Computational cell analysis for label-free detection of cell properties in a microfluidic laminar flow.

Although a flow cytometer, being one of the most popular research and clinical tools for biomedicine, can analyze cells based on the cell size, internal structures such as granularity, and molecular markers, it provides little information about the physical properties of cells such as cell stiffness and physical interactions between the cell membrane and fluid. In this paper, we propose a computational cell analysis technique using cells' different equilibrium positions in a laminar flow. This method utilizes a spatial coding technique to acquire the spatial position of the cell in a microfluidic channel and then uses mathematical algorithms to calculate the ratio of cell mixtures. Most uniquely, the invented computational cell analysis technique can unequivocally detect the subpopulation of each cell type without labeling even when the cell type shows a substantial overlap in the distribution plot with other cell types, a scenario limiting the use of conventional flow cytometers and machine learning techniques. To prove this concept, we have applied the computation method to distinguish live and fixed cancer cells without labeling, count neutrophils from human blood, and distinguish drug treated cells from untreated cells. Our work paves the way for using computation algorithms and fluidic dynamic properties for cell classification, a label-free method that can potentially classify over 200 types of human cells. Being a highly cost-effective cell analysis method complementary to flow cytometers, our method can offer orthogonal tests in companion with flow cytometers to provide crucial information for biomedical samples.

[1]  Nicole K Henderson-Maclennan,et al.  Deformability-based cell classification and enrichment using inertial microfluidics. , 2011, Lab on a chip.

[2]  L. Wallace,et al.  Computational modeling of extracellular dopamine kinetics suggests low probability of neurotransmitter release , 2015, Synapse.

[3]  Mark Bates,et al.  Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy , 2008, Science.

[4]  J. Lippincott-Schwartz,et al.  Interferometric fluorescent super-resolution microscopy resolves 3D cellular ultrastructure , 2009, Proceedings of the National Academy of Sciences.

[5]  H. Schiöth,et al.  The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints. , 2003, Molecular pharmacology.

[6]  Gretar Tryggvason,et al.  A numerical study of the motion of drops in Poiseuille flow. Part 1. Lateral migration of one drop , 2000, Journal of Fluid Mechanics.

[7]  A. Bhagat,et al.  Enhanced particle filtration in straight microchannels using shear-modulated inertial migration , 2008 .

[8]  Samir Mitragotri,et al.  Continuous Inertial Focusing and Separation of Particles by Shape , 2012 .

[9]  Chun-Hao Chen,et al.  Microfluidics and photonics for Bio‐System‐on‐a‐Chip: A review of advancements in technology towards a microfluidic flow cytometry chip , 2008, Journal of biophotonics.

[10]  Yu-Hwa Lo,et al.  Lab-on-a-Chip Device and System for Point-of-Care Applications , 2013 .

[11]  V. Lien,et al.  Demonstration of two-dimensional fluidic lens for integration into microfluidic flow cytometers , 2006 .

[12]  D. Kraitchman,et al.  Stem cell labeling for noninvasive delivery and tracking in cardiovascular regenerative therapy , 2010, Expert review of cardiovascular therapy.

[13]  Martin Moskovits,et al.  Free-surface microfluidic control of surface-enhanced Raman spectroscopy for the optimized detection of airborne molecules , 2007, Proceedings of the National Academy of Sciences.

[14]  George M. Whitesides,et al.  Integrated fluorescent light source for optofluidic applications , 2005 .

[15]  Luca Pion-Tonachini,et al.  Applying an optical space-time coding method to enhance light scattering signals in microfluidic devices. , 2011, Biomicrofluidics.

[16]  Y. Lo,et al.  Optofluidic device for label-free cell classification from whole blood. , 2015, Methods in molecular biology.

[17]  R. Malekzadeh,et al.  Cytotoxicity of 111In-oxine on mesenchymal stem cells: a time-dependent adverse effect , 2008, Nuclear medicine communications.

[18]  Y. K. Cheung,et al.  1 Supplementary Information for : Microfluidics-based diagnostics of infectious diseases in the developing world , 2011 .

[19]  Y. Lo,et al.  Optofluidic device for label-free cell classification from whole blood. , 2012, Lab on a chip.

[20]  Gary J. Sullivan,et al.  Efficient quadtree coding of images and video , 1994, IEEE Trans. Image Process..

[21]  G. Morrill,et al.  Computational analysis of the extracellular domain of the Ca²⁺-sensing receptor: an alternate model for the Ca²⁺ sensing region. , 2015, Biochemical and biophysical research communications.

[22]  D. Di Carlo,et al.  Sheathless inertial cell ordering for extreme throughput flow cytometry. , 2010, Lab on a chip.

[23]  Tony Jun Huang,et al.  Microfluidic diagnostics for the developing world. , 2012, Lab on a chip.

[24]  Zhe Mei,et al.  Rapid white blood cell detection for peritonitis diagnosis , 2013, Photonics West - Micro and Nano Fabricated Electromechanical and Optical Components.

[25]  Mehmet Toner,et al.  Particle focusing in staged inertial microfluidic devices for flow cytometry. , 2010, Analytical chemistry.

[26]  C. Haslett,et al.  Regulation of cell adhesion molecule expression and function associated with neutrophil apoptosis. , 1995, Blood.

[27]  Mehmet Toner,et al.  A microfluidic device for practical label-free CD4(+) T cell counting of HIV-infected subjects. , 2007, Lab on a chip.

[28]  Gerhard Hessler,et al.  Drug Design Strategies for Targeting G-Protein-Coupled Receptors , 2002 .

[29]  S. Gawad,et al.  Impedance spectroscopy flow cytometry: On‐chip label‐free cell differentiation , 2005, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[30]  Christelle Monat,et al.  Integrated optofluidics: A new river of light , 2007 .

[31]  R. Tompkins,et al.  Equilibrium separation and filtration of particles using differential inertial focusing. , 2008, Analytical chemistry.

[32]  Yeshaiahu Fainman,et al.  Optofluidic devices and applications in photonics, sensing and imaging. , 2012, Lab on a chip.

[33]  S. Holden,et al.  DAOSTORM: an algorithm for high- density super-resolution microscopy , 2011, Nature Methods.

[34]  Gerhard Hessler,et al.  Drug Design Strategies for Targeting G‐Protein‐Coupled Receptors , 2002, Chembiochem : a European journal of chemical biology.

[35]  Luca Pion-Tonachini,et al.  An optical-coding method to measure particle distribution in microfluidic devices. , 2011, AIP advances.

[36]  Zhe Mei,et al.  Label-free Optofluidic Cell Classifier Utilizing Support Vector Machines. , 2013, Sensors and actuators. B, Chemical.

[37]  C. Wittwer,et al.  Flow cytometry: principles and clinical applications in hematology. , 2000, Clinical chemistry.

[38]  Xiao Xu,et al.  The application of cell‐based label‐free technology in drug discovery , 2008, Biotechnology journal.

[39]  H. Flyvbjerg,et al.  Optimized localization-analysis for single-molecule tracking and super-resolution microscopy , 2010, Nature Methods.

[40]  H. Amini,et al.  Label-free cell separation and sorting in microfluidic systems , 2010, Analytical and bioanalytical chemistry.

[41]  Nicole Pamme,et al.  Continuous flow separations in microfluidic devices. , 2007, Lab on a chip.

[42]  Samuel K Sia,et al.  Lab-on-a-chip devices for global health: past studies and future opportunities. , 2007, Lab on a chip.

[43]  Anne E Carpenter,et al.  Label-free cell cycle analysis for high-throughput imaging flow cytometry , 2016, Nature Communications.

[44]  B. Kennedy,et al.  Studies on the neutropenia of cancer chemotherapy , 1974, Cancer.

[45]  G. Whitesides The origins and the future of microfluidics , 2006, Nature.

[46]  Yu-Hwa Lo,et al.  Imaging Cells in Flow Cytometer Using Spatial-Temporal Transformation , 2015, Scientific Reports.

[47]  R. Tompkins,et al.  Continuous inertial focusing, ordering, and separation of particles in microchannels , 2007, Proceedings of the National Academy of Sciences.

[48]  Yu-Hwa Lo,et al.  Review Article: Recent advancements in optofluidic flow cytometer. , 2010, Biomicrofluidics.

[49]  M. Kris,et al.  Reduction by Granulocyte Colony-Stimulating Factor of Fever and Neutropenia Induced by Chemotherapy in Patients with Small-Cell Lung Cancer , 1991 .

[50]  R. Wade,et al.  How does taxol stabilize microtubules? , 1995, Current Biology.

[51]  Kristen L. Helton,et al.  Microfluidic Overview of Global Health Issues Microfluidic Diagnostic Technologies for Global Public Health , 2006 .

[52]  K. Foley,et al.  A label-free optical detection method for biosensors and microfluidics , 2008 .

[53]  Hun-Kuk Park,et al.  AFM-Detected Apoptotic Changes in Morphology and Biophysical Property Caused by Paclitaxel in Ishikawa and HeLa Cells , 2012, PloS one.

[54]  Super-Resolution Fluorescence Microscopy, Localization Microscopy , 2017 .

[55]  J. Chang,et al.  Simultaneous counting of two subsets of leukocytes using fluorescent silica nanoparticles in a sheathless microchip flow cytometer. , 2010, Lab on a chip.

[56]  Guoan Zheng,et al.  Optical imaging techniques in microfluidics and their applications. , 2012, Lab on a chip.

[57]  S. Arnold,et al.  Whispering-gallery-mode biosensing: label-free detection down to single molecules , 2008, Nature Methods.

[58]  G. Whitesides,et al.  Diagnostics for the developing world: microfluidic paper-based analytical devices. , 2010, Analytical chemistry.