Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae
暂无分享,去创建一个
Bastian Bentlage | Todd H. Oakley | Markos A. Alexandrou | Anita Narwani | C. Delwiche | B. Cardinale | P. Venail | Anita Narwani | M. S. Pankey | John D. Hall | B. Bentlage | Todd H Oakley | Bradley J Cardinale | Markos A Alexandrou | M Sabrina Pankey | Charles F Delwiche | John D Hall | Keith Fritschie | Patrick A Venail | Keith J. Fritschie
[1] Peter B Adler,et al. A niche for neutrality. , 2007, Ecology letters.
[2] Todd H. Oakley,et al. Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. , 2010, Ecology letters.
[3] Alexander Isaev,et al. PyEvolve: a toolkit for statistical modelling of molecular evolution , 2004, BMC Bioinformatics.
[4] P. Chesson. General theory of competitive coexistence in spatially-varying environments. , 2000, Theoretical population biology.
[5] Xuming Zhou,et al. Phylogenomic analyses and improved resolution of Cetartiodactyla. , 2011, Molecular phylogenetics and evolution.
[6] J. Rougemont,et al. A rapid bootstrap algorithm for the RAxML Web servers. , 2008, Systematic biology.
[7] Antagonistic interactions peak at intermediate genetic distance in clinical and laboratory strains of Pseudomonas aeruginosa , 2012, BMC Microbiology.
[8] M. Lürling. Phenotypic plasticity in the green algae Desmodesmus and Scenedesmus with special reference to the induction of defensive morphology , 2003 .
[9] J. Cavender-Bares,et al. The merging of community ecology and phylogenetic biology. , 2009, Ecology letters.
[10] Anton Nekrutenko,et al. Manipulation of FASTQ data with Galaxy , 2010, Bioinform..
[11] R. Macarthur,et al. The Limiting Similarity, Convergence, and Divergence of Coexisting Species , 1967, The American Naturalist.
[12] Mukesh Jain,et al. NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data , 2012, PloS one.
[13] D. Faith. Conservation evaluation and phylogenetic diversity , 1992 .
[14] J. L. Gittleman,et al. Species co-existence and character divergence across carnivores. , 2007, Ecology letters.
[15] P. Keddy,et al. Does phylogenetic relatedness influence the strength of competition among vascular plants , 2008 .
[16] Andrew Gonzalez,et al. Are natural microcosms useful model systems for ecology? , 2004, Trends in ecology & evolution.
[17] C. Davis,et al. Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales , 2012, Proceedings of the National Academy of Sciences.
[18] Debashish Bhattacharya,et al. A molecular timeline for the origin of photosynthetic eukaryotes. , 2004, Molecular biology and evolution.
[19] Cyrille Violle,et al. Phylogenetic limiting similarity and competitive exclusion. , 2011, Ecology letters.
[20] Campbell O. Webb,et al. Phylogenies and Community Ecology , 2002 .
[21] Li Yu,et al. Phylogenomic reconstruction of lactic acid bacteria: an update , 2011, BMC Evolutionary Biology.
[22] C. Darwin. The Origin of Species by Means of Natural Selection, Or, The Preservation of Favoured Races in the Struggle for Life , 2019 .
[23] Stephen P Ellner,et al. Cryptic Population Dynamics: Rapid Evolution Masks Trophic Interactions , 2007, PLoS biology.
[24] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[25] Todd H. Oakley,et al. Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. , 2014, Ecology.
[26] L. Harmon,et al. PHYLOGENETIC ANALYSIS OF ECOMORPHOLOGICAL DIVERGENCE, COMMUNITY STRUCTURE, AND DIVERSIFICATION RATES IN DUSKY SALAMANDERS (PLETHODONTIDAE: DESMOGNATHUS) , 2005, Evolution; international journal of organic evolution.
[27] P. Chesson. Mechanisms of Maintenance of Species Diversity , 2000 .
[28] B. Morgenstern,et al. Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships , 2010, Molecular biology and evolution.
[29] S. Ellner,et al. Rapid evolution drives ecological dynamics in a predator–prey system , 2003, Nature.
[30] David Q. Matus,et al. Broad phylogenomic sampling improves resolution of the animal tree of life , 2008, Nature.
[31] N. Cooper,et al. A common tendency for phylogenetic overdispersion in mammalian assemblages , 2008, Proceedings of the Royal Society B: Biological Sciences.
[32] Lin Jiang,et al. An Experimental Test of Darwin’s Naturalization Hypothesis , 2010, The American Naturalist.
[33] Corinne Da Silva,et al. Phylogenomics Revives Traditional Views on Deep Animal Relationships , 2009, Current Biology.
[34] J. Slingsby,et al. Phylogenetic relatedness limits co-occurrence at fine spatial scales: evidence from the schoenoid sedges (Cyperaceae: Schoeneae) of the Cape Floristic Region, South Africa. , 2007, The American naturalist.
[35] J. Zimmerman,et al. The problem and promise of scale dependency in community phylogenetics. , 2006, Ecology.
[36] Ingo Ebersberger,et al. HaMStR: Profile hidden markov model based search for orthologs in ESTs , 2009, BMC Evolutionary Biology.
[37] H. Philippe,et al. Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough , 2011, PLoS biology.
[38] K. Kettenring,et al. Application of genetic diversity–ecosystem function research to ecological restoration , 2014 .
[39] Campbell O. Webb,et al. Picante: R tools for integrating phylogenies and ecology , 2010, Bioinform..
[40] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[41] C. Wellman,et al. Fragments of the earliest land plants , 2003, Nature.
[42] M. Mayfield,et al. Opposing effects of competitive exclusion on the phylogenetic structure of communities. , 2010, Ecology letters.
[43] J. Stachowicz,et al. Trait vs. phylogenetic diversity as predictors of competition and community composition in herbivorous marine amphipods. , 2013, Ecology letters.
[44] C. Darwin. On the Origin of Species by Means of Natural Selection: Or, The Preservation of Favoured Races in the Struggle for Life , 2019 .
[45] Nathan J B Kraft,et al. Phylogenetic relatedness and the determinants of competitive outcomes. , 2014, Ecology letters.
[46] J. Shultz,et al. Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences , 2010, Nature.
[47] Daniel J. Blankenberg,et al. Galaxy: a platform for interactive large-scale genome analysis. , 2005, Genome research.
[48] Todd H. Oakley,et al. The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment , 2014, Journal of Ecology.
[49] J. Losos. Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. , 2008, Ecology letters.
[50] C. Delwiche,et al. Broad Phylogenomic Sampling and the Sister Lineage of Land Plants , 2012, PloS one.
[51] B. Cardinale,et al. Is the relationship between algal diversity and biomass in North American lakes consistent with biodiversity experiments , 2014 .
[52] Jeannine Cavender-Bares,et al. Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. , 2006, Ecology.
[53] David Posada,et al. ProtTest: selection of best-fit models of protein evolution , 2005, Bioinform..
[54] Todd H. Oakley,et al. Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. , 2013, Ecology letters.
[55] Todd H. Oakley,et al. Phylotranscriptomics to bring the understudied into the fold: monophyletic ostracoda, fossil placement, and pancrustacean phylogeny. , 2013, Molecular biology and evolution.
[56] J. Cavender-Bares,et al. Phylogenetic Overdispersion in Floridian Oak Communities , 2004, The American Naturalist.
[57] Stephen P Ellner,et al. The functional genomics of an eco-evolutionary feedback loop: linking gene expression, trait evolution, and community dynamics. , 2012, Ecology letters.
[58] W. Cornwell,et al. Trees, branches and (square) roots: why evolutionary relatedness is not linearly related to functional distance , 2015 .
[59] Campbell O. Webb,et al. Exotic taxa less related to native species are more invasive. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[60] Tadashi Fukami,et al. Phylogenetic relatedness predicts priority effects in nectar yeast communities , 2012, Proceedings of the Royal Society B: Biological Sciences.
[61] D. Coomes,et al. Competitive interactions between forest trees are driven by species' trait hierarchy, not phylogenetic or functional similarity: implications for forest community assembly. , 2012, Ecology letters.
[62] S. Ellner,et al. Rapid contemporary evolution and clonal food web dynamics , 2009, Philosophical Transactions of the Royal Society B: Biological Sciences.
[63] J. A. Bennett,et al. Increased competition does not lead to increased phylogenetic overdispersion in a native grassland. , 2013, Ecology letters.
[64] Petr Dostál. Plant Competitive Interactions and Invasiveness: Searching for the Effects of Phylogenetic Relatedness and Origin on Competition Intensity , 2011, The American Naturalist.
[65] William Chen,et al. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system , 2014, BMC Bioinformatics.
[66] H. Philippe,et al. Improvement of molecular phylogenetic inference and the phylogeny of Bilateria , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.
[67] J. Klironomos,et al. Influence of Phylogeny on Fungal Community Assembly and Ecosystem Functioning , 2007, Science.
[68] W. Vyverman,et al. Green algae in Lake Tanganyika: is morphological variation a response to seasonal changes? , 2007, Hydrobiologia.
[69] Ladislav Hodač,et al. Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata , 2008 .
[70] S. Kelly,et al. Phylogenetic trees do not reliably predict feature diversity , 2014 .
[71] Naiara Rodríguez-Ezpeleta,et al. Detecting and overcoming systematic errors in genome-scale phylogenies. , 2007, Systematic biology.
[72] Alison Scoville,et al. Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators , 2010, Proceedings of the National Academy of Sciences.
[73] Susan G. Letcher. Phylogenetic structure of angiosperm communities during tropical forest succession , 2010, Proceedings of the Royal Society B: Biological Sciences.
[74] Yi Zheng,et al. iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences , 2011, BMC Bioinformatics.