in pancreatic adenocarcinoma , 2013, Proceedings of the National Academy of Sciences.
[86] Justin Guinney,et al. GSVA: gene set variation analysis for microarray and RNA-Seq data , 2013, BMC Bioinformatics.
[87] Hongyang Wang,et al. Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data* , 2012, Molecular & Cellular Proteomics.
[88] D. Loerke,et al. Quantitative Imaging of Epithelial Cell Scattering Identifies Specific Inhibitors of Cell Motility and Cell-Cell Dissociation , 2012, Science Signaling.
[89] K. Felix,et al. Experimental in vivo and in vitro treatment with a new histone deacetylase inhibitor belinostat inhibits the growth of pancreatic cancer , 2012, BMC Cancer.
[90] Yujing Sun,et al. The Roles of Mitogen-Activated Protein Kinase Pathways in TGF-β-Induced Epithelial-Mesenchymal Transition , 2012, Journal of signal transduction.
[91] Maximilian Reichert,et al. EMT and Dissemination Precede Pancreatic Tumor Formation , 2012, Cell.
[92] J. Parsons,et al. Inhibition of Focal Adhesion Kinase by PF-562,271 Inhibits the Growth and Metastasis of Pancreatic Cancer Concomitant with Altering the Tumor Microenvironment , 2011, Molecular Cancer Therapeutics.
[93] 吳國瑞,et al. Interplay between HDAC3 and WDR5 Is Essential for Hypoxia-Induced Epithelial-Mesenchymal Transition , 2011 .
[94] Jiannis Ragoussis,et al. High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq. , 2011, Blood.
[95] Igor Jurisica,et al. Hypoxia predicts aggressive growth and spontaneous metastasis formation from orthotopically grown primary xenografts of human pancreatic cancer. , 2011, Cancer research.
[96] P. Spellman,et al. Subtypes of Pancreatic Ductal Adenocarcinoma and Their Differing Responses to Therapy , 2011, Nature Medicine.
[97] Anne E Carpenter,et al. Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software , 2011, Bioinform..
[98] M. Foronda,et al. p38 maintains E-cadherin expression by modulating TAK1–NF-κB during epithelial-to-mesenchymal transition , 2010, Journal of Cell Science.
[99] R. Tomasini,et al. Hypoxia Induced Tumor Metabolic Switch Contributes to Pancreatic Cancer Aggressiveness , 2010, Cancers.
[100] Johan Auwerx,et al. Histone methyl transferases and demethylases; can they link metabolism and transcription? , 2010, Cell metabolism.
[101] Renaud Gaujoux,et al. A flexible R package for nonnegative matrix factorization , 2010, BMC Bioinformatics.
[102] J. Shea,et al. Phenotype and Genotype of Pancreatic Cancer Cell Lines , 2010, Pancreas.
[103] Matthew D. Wilkerson,et al. ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking , 2010, Bioinform..
[104] Trevor Hastie,et al. Regularization Paths for Generalized Linear Models via Coordinate Descent. , 2010, Journal of statistical software.
[105] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[106] Xiao Han,et al. Src kinase up-regulates the ERK cascade through inactivation of protein phosphatase 2A following cerebral ischemia , 2009, BMC Neuroscience.
[107] Thomas D. Schmittgen,et al. Analyzing real-time PCR data by the comparative CT method , 2008, Nature Protocols.
[108] M. Creyghton,et al. A RNA Interference Screen Identifies the Protein Phosphatase 2A Subunit PR55γ as a Stress-Sensitive Inhibitor of c-SRC , 2007, PLoS genetics.
[109] Nils Blüthgen,et al. Competing docking interactions can bring about bistability in the MAPK cascade. , 2007, Biophysical journal.
[110] Hyunsoo Kim,et al. Sparse Non-negative Matrix Factorizations via Alternating Non-negativity-constrained Least Squares , 2006 .
[111] G. Panayotou,et al. Identification of MAPK Phosphorylation Sites and Their Role in the Localization and Activity of Hypoxia-inducible Factor-1α* , 2006, Journal of Biological Chemistry.
[112] Anne E Carpenter,et al. CellProfiler: image analysis software for identifying and quantifying cell phenotypes , 2006, Genome Biology.
[113] G. Camenisch,et al. Integration of Oxygen Signaling at the Consensus HRE , 2005, Science's STKE.
[114] C. Tournier,et al. Selective Regulation of c-jun Gene Expression by Mitogen-Activated Protein Kinases via the 12-O-Tetradecanoylphorbol-13-Acetate- Responsive Element and Myocyte Enhancer Factor 2 Binding Sites , 2005, Molecular and Cellular Biology.
[115] A. Rajasekaran,et al. HPAF-II, a Cell Culture Model to Study Pancreatic Epithelial Cell Structure and Function , 2004, Pancreas.
[116] Pablo Tamayo,et al. Metagenes and molecular pattern discovery using matrix factorization , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[117] Jill P. Mesirov,et al. Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data , 2003, Machine Learning.
[118] F. Real,et al. Genetic profile of 22 pancreatic carcinoma cell lines , 2001, Virchows Archiv.
[119] J. Ferrell,et al. Bistability in the JNK cascade , 2001, Current Biology.
[120] A. Koong,et al. Pancreatic tumors show high levels of hypoxia. , 2000, International journal of radiation oncology, biology, physics.
[121] F. Ross,et al. Estrogen decreases TNF gene expression by blocking JNK activity and the resulting production of c-Jun and JunD. , 1999, The Journal of clinical investigation.
[122] P. Rousseeuw. Silhouettes: a graphical aid to the interpretation and validation of cluster analysis , 1987 .
[123] S. Rogers,et al. Amino acid sequences common to rapidly degraded proteins: the PEST hypothesis. , 1986, Science.
[124] H. Akaike. A new look at the statistical model identification , 1974 .
[125] Taeho Lee,et al. Identification of LEM-14 inhibitor of the oncoprotein NSD2. , 2019, Biochemical and biophysical research communications.
[126] J. Mesirov,et al. The Molecular Signatures Database (MSigDB) hallmark gene set collection. , 2015, Cell systems.
[127] M. Lazzara,et al. ERK1/2 blockade prevents epithelial-mesenchymal transition in lung cancer cells and promotes their sensitivity to EGFR inhibition. , 2014, Cancer research.
[128] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[129] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .