Artificial symbiosis for acetone-butanol-ethanol (ABE) fermentation from alkali extracted deshelled corn cobs by co-culture of Clostridium beijerinckii and Clostridium cellulovorans

BackgroundButanol is an industrial commodity and also considered to be a more promising gasoline substitute compared to ethanol. Renewed attention has been paid to solvents (acetone, butanol and ethanol) production from the renewable and inexpensive substrates, for example, lignocellulose, on account of the depletion of oil resources, increasing gasoline prices and deteriorating environment. Limited to current tools for genetic manipulation, it is difficult to develop a genetically engineered microorganism with combined ability of lignocellulose utilization and solvents production. Mixed culture of cellulolytic microorganisms and solventogenic bacteria provides a more convenient and feasible approach for ABE fermentation due to the potential for synergistic utilization of the metabolic pathways of two organisms. But few bacteria pairs succeeded in producing biobutanol of high titer or high productivity without adding butyrate. The aim of this work was to use Clostridium cellulovorans 743B to saccharify lignocellulose and produce butyric acid, instead of adding cellulase and butyric acid to the medium, so that the soluble sugars and butyric acid generated can be subsequently utilized by Clostridium beijerinckii NCIMB 8052 to produce butanol in one pot reaction.ResultsA stable artificial symbiotic system was constructed by co-culturing a celluloytic, anaerobic, butyrate-producing mesophile (C. cellulovorans 743B) and a non-celluloytic, solventogenic bacterium (C. beijerinckii NCIMB 8052) to produce solvents by consolidated bioprocessing (CBP) with alkali extracted deshelled corn cobs (AECC), a low-cost renewable feedstock, as the sole carbon source. Under optimized conditions, the co-culture degraded 68.6 g/L AECC and produced 11.8 g/L solvents (2.64 g/L acetone, 8.30 g/L butanol and 0.87 g/L ethanol) in less than 80 h. Besides, a real-time PCR assay based on the 16S rRNA gene sequence was performed to study the dynamics of the abundance of each strain during the co-culturing process, which figured out the roles of each strain at different periods in the symbiosis.ConclusionOur work illustrated the great potential of artificial symbiosis in biofuel production from lignocellulosic biomass by CBP. The dynamics of the abundance of C. beijerinckii and C. cellulovorans revealed mechanisms of cooperation and competition between the two strains during the co-culture process.

[1]  M. Desvaux,et al.  Cellulose Catabolism by Clostridium cellulolyticum Growing in Batch Culture on Defined Medium , 2000, Applied and Environmental Microbiology.

[2]  E. Gelhaye,et al.  Colonization of Crystalline Cellulose by Clostridium cellulolyticum ATCC 35319 , 1993, Applied and environmental microbiology.

[3]  Stephen R. Hughes,et al.  Production of butanol (a biofuel) from agricultural residues: Part II – Use of corn stover and switchgrass hydrolysates☆ , 2010 .

[4]  E. Petitdemange,et al.  A novel one step process for cellulose fermentation using mesophilic cellulolytic and glycolytic Clostridia , 1983, Biotechnology Letters.

[5]  Shiyuan Hu,et al.  Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum. , 2010, Metabolic engineering.

[6]  Blake A. Simmons,et al.  Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli , 2011, Proceedings of the National Academy of Sciences.

[7]  Nasib Qureshi,et al.  Butanol production by Clostridium beijerinckii. Part I: use of acid and enzyme hydrolyzed corn fiber. , 2008, Bioresource technology.

[8]  H. Fierobe,et al.  The Issue of Secretion in Heterologous Expression of Clostridium cellulolyticum Cellulase-Encoding Genes in Clostridium acetobutylicum ATCC 824 , 2011, Applied and Environmental Microbiology.

[9]  R. Mah,et al.  Isolation and Characterization of an Anaerobic, Cellulolytic Bacterium, Clostridium cellulovorans sp. nov , 1984, Applied and environmental microbiology.

[10]  P. Dürre Biobutanol: An attractive biofuel , 2007, Biotechnology journal.

[11]  R. Doi,et al.  The Clostridium cellulovorans cellulosome: an enzyme complex with plant cell wall degrading activity. , 2001, Chemical record.

[12]  Hans Mooibroek,et al.  Clostridium beijerinckii Cells ExpressingNeocallimastix patriciarum Glycoside Hydrolases Show Enhanced Lichenan Utilization and Solvent Production , 2001, Applied and Environmental Microbiology.

[13]  I. Maddox,et al.  The cause of "acid-crash" and "acidogenic fermentations" during the batch acetone-butanol-ethanol (ABE-) fermentation process. , 2000, Journal of molecular microbiology and biotechnology.

[14]  O. Wolkenhauer,et al.  A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures , 2013, Applied Microbiology and Biotechnology.

[15]  C. F. Brewer,et al.  Determination of the concentrations of oligosaccharides, complex type carbohydrates, and glycoproteins using the phenol-sulfuric acid method. , 1994, Carbohydrate research.

[16]  Atsumi Nakazato,et al.  Butanol Production from Crystalline Cellulose by Cocultured Clostridium thermocellum and Clostridium saccharoperbutylacetonicum N1-4 , 2011, Applied and Environmental Microbiology.

[17]  Han Xiao,et al.  Metabolic engineering of D-xylose pathway in Clostridium beijerinckii to optimize solvent production from xylose mother liquid. , 2012, Metabolic engineering.

[18]  Claudia Schmidt-Dannert,et al.  Applications of quorum sensing in biotechnology , 2010, Applied Microbiology and Biotechnology.

[19]  R. Mah,et al.  Isolation and Characterization of an H2-Oxidizing Thermophilic Methanogen , 1983, Applied and environmental microbiology.

[20]  James C Liao,et al.  Design and characterization of synthetic fungal-bacterial consortia for direct production of isobutanol from cellulosic biomass , 2013, Proceedings of the National Academy of Sciences.

[21]  T. Ezeji,et al.  Butanol production from agricultural residues: Impact of degradation products on Clostridium beijerinckii growth and butanol fermentation , 2007, Biotechnology and bioengineering.

[22]  Nasib Qureshi,et al.  Butanol production from wheat straw hydrolysate using Clostridium beijerinckii , 2007, Bioprocess and biosystems engineering.

[23]  Lee R Lynd,et al.  Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an enzyme-linked immunosorbent assay-based method with application to Clostridium thermocellum batch cultures. , 2003, Analytical chemistry.

[24]  T. Ezeji,et al.  Fermentation of dried distillers' grains and solubles (DDGS) hydrolysates to solvents and value-added products by solventogenic clostridia. , 2008, Bioresource technology.

[25]  Xing Yan,et al.  Effect of key factors on hydrogen production from cellulose in a co-culture of Clostridium thermocellum and Clostridium thermopalmarium. , 2010, Bioresource technology.

[26]  M. Himmel,et al.  The potential of cellulases and cellulosomes for cellulosic waste management. , 2007, Current opinion in biotechnology.

[27]  Youngsoon Um,et al.  Continuous butanol production using suspended and immobilized Clostridium beijerinckii NCIMB 8052 with supplementary butyrate , 2008 .

[28]  G. L. Miller Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar , 1959 .

[29]  P. A. Jensen,et al.  Effect and Modeling of Glucose Inhibition and In Situ Glucose Removal During Enzymatic Hydrolysis of Pretreated Wheat Straw , 2010, Applied biochemistry and biotechnology.

[30]  M. Morange,et al.  Microbial Cell Factories , 2006 .

[31]  G. Seenayya,et al.  PRODUCTION OF ETHANOL FROM VARIOUS PURE AND NATURAL CELLULOSIC BIOMASS BY CLOSTRIDIUM THERMOCELLUM STRAINS SS21 AND SS22 , 1998 .

[32]  L. Lynd,et al.  Consolidated bioprocessing of cellulosic biomass: an update. , 2005, Current opinion in biotechnology.

[33]  D. Block,et al.  Simultaneous consumption of pentose and hexose sugars: an optimal microbial phenotype for efficient fermentation of lignocellulosic biomass , 2010, Applied Microbiology and Biotechnology.

[34]  Shang-Tian Yang,et al.  Fed-batch fermentation for n-butanol production from cassava bagasse hydrolysate in a fibrous bed bioreactor with continuous gas stripping. , 2012, Bioresource technology.

[35]  Nasib Qureshi,et al.  Production of butanol (a biofuel) from agricultural residues: Part I – Use of barley straw hydrolysate☆ , 2010 .

[36]  J. Saddler,et al.  Butanol production from cellulosic substrates by sequential co-culture ofClostridiumthermocellum andC.acetobutylicum , 1985, Biotechnology Letters.

[37]  Ziyong Liu,et al.  Butanol production by Clostridium beijerinckii ATCC 55025 from wheat bran , 2010, Journal of Industrial Microbiology & Biotechnology.

[38]  J. B. Robertson,et al.  Systems of analysis for evaluating fibrous feeds , 1979 .

[39]  Han Xiao,et al.  Economical challenges to microbial producers of butanol: Feedstock, butanol ratio and titer , 2011, Biotechnology journal.

[40]  H. Fierobe,et al.  Production of Heterologous and Chimeric Scaffoldins by Clostridium acetobutylicum ATCC 824 , 2004, Journal of bacteriology.

[41]  Trevor R. Zuroff,et al.  Developing symbiotic consortia for lignocellulosic biofuel production , 2012, Applied Microbiology and Biotechnology.

[42]  James C. Liao,et al.  Metabolic Engineering of Clostridium cellulolyticum for Production of Isobutanol from Cellulose , 2011, Applied and Environmental Microbiology.

[43]  Direct Conversion of Sugars and Organic Acids to Biobutanol by Non-growing Cells of Clostridium spp. Incubated in a Nitrogen-Free Medium , 2013, Applied Biochemistry and Biotechnology.

[44]  J. Giallo,et al.  Metabolism of glucose and cellobiose by cellulolytic mesophilic Clostridium sp. strain H10 , 1983, Applied and environmental microbiology.

[45]  H. Fierobe,et al.  Heterologous Production, Assembly, and Secretion of a Minicellulosome by Clostridium acetobutylicum ATCC 824 , 2005, Applied and Environmental Microbiology.

[46]  B. Cheirsilp,et al.  Development of Acetone Butanol Ethanol (ABE) Production from Palm Pressed Fiber by Mixed Culture of Clostridium sp. and Bacillus sp. , 2011 .