Statistical Shape Analysis of Surfaces in Medical Images Applied to the Tetralogy of Fallot Heart

There is an increasing need for shape statistics in medical imaging to provide quantitative measures to aid in diagnosis, prognosis and therapy planning. In view of this, we describe methods for computing such statistics by utilizing a well-posed framework for representing the shape of surfaces as currents. Given this representation we can compute an atlas as a mean representation of the population and the main modes of variation around this mean. The modes are computed using principal component analysis (PCA) and applying standard correlation analysis to these allows to correlate shape features with clinical indices. Beyond this, we can compute a generative model of growth using partial least squares regression (PLS) and canonical correlation analysis (CCA). In this chapter, we investigate a clinical application of these statistical techniques on the shape of the heart for patients with repaired Tetralogy of Fallot (rToF), a severe congenital heard defect that requires surgical repair early in infancy. We relate the shape to the severity of the pathology and we build a bi-ventricular growth model of the rToF heart from cross-sectional data which gives insights about the evolution of the disease. Relation between this chapter and our class: This chapter is describing an extension of the mathematical techniques that are described in the course “computational anatomy and physiology” for the analysis of the shape of anatomical organs. It is showing how the analysis of organ deformation across patients can be used to model the impact of remodeling with the hope to get more insight on the pathophysiology.

[1]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[2]  L. Younes,et al.  On the metrics and euler-lagrange equations of computational anatomy. , 2002, Annual review of biomedical engineering.

[3]  F. Bookstein Size and Shape Spaces for Landmark Data in Two Dimensions , 1986 .

[4]  Joan Alexis Glaunès Transport par difféomorphismes de points, de mesures et de courants pour la comparaison de formes et l'anatomie numérique , 2005 .

[5]  Anuj Srivastava,et al.  On Shape of Plane Elastic Curves , 2007, International Journal of Computer Vision.

[6]  C. Small The statistical theory of shape , 1996 .

[7]  L. Younes,et al.  Statistics on diffeomorphisms via tangent space representations , 2004, NeuroImage.

[8]  Alain Trouvé,et al.  A Forward Model to Build Unbiased Atlases from Curves and Surfaces , 2008 .

[9]  H. Akaike A new look at the statistical model identification , 1974 .

[10]  Y. Amit,et al.  Towards a coherent statistical framework for dense deformable template estimation , 2007 .

[11]  Paul M. Thompson,et al.  Inferring brain variability from diffeomorphic deformations of currents: An integrative approach , 2008, Medical Image Anal..

[12]  D. Kendall A Survey of the Statistical Theory of Shape , 1989 .

[13]  Joan Alexis Glaunès,et al.  Surface Matching via Currents , 2005, IPMI.

[14]  J. Hoffman,et al.  The incidence of congenital heart disease. , 2002, Journal of the American College of Cardiology.

[15]  Anuj Srivastava,et al.  Removing Shape-Preserving Transformations in Square-Root Elastic (SRE) Framework for Shape Analysis of Curves , 2007, EMMCVPR.

[16]  Stéphane Mallat,et al.  Matching pursuits with time-frequency dictionaries , 1993, IEEE Trans. Signal Process..

[17]  Michael I. Miller,et al.  Group Actions, Homeomorphisms, and Matching: A General Framework , 2004, International Journal of Computer Vision.

[18]  Tommaso Mansi,et al.  Image-based physiological and statistical models of the heart: application to tetralogy of Fallot. (Modèles physiologiques et statistiques du cœur guidés par imagerie médicale : application à la tétralogie de Fallot) , 2010 .

[19]  Anuj Srivastava,et al.  Riemannian Structures on Shape Spaces: A Framework for Statistical Inferences , 2006, Statistics and Analysis of Shapes.

[20]  Ulf Grenander,et al.  General Pattern Theory: A Mathematical Study of Regular Structures , 1993 .

[21]  Heike Hufnagel A probabilistic framework for point-based shape modeling in medical image analysis , 2011 .

[22]  Boris C. Bernhardt,et al.  A Statistical Model of Right Ventricle in Tetralogy of Fallot for Prediction of Remodelling and Therapy Planning , 2009, MICCAI.

[23]  Guido Gerig,et al.  Unbiased diffeomorphic atlas construction for computational anatomy , 2004, NeuroImage.

[24]  Alain Trouvé,et al.  Diffeomorphisms Groups and Pattern Matching in Image Analysis , 1998, International Journal of Computer Vision.

[25]  Guido Gerig,et al.  Spatiotemporal Atlas Estimation for Developmental Delay Detection in Longitudinal Datasets , 2009, MICCAI.

[26]  Xavier Pennec,et al.  Statistical Computing on Manifolds: From Riemannian Geometry to Computational Anatomy , 2009, ETVC.

[27]  K. Mardia,et al.  Theoretical and Distributional Aspects of Shape Analysis , 1991 .

[28]  D'arcy W. Thompson On growth and form i , 1943 .

[29]  Hervé Delingette,et al.  A Statistical Model for Quantification and Prediction of Cardiac Remodelling: Application to Tetralogy of Fallot , 2011, IEEE Transactions on Medical Imaging.

[30]  D. DuBois,et al.  FIFTH PAPER THE MEASUREMENT OF THE SURFACE AREA OF MAN , 1915 .

[31]  Dorin Comaniciu,et al.  Four-Chamber Heart Modeling and Automatic Segmentation for 3-D Cardiac CT Volumes Using Marginal Space Learning and Steerable Features , 2008, IEEE Transactions on Medical Imaging.

[32]  D. Kendall,et al.  The Riemannian Structure of Euclidean Shape Spaces: A Novel Environment for Statistics , 1993 .

[33]  R. Whitaker,et al.  A Hypothesis Testing Framework for High-Dimensional Shape Models , 2008 .

[34]  Anuj Srivastava,et al.  A Novel Representation for Riemannian Analysis of Elastic Curves in Rn , 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.

[35]  Xavier Pennec,et al.  Intrinsic Statistics on Riemannian Manifolds: Basic Tools for Geometric Measurements , 2006, Journal of Mathematical Imaging and Vision.

[36]  F. Bookstein,et al.  The Measurement of Biological Shape and Shape Change. , 1980 .

[37]  D. Kendall SHAPE MANIFOLDS, PROCRUSTEAN METRICS, AND COMPLEX PROJECTIVE SPACES , 1984 .

[38]  Stanley Durrleman,et al.  Statistical models of currents for measuring the variability of anatomical curves, surfaces and their evolution. (Modèles statistiques de courants pour mesurer la variabilité anatomique de courbes, de surfaces et de leur évolution) , 2010 .

[39]  F. Bookstein,et al.  The Measurement of Biological Shape and Shape Change. , 1979 .

[40]  Alain Trouvé,et al.  Statistical models of sets of curves and surfaces based on currents , 2009, Medical Image Anal..

[41]  J. Bonner D'Arcy Thompson , 1952 .

[42]  Alain Trouvé,et al.  Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms , 2005, International Journal of Computer Vision.