Merging data from genetic and epigenetic approaches to better understand autistic spectrum disorder

Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder that is characterized by a wide range of cognitive and behavioral abnormalities. Genetic research has identified large numbers of genes that contribute to ASD phenotypes. There is compelling evidence that environmental factors contribute to ASD through influences that differentially impact the brain through epigenetic mechanisms. Both genetic mutations and epigenetic influences alter gene expression in different cell types of the brain. Mutations impact the expression of large numbers of genes and also have downstream consequences depending on specific pathways associated with the mutation. Environmental factors impact the expression of sets of genes by altering methylation/hydroxymethylation patterns, local histone modification patterns and chromatin remodeling. Herein, we discuss recent developments in the research of ASD with a focus on epigenetic pathways as a complement to current genetic screening.

[1]  B. Weiss,et al.  Associations between indoor environmental factors and parental-reported autistic spectrum disorders in children 6-8 years of age. , 2009, Neurotoxicology.

[2]  M. D'Esposito,et al.  MeCP2 as a genome-wide modulator: the renewal of an old story , 2012, Front. Gene..

[3]  A. Guidotti,et al.  Epigenetic modifications of GABAergic interneurons are associated with the schizophrenia-like phenotype induced by prenatal stress in mice , 2013, Neuropharmacology.

[4]  Kathryn Roeder,et al.  DAWN: a framework to identify autism genes and subnetworks using gene expression and genetics , 2014, Molecular Autism.

[5]  A. Ronald,et al.  Prenatal Maternal Stress Associated with ADHD and Autistic Traits in early Childhood , 2010, Front. Psychology.

[6]  G. Ming,et al.  Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain , 2011, Cell.

[7]  A. Razin,et al.  Sequence specificity of methylation in higher plant DNA , 1981, Nature.

[8]  Beate Ritz,et al.  Neurodevelopmental Disorders and Prenatal Residential Proximity to Agricultural Pesticides: The CHARGE Study , 2014, Environmental health perspectives.

[9]  J. LaSalle,et al.  Evolving role of MeCP2 in Rett syndrome and autism. , 2009, Epigenomics.

[10]  B. Ames,et al.  Vitamin D hormone regulates serotonin synthesis. Part 1: relevance for autism , 2014, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[11]  K D Robertson,et al.  DNA methylation: past, present and future directions. , 2000, Carcinogenesis.

[12]  C. Lajonchere,et al.  Prenatal and perinatal risk factors in a twin study of autism spectrum disorders. , 2013, Journal of psychiatric research.

[13]  Daisuke Hattori,et al.  DNA Methylation-Related Chromatin Remodeling in Activity-Dependent Bdnf Gene Regulation , 2003, Science.

[14]  Flora Tassone,et al.  Maternal periconceptional folic acid intake and risk of autism spectrum disorders and developmental delay in the CHARGE (CHildhood Autism Risks from Genetics and Environment) case-control study. , 2012, The American journal of clinical nutrition.

[15]  Per Magnus,et al.  Association between maternal use of folic acid supplements and risk of autism spectrum disorders in children. , 2013, JAMA.

[16]  Rachel A. Horowitz-Scherer,et al.  Chromatin Compaction by Human MeCP2 , 2003, Journal of Biological Chemistry.

[17]  Shannon E. Ellis,et al.  Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism , 2014, Nature Communications.

[18]  K. Lesch,et al.  Annual research review: The (epi)genetics of neurodevelopmental disorders in the era of whole-genome sequencing--unveiling the dark matter. , 2015, Journal of child psychology and psychiatry, and allied disciplines.

[19]  Giovanni Coppola,et al.  Tet3 regulates synaptic transmission and homeostatic plasticity via DNA oxidation and repair , 2015, Nature Neuroscience.

[20]  A. Bird,et al.  Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA. , 1992, Nucleic acids research.

[21]  Nelle Lambert,et al.  A Familial Heterozygous Null Mutation of MET in Autism Spectrum Disorder , 2014, Autism research : official journal of the International Society for Autism Research.

[22]  Chuan He,et al.  Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics , 2015, Cell Research.

[23]  S. Zeisel The supply of choline is important for fetal progenitor cells. , 2011, Seminars in cell & developmental biology.

[24]  Seungtai Yoon,et al.  De novo Mutations in Schizophrenia Implicate Chromatin Remodeling and Support a Genetic Overlap with Autism and Intellectual Disability , 2014, Molecular Psychiatry.

[25]  M. Casanova,et al.  Above genetics: Lessons from cerebral development in autism , 2011, Translational neuroscience.

[26]  D. Rossignol,et al.  Environmental toxicants and autism spectrum disorders: a systematic review , 2014, Translational Psychiatry.

[27]  D. Jaffe,et al.  Prefrontal cognitive deficits in mice with altered cerebral cortical GABAergic interneurons , 2014, Behavioural Brain Research.

[28]  Yi-Ju Li,et al.  Epigenetic dysregulation of SHANK3 in brain tissues from individuals with autism spectrum disorders. , 2014, Human molecular genetics.

[29]  Huichun Xu,et al.  MeCP2 modulates gene expression pathways in astrocytes , 2013, Molecular Autism.

[30]  Rong Li,et al.  Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain , 2013, Genome Biology.

[31]  Tao Wang,et al.  Genome-wide DNA hydroxymethylation changes are associated with neurodevelopmental genes in the developing human cerebellum. , 2012, Human molecular genetics.

[32]  Yi Zhang,et al.  TET enzymes, TDG and the dynamics of DNA demethylation , 2013, Nature.

[33]  J. Sweatt,et al.  Epigenetic regulation of memory formation and maintenance. , 2013, Learning & memory.

[34]  S. Balasubramanian,et al.  A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation , 2013, Genome Biology.

[35]  Wei Niu,et al.  Coexpression Networks Implicate Human Midfetal Deep Cortical Projection Neurons in the Pathogenesis of Autism , 2013, Cell.

[36]  Xiaodong Cheng,et al.  Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation , 2012, Nucleic acids research.

[37]  Eric P Hoffman,et al.  Genomics , Intellectual Disability , and Autism , 2012 .

[38]  Gavin D. Meredith,et al.  High Resolution Detection and Analysis of CpG Dinucleotides Methylation Using MBD-Seq Technology , 2011, PloS one.

[39]  T. Bourgeron From the genetic architecture to synaptic plasticity in autism spectrum disorder , 2015, Nature Reviews Neuroscience.

[40]  Chuan He,et al.  Tet Proteins Can Convert 5-Methylcytosine to 5-Formylcytosine and 5-Carboxylcytosine , 2011, Science.

[41]  C. McDougle,et al.  Toward an immune-mediated subtype of autism spectrum disorder , 2015, Brain Research.

[42]  N. Heintz,et al.  MeCP2 binds to 5hmc enriched within active genes and accessible chromatin in the nervous system , 2012, Cell.

[43]  L. Croen,et al.  Maternal Infection During Pregnancy and Autism Spectrum Disorders , 2013, Journal of Autism and Developmental Disorders.

[44]  Stephen T. C. Wong,et al.  MeCP2, a Key Contributor to Neurological Disease, Activates and Represses Transcription , 2008, Science.

[45]  H. Stevens,et al.  Prenatal stress and inhibitory neuron systems: implications for neuropsychiatric disorders , 2014, Molecular Psychiatry.

[46]  S. Horvath,et al.  Functional organization of the transcriptome in human brain , 2008, Nature Neuroscience.

[47]  K. Shiota,et al.  Methyl-CpG-binding Protein, MeCP2, Is a Target Molecule for Maintenance DNA Methyltransferase, Dnmt1* , 2003, The Journal of Biological Chemistry.

[48]  Stepan Melnyk,et al.  Complex epigenetic regulation of Engrailed-2 (EN-2) homeobox gene in the autism cerebellum , 2013, Translational Psychiatry.

[49]  T. Morita,et al.  Detrimental effects of glucocorticoids on neuronal migration during brain development , 2009, Molecular Psychiatry.

[50]  S. Horvath,et al.  A General Framework for Weighted Gene Co-Expression Network Analysis , 2005, Statistical applications in genetics and molecular biology.

[51]  David R. Liu,et al.  Conversion of 5-Methylcytosine to 5- Hydroxymethylcytosine in Mammalian DNA by the MLL Partner TET1 , 2009 .

[52]  S. Horvath,et al.  Integrative Functional Genomic Analyses Implicate Specific Molecular Pathways and Circuits in Autism , 2013, Cell.

[53]  T. Rauch,et al.  Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders and a novel autism candidate gene, RORA, whose protein product is reduced in autistic brain , 2010, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[54]  C. Sismani,et al.  Modulation of the Genome and Epigenome of Individuals Susceptible to Autism by Environmental Risk Factors , 2015, International journal of molecular sciences.

[55]  A. Ferguson-Smith,et al.  Proteins involved in establishment and maintenance of imprinted methylation marks. , 2012, Briefings in functional genomics.

[56]  E. Cook,et al.  Epigenetic mechanisms in autism spectrum disorder. , 2014, International review of neurobiology.

[57]  P. Ashwood,et al.  Evidence supporting an altered immune response in ASD. , 2015, Immunology letters.

[58]  I. Hertz-Picciotto,et al.  Is Maternal Influenza or Fever During Pregnancy Associated with Autism or Developmental Delays? Results from the CHARGE (CHildhood Autism Risks from Genetics and Environment) Study , 2012, Journal of Autism and Developmental Disorders.

[59]  R. Díaz,et al.  The role of nutrition on epigenetic modifications and their implications on health. , 2012, Biochimie.

[60]  E. Reuveni,et al.  DNA methylation analysis of the autistic brain reveals multiple dysregulated biological pathways , 2014, Translational Psychiatry.

[61]  Martin J. Aryee,et al.  A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression , 2013, Epigenetics.

[62]  M. Millan An epigenetic framework for neurodevelopmental disorders: From pathogenesis to potential therapy , 2013, Neuropharmacology.

[63]  F. Tang,et al.  Genomic distribution and possible functions of DNA hydroxymethylation in the brain. , 2014, Genomics.

[64]  Linda C. Schmidt,et al.  Prenatal Vitamins, One-carbon Metabolism Gene Variants, and Risk for Autism , 2011, Epidemiology.

[65]  Alan S. Brown Epidemiologic studies of exposure to prenatal infection and risk of schizophrenia and autism , 2012, Developmental neurobiology.

[66]  Y. Yanagawa,et al.  Prenatal stress delays inhibitory neuron progenitor migration in the developing neocortex , 2013, Psychoneuroendocrinology.

[67]  R. Klose,et al.  ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection , 2013, Biochemical Society transactions.

[68]  A. Bird,et al.  Purification, sequence, and cellular localization of a novel chromosomal protein that binds to Methylated DNA , 1992, Cell.

[69]  Károly Mirnics,et al.  Immune System Disturbances in Schizophrenia , 2014, Biological Psychiatry.

[70]  Emily L. Casanova,et al.  Genetics studies indicate that neural induction and early neuronal maturation are disturbed in autism , 2014, Front. Cell. Neurosci..

[71]  Harrison W. Gabel,et al.  Genome-Wide Activity-Dependent MeCP2 Phosphorylation Regulates Nervous System Development and Function , 2011, Neuron.

[72]  J. LaSalle,et al.  Increased copy number for methylated maternal 15q duplications leads to changes in gene and protein expression in human cortical samples , 2011, Molecular autism.

[73]  Sun-Chong Wang,et al.  Epigenomic profiling reveals DNA-methylation changes associated with major psychosis. , 2008, American journal of human genetics.

[74]  J. David Sweatt,et al.  Evidence That DNA (Cytosine-5) Methyltransferase Regulates Synaptic Plasticity in the Hippocampus* , 2006, Journal of Biological Chemistry.

[75]  C. Betancur,et al.  Etiological heterogeneity in autism spectrum disorders: More than 100 genetic and genomic disorders and still counting , 2011, Brain Research.

[76]  G. Hon,et al.  Base-Resolution Analysis of 5-Hydroxymethylcytosine in the Mammalian Genome , 2012, Cell.

[77]  M. Casanova Autism as a sequence: from heterochronic germinal cell divisions to abnormalities of cell migration and cortical dysplasias. , 2014, Medical hypotheses.

[78]  Steve Horvath,et al.  Molecular Systems Biology 5; Article number 291; doi:10.1038/msb.2009.46 Citation: Molecular Systems Biology 5:291 , 2022 .

[79]  V. Eapen,et al.  Converging Pathways in Autism Spectrum Disorders: Interplay between Synaptic Dysfunction and Immune Responses , 2013, Front. Hum. Neurosci..

[80]  J. Cadet,et al.  TET enzymatic oxidation of 5-methylcytosine, 5-hydroxymethylcytosine and 5-formylcytosine. , 2014, Mutation research. Genetic toxicology and environmental mutagenesis.

[81]  A. Blais,et al.  Constructing transcriptional regulatory networks. , 2005, Genes & development.

[82]  Harrison W. Gabel,et al.  Disruption of DNA methylation-dependent long gene repression in Rett syndrome , 2015, Nature.

[83]  Qiang Shu,et al.  From development to diseases: the role of 5hmC in brain. , 2014, Genomics.

[84]  A. Guidotti,et al.  The Reelin and GAD67 Promoters Are Activated by Epigenetic Drugs That Facilitate the Disruption of Local Repressor Complexes , 2009, Molecular Pharmacology.

[85]  Stephan J. Sanders,et al.  Genotype to phenotype relationships in autism spectrum disorders , 2014, Nature Neuroscience.

[86]  D. Pfaff,et al.  Etiologies underlying sex differences in Autism Spectrum Disorders , 2014, Frontiers in Neuroendocrinology.

[87]  J. Matson,et al.  Intellectual disability and its relationship to autism spectrum disorders. , 2009, Research in developmental disabilities.

[88]  P. Holt,et al.  Maternal Serum Vitamin D Levels During Pregnancy and Offspring Neurocognitive Development , 2012, Pediatrics.

[89]  E. Courchesne,et al.  Prediction of autism by translation and immune/inflammation coexpressed genes in toddlers from pediatric community practices. , 2015, JAMA psychiatry.

[90]  D. Zafeiriou,et al.  Autism spectrum disorders: The quest for genetic syndromes , 2013, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.

[91]  E. Kallay,et al.  Vitamin D and the epigenome , 2014, Front. Physiol..

[92]  Guoping Fan,et al.  Distribution, recognition and regulation of non-CpG methylation in the adult mammalian brain , 2013, Nature Neuroscience.

[93]  Boris Yamrom,et al.  The contribution of de novo coding mutations to autism spectrum disorder , 2014, Nature.

[94]  S. Schiffmann,et al.  Lack of parvalbumin in mice leads to behavioral deficits relevant to all human autism core symptoms and related neural morphofunctional abnormalities , 2015, Translational Psychiatry.

[95]  M. Noshiro,et al.  Adaptive threshold for detecting differentially expressed genes in microarray data - a simulation study to investigate its performance , 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

[96]  P. Ashwood,et al.  Potential cytokine biomarkers in autism spectrum disorders. , 2014, Biomarkers in medicine.

[97]  Rochelle L. Tiedemann,et al.  Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cells. , 2012, Cell reports.

[98]  A. Guidotti,et al.  The Dynamics of DNA Methylation in Schizophrenia and Related Psychiatric Disorders , 2013, Neuropsychopharmacology.

[99]  Andrea Baccarelli,et al.  Epigenetics and environmental chemicals , 2009, Current opinion in pediatrics.

[100]  Eric M. Morrow,et al.  A Genome-wide Association Study of Autism Using the Simons Simplex Collection: Does Reducing Phenotypic Heterogeneity in Autism Increase Genetic Homogeneity? , 2015, Biological Psychiatry.

[101]  M. Rastegar,et al.  Brain Region-Specific Expression of MeCP2 Isoforms Correlates with DNA Methylation within Mecp2 Regulatory Elements , 2014, PloS one.

[102]  A. Hardan,et al.  Behavioral and cognitive characteristics of females and males with autism in the Simons Simplex Collection. , 2014, Journal of the American Academy of Child and Adolescent Psychiatry.

[103]  E. Cook,et al.  Increased binding of MeCP2 to the GAD1 and RELN promoters may be mediated by an enrichment of 5-hmC in autism spectrum disorder (ASD) cerebellum , 2014, Translational Psychiatry.

[104]  P. Pavlidis,et al.  Meta‐Analysis of Gene Expression in Autism Spectrum Disorder , 2015, Autism research : official journal of the International Society for Autism Research.

[105]  S. Santangelo,et al.  Maternal dietary fat intake in association with autism spectrum disorders. , 2013, American journal of epidemiology.

[106]  Christopher S. Poultney,et al.  Synaptic, transcriptional, and chromatin genes disrupted in autism , 2014, Nature.

[107]  M. Wright,et al.  A Complementary Role for the Tetraspanins CD37 and Tssc6 in Cellular Immunity , 2010, The Journal of Immunology.

[108]  S. Girirajan,et al.  Comorbidity of intellectual disability confounds ascertainment of autism: implications for genetic diagnosis , 2015, American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics.

[109]  B. Ren,et al.  Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome , 2012, Cell.

[110]  L. Al-Ayadhi,et al.  Systemic auto-antibodies in children with autism , 2014, Journal of Neuroimmunology.

[111]  A. Bird,et al.  Identification and Characterization of a Family of Mammalian Methyl-CpG Binding Proteins , 1998, Molecular and Cellular Biology.

[112]  R. Dobson,et al.  Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood , 2012, Genome Biology.

[113]  I. Hertz-Picciotto,et al.  MECP2 promoter methylation and X chromosome inactivation in autism , 2008, Autism research : official journal of the International Society for Autism Research.

[114]  A. H. Smits,et al.  Dynamic Readers for 5-(Hydroxy)Methylcytosine and Its Oxidized Derivatives , 2013, Cell.

[115]  Guoping Fan,et al.  Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons , 2010, Nature Neuroscience.

[116]  Yi Zhang,et al.  Genome-wide Analysis Reveals TET- and TDG-Dependent 5-Methylcytosine Oxidation Dynamics , 2013, Cell.

[117]  A. Feinberg,et al.  Common DNA methylation alterations in multiple brain regions in autism , 2014, Molecular Psychiatry.

[118]  Erik T Parner,et al.  Maternal Infection Requiring Hospitalization During Pregnancy and Autism Spectrum Disorders , 2010, Journal of autism and developmental disorders.

[119]  Michael L. Gonzales,et al.  Phosphorylation of Distinct Sites in MeCP2 Modifies Cofactor Associations and the Dynamics of Transcriptional Regulation , 2012, Molecular and Cellular Biology.

[120]  Stephen J. Guter,et al.  Convergence of Genes and Cellular Pathways Dysregulated in Autism Spectrum Disorders , 2014, American journal of human genetics.

[121]  Helen Barbas,et al.  Altered neural connectivity in excitatory and inhibitory cortical circuits in autism , 2013, Front. Hum. Neurosci..

[122]  Matthew D. Schultz,et al.  Global Epigenomic Reconfiguration During Mammalian Brain Development , 2013, Science.

[123]  A. Feinberg,et al.  Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.

[124]  Robert S. Illingworth,et al.  Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state. , 2010, Molecular cell.

[125]  M. Casanova,et al.  Review: Cortical construction in autism spectrum disorder: columns, connectivity and the subplate , 2016, Neuropathology and applied neurobiology.

[126]  R. Steer,et al.  Bisphenol A Exposure in Children With Autism Spectrum Disorders , 2015, Autism research : official journal of the International Society for Autism Research.

[127]  D. Pinto,et al.  Structural variation of chromosomes in autism spectrum disorder. , 2008, American journal of human genetics.

[128]  A. Bird,et al.  Dissection of the methyl-CpG binding domain from the chromosomal protein MeCP2. , 1993, Nucleic acids research.

[129]  Michael Snyder,et al.  Integrated systems analysis reveals a molecular network underlying autism spectrum disorders , 2014, Molecular systems biology.

[130]  Cliff McKinney,et al.  Autism Spectrum Disorder Symptoms and Comorbidity in Emerging Adults , 2016, Child psychiatry and human development.

[131]  S. Horvath,et al.  Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology , 2011, Nature.

[132]  M. Cuccaro,et al.  Genomic and epigenetic evidence for oxytocin receptor deficiency in autism , 2009, BMC medicine.

[133]  N. Heintz,et al.  The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain , 2009, Science.

[134]  D. Geschwind,et al.  Human-Specific Transcriptional Networks in the Brain , 2012, Neuron.

[135]  D. Jacobs,et al.  Hypothesis: a Unifying Mechanism for Nutrition and Chemicals as Lifelong Modulators of DNA Hypomethylation , 2009, Environmental health perspectives.

[136]  A. Lane,et al.  Classification of Children With Autism Spectrum Disorder by Sensory Subtype: A Case for Sensory‐Based Phenotypes , 2014, Autism research : official journal of the International Society for Autism Research.

[137]  C. Hultman,et al.  The familial risk of autism. , 2014, JAMA.

[138]  P. Leder,et al.  A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. , 2008, Developmental cell.

[139]  D. Schendel,et al.  Association of hospitalization for infection in childhood with diagnosis of autism spectrum disorders: a Danish cohort study. , 2010, Archives of pediatrics & adolescent medicine.

[140]  I. Hertz-Picciotto,et al.  Maternal lifestyle and environmental risk factors for autism spectrum disorders. , 2014, International journal of epidemiology.

[141]  Igor Burstyn,et al.  Maternal hospitalization with infection during pregnancy and risk of autism spectrum disorders , 2015, Brain, Behavior, and Immunity.

[142]  Daniele Merico,et al.  Using extended pedigrees to identify novel autism spectrum disorder (ASD) candidate genes , 2014, Human Genetics.

[143]  S. Balasubramanian,et al.  5-Hydroxymethylcytosine is a predominantly stable DNA modification. , 2014, Nature chemistry.

[144]  Hilmar Bading,et al.  Rescue of aging-associated decline in Dnmt3a2 expression restores cognitive abilities , 2012, Nature Neuroscience.

[145]  Irva Hertz-Picciotto,et al.  Traffic-related air pollution, particulate matter, and autism. , 2013, JAMA psychiatry.

[146]  D. Zafeiriou,et al.  The Serotonergic System: Its Role in Pathogenesis and Early Developmental Treatment of Autism , 2009, Current neuropharmacology.

[147]  H. Zoghbi,et al.  Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2 , 1999, Nature Genetics.

[148]  D. Armstrong Neuropathology of Rett syndrome. , 2002, Mental retardation and developmental disabilities research reviews.

[149]  Timothy E. Reddy,et al.  Dynamic DNA methylation across diverse human cell lines and tissues , 2013, Genome research.

[150]  L. Schaevitz,et al.  Gene-environment interactions and epigenetic pathways in autism: the importance of one-carbon metabolism. , 2012, ILAR journal.

[151]  R. Plomin,et al.  Methylomic analysis of monozygotic twins discordant for autism spectrum disorder and related behavioural traits , 2013, Molecular Psychiatry.

[152]  P. Jin,et al.  Integrating DNA methylation dynamics into a framework for understanding epigenetic codes , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.

[153]  J. Shendure,et al.  A de novo convergence of autism genetics and molecular neuroscience , 2014, Trends in Neurosciences.

[154]  Mogens Vestergaard,et al.  Prenatal valproate exposure and risk of autism spectrum disorders and childhood autism. , 2013, JAMA.

[155]  Janine M. LaSalle,et al.  A genomic point-of-view on environmental factors influencing the human brain methylome , 2011, Epigenetics.

[156]  M. Kyba,et al.  Zinc Finger Protein ZFP57 Requires Its Co-factor to Recruit DNA Methyltransferases and Maintains DNA Methylation Imprint in Embryonic Stem Cells via Its Transcriptional Repression Domain* , 2011, The Journal of Biological Chemistry.

[157]  A. Ting,et al.  Brain Transcriptional and Epigenetic Associations with Autism , 2012, PloS one.

[158]  I. Pogribny,et al.  Elevated 5-hydroxymethylcytosine in the Engrailed-2 (EN-2) promoter is associated with increased gene expression and decreased MeCP2 binding in autism cerebellum , 2014, Translational Psychiatry.

[159]  Subit Barua,et al.  Lifestyle, pregnancy and epigenetic effects. , 2015, Epigenomics.

[160]  Irene Knuesel,et al.  Maternal immune activation and abnormal brain development across CNS disorders , 2014, Nature Reviews Neurology.

[161]  Robert Andrews,et al.  Inter-individual variability contrasts with regional homogeneity in the human brain DNA methylome , 2015, Nucleic acids research.

[162]  G. Pavesi,et al.  MeCP2 post-translational modifications: a mechanism to control its involvement in synaptic plasticity and homeostasis? , 2014, Front. Cell. Neurosci..

[163]  W. Doerfler,et al.  DNA methylation and gene activity. , 1983, Annual review of biochemistry.

[164]  I. Hertz-Picciotto,et al.  Maternal Immune-Mediated Conditions, Autism Spectrum Disorders, and Developmental Delay , 2013, Journal of autism and developmental disorders.

[165]  J. Thomson,et al.  CpG island chromatin is shaped by recruitment of ZF-CxxC proteins. , 2013, Cold Spring Harbor perspectives in biology.

[166]  E. London,et al.  The Neuropathology of Autism: A Review , 2005, Journal of neuropathology and experimental neurology.

[167]  J. Darnell,et al.  The translation of translational control by FMRP: therapeutic targets for FXS , 2013, Nature Neuroscience.

[168]  Colin A. Johnson,et al.  Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex , 1998, Nature.

[169]  D. Jackson,et al.  Tetraspanins-structural and signalling scaffolds that regulate platelet function. , 2007, Mini reviews in medicinal chemistry.

[170]  M. Phillips,et al.  Dendritic spine dysgenesis in autism related disorders , 2015, Neuroscience Letters.

[171]  M. Kas,et al.  Epigenetic dynamics in psychiatric disorders: Environmental programming of neurodevelopmental processes , 2013, Neuroscience & Biobehavioral Reviews.

[172]  A. Bird,et al.  Methylation-Induced Repression— Belts, Braces, and Chromatin , 1999, Cell.

[173]  Yi Zhang,et al.  Role of Tet proteins in enhancer activity and telomere elongation , 2014, Genes & development.

[174]  Eric C. Griffith,et al.  Derepression of BDNF Transcription Involves Calcium-Dependent Phosphorylation of MeCP2 , 2003, Science.

[175]  Patricia Tueting,et al.  Brain-Derived Neurotrophic Factor Epigenetic Modifications Associated with Schizophrenia-like Phenotype Induced by Prenatal Stress in Mice , 2015, Biological Psychiatry.

[176]  S. Sidney,et al.  The health status of adults on the autism spectrum , 2015, Autism : the international journal of research and practice.

[177]  B. Stevens,et al.  Phagocytic glial cells: sculpting synaptic circuits in the developing nervous system , 2013, Current Opinion in Neurobiology.

[178]  P. Ashwood,et al.  Cytokine dysregulation in autism spectrum disorders (ASD): possible role of the environment. , 2013, Neurotoxicology and teratology.

[179]  M. Giustetto,et al.  Synaptic Pruning by Microglia Is Necessary for Normal Brain Development , 2011, Science.

[180]  Laura J. Scott,et al.  Psychiatric genome-wide association study analyses implicate neuronal, immune and histone pathways , 2015, Nature Neuroscience.

[181]  Masahiko Watanabe,et al.  Cerebellar Plasticity and Motor Learning Deficits in a Copy Number Variation Mouse Model of Autism , 2014, Nature Communications.

[182]  J. LaSalle,et al.  Reduced MeCP2 Expression is Frequent in Autism Frontal Cortex and Correlates with Aberrant MECP2 Promoter Methylation , 2006, Epigenetics.