Adeno-associated virus as a gene therapy vector: vector development, production and clinical applications.

Adeno-associated virus (AAV) has emerged as an attractive vector for gene therapy. AAV vectors have successfully been utilized to promote sustained gene expression in a variety of tissues such as muscle, eye, brain, liver, and lung. As the significance of AAV as a gene therapy vector has been realized over the past years, recent developments in recombinant AAV (rAAV) production and purification have revolutionized the AAV field. It is now possible to produce high yields of vector (10(12)-10(13) genome-containing particles per mL) that are free of contaminating cellular and helper virus proteins. Such vectors have been successfully used in preclinical applications in animal models such as those of hemophilia, lysosomal storage diseases and vision deficiency, all of which have shown therapeutic benefits from rAAV treatment. Clinical trials using rAAV2 for the treatment of hemophilia B, cystic fibrosis, alpha-1-antitrypsin deficiency, and Canavan disease have begun, and reports from these phase I trials support the safety seen in preclinical trials. Eventually, tissue-specific vectors that can potentially evade the immune system will be required to optimize success in gene therapy. In recent years, this has led to the development of retargeted rAAV2 vectors and the identification and characterization of new serotypes from human and nonhuman primates that could potentially achieve these goals. AAV virologists and gene therapists alike have just begun to scratch the surface in terms of the utility of this small virus in a clinical setting. In this chapter, we will provide a comprehensive overview of the recent advances in rAAV vector production and purification, vector development, and clinical applications.

[1]  M. R. Delgado Alvira,et al.  Adeno-associated viruses undergo substantial evolution in primates during natural infections , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Terence R Flotte,et al.  Phase I trial of intramuscular injection of a recombinant adeno-associated virus alpha 1-antitrypsin (rAAV2-CB-hAAT) gene vector to AAT-deficient adults. , 2004, Human gene therapy.

[3]  Theresa A. Storm,et al.  Preclinical in vivo evaluation of pseudotyped adeno-associated virus vectors for liver gene therapy. , 2003, Blood.

[4]  M. S. Chapman,et al.  The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[5]  M. Atkinson,et al.  Efficient ex vivo transduction of pancreatic islet cells with recombinant adeno-associated virus vectors. , 2001, Diabetes.

[6]  B. Hub,et al.  Endocytosis of Adeno-Associated Virus Type 5 Leads to Accumulation of Virus Particles in the Golgi Compartment , 2002, Journal of Virology.

[7]  N. Muzyczka,et al.  Identification of Amino Acid Residues in the Capsid Proteins of Adeno-Associated Virus Type 2 That Contribute to Heparan Sulfate Proteoglycan Binding † , 2002 .

[8]  I. Nabi,et al.  A viral phospholipase A2 is required for parvovirus infectivity. , 2001, Developmental cell.

[9]  P. Collis,et al.  Adeno-associated virus general transduction vectors: analysis of proviral structures , 1988, Journal of virology.

[10]  J. Janik,et al.  Herpes Simplex Virus Types 1 and 2 Completely Help Adenovirus-Associated Virus Replication , 1981, Journal of virology.

[11]  T. Flotte,et al.  Latent Adeno-Associated Virus Infection Elicits Humoral but Not Cell-Mediated Immune Responses in a Nonhuman Primate Model , 1999, Journal of Virology.

[12]  M S Chapman,et al.  The three-dimensional structure of canine parvovirus and its functional implications. , 1991, Science.

[13]  J. Janik,et al.  Locations of adenovirus genes required for the replication of adenovirus-associated virus. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[14]  M. Hallek,et al.  In vitro selection of viral vectors with modified tropism: the adeno-associated virus display. , 2003, Molecular therapy : the journal of the American Society of Gene Therapy.

[15]  Wadih Arap,et al.  Random peptide libraries displayed on adeno-associated virus to select for targeted gene therapy vectors , 2003, Nature Biotechnology.

[16]  W. Richardson,et al.  Requirement for either early region 1a or early region 1b adenovirus gene products in the helper effect for adeno-associated virus , 1984, Journal of virology.

[17]  H. Zentgraf,et al.  Assembly of viruslike particles by recombinant structural proteins of adeno-associated virus type 2 in insect cells , 1992, Journal of virology.

[18]  Michael Hallek,et al.  Development of efficient viral vectors selective for vascular smooth muscle cells. , 2004, Molecular therapy : the journal of the American Society of Gene Therapy.

[19]  H. zur Hausen,et al.  Analysis of proteins, helper dependence, and seroepidemiology of a new human parvovirus. , 1984, Virology.

[20]  N. Muzyczka,et al.  The cellular transcription factor SP1 and an unknown cellular protein are required to mediate Rep protein activation of the adeno-associated virus p19 promoter , 1997, Journal of virology.

[21]  T. Flotte Immune responses to recombinant adeno-associated virus vectors: putting preclinical findings into perspective. , 2004, Human gene therapy.

[22]  R. Samulski,et al.  Adenovirus E1B 55-Mr polypeptide facilitates timely cytoplasmic accumulation of adeno-associated virus mRNAs , 1988, Journal of virology.

[23]  J. Kleinschmidt,et al.  Identification of a Heparin-Binding Motif on Adeno-Associated Virus Type 2 Capsids , 2003, Journal of Virology.

[24]  N. Muzyczka,et al.  Adeno-Associated Virus Type 2 VP2 Capsid Protein Is Nonessential and Can Tolerate Large Peptide Insertions at Its N Terminus , 2004, Journal of Virology.

[25]  R. Samulski,et al.  Efficient long-term gene transfer into muscle tissue of immunocompetent mice by adeno-associated virus vector , 1996, Journal of virology.

[26]  N. Muzyczka,et al.  Sequences required for coordinate induction of adeno-associated virus p19 and p40 promoters by Rep protein , 1991, Journal of virology.

[27]  N. Muzyczka Use of adeno-associated virus as a general transduction vector for mammalian cells. , 1992, Current topics in microbiology and immunology.

[28]  R. Linden,et al.  The cryptic life style of adenoassociated virus , 1995, BioEssays : news and reviews in molecular, cellular and developmental biology.

[29]  G. Deléage,et al.  Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2 , 1999, Nature Medicine.

[30]  Sanjay Kumar,et al.  Conjugate-Based Targeting of Recombinant Adeno-Associated Virus Type 2 Vectors by Using Avidin-Linked Ligands , 2002, Journal of Virology.

[31]  T. Samulski,et al.  Second-strand synthesis is a rate-limiting step for efficient transduction by recombinant adeno-associated virus vectors , 1996, Journal of virology.

[32]  R. Samulski,et al.  Sustained and complete phenotype correction of hemophilia B mice following intramuscular injection of AAV1 serotype vectors. , 2001, Molecular therapy : the journal of the American Society of Gene Therapy.

[33]  J. Bartlett,et al.  RGD inclusion in VP3 provides adeno-associated virus type 2 (AAV2)-based vectors with a heparan sulfate-independent cell entry mechanism. , 2003, Molecular therapy : the journal of the American Society of Gene Therapy.

[34]  A. Gown,et al.  Persistent and therapeutic concentrations of human factor IX in mice after hepatic gene transfer of recombinant AAV vectors , 1997, Nature Genetics.

[35]  Theresa A. Storm,et al.  Rapid Uncoating of Vector Genomes Is the Key toEfficient Liver Transduction with Pseudotyped Adeno-Associated VirusVectors , 2004, Journal of Virology.

[36]  H. Okayama,et al.  High-efficiency transformation of mammalian cells by plasmid DNA. , 1987, Molecular and cellular biology.

[37]  Philip R. Johnson,et al.  Cell lines for the production of recombinant adeno-associated virus. , 1995, Human gene therapy.

[38]  R. Samulski,et al.  Cross-Packaging of a Single Adeno-Associated Virus (AAV) Type 2 Vector Genome into Multiple AAV Serotypes Enables Transduction with Broad Specificity , 2002, Journal of Virology.

[39]  B. Casto,et al.  Adenovirus-Associated Defective Virus Particles , 1965, Science.

[40]  D. Klessig,et al.  Adenovirus containing a deletion of the early region 2A gene allows growth of adeno-associated virus with decreased efficiency. , 1992, Virology.

[41]  James M. Allen,et al.  Adeno-Associated Virus Type 6 (AAV6) Vectors Mediate Efficient Transduction of Airway Epithelial Cells in Mouse Lungs Compared to That of AAV2 Vectors , 2001, Journal of Virology.

[42]  R. Samulski,et al.  Production of High-Titer Recombinant Adeno-Associated Virus Vectors in the Absence of Helper Adenovirus , 1998, Journal of Virology.

[43]  E. Engleman,et al.  Induction of immunity to antigens expressed by recombinant adeno-associated virus depends on the route of administration. , 1999, Clinical immunology.

[44]  Y. Shi,et al.  Adeno-associated virus P5 promoter contains an adenovirus E1A-inducible element and a binding site for the major late transcription factor , 1989, Journal of virology.

[45]  N. Muzyczka,et al.  The adeno-associated virus type 2 p40 promoter requires a proximal Sp1 interaction and a p19 CArG-like element to facilitate Rep transactivation , 1997, Journal of virology.

[46]  T. Flotte,et al.  A phase I study of an adeno-associated virus-CFTR gene vector in adult CF patients with mild lung disease. , 1996, Human gene therapy.

[47]  D. Housman,et al.  Targeted integration of adeno‐associated virus (AAV) into human chromosome 19. , 1991, The EMBO journal.

[48]  J. Bartlett,et al.  Insertional mutagenesis of the adeno-associated virus type 2 (AAV2) capsid gene and generation of AAV2 vectors targeted to alternative cell-surface receptors. , 2001, Human gene therapy.

[49]  T. Flotte,et al.  Stable in vivo expression of the cystic fibrosis transmembrane conductance regulator with an adeno-associated virus vector. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[50]  T. Flotte,et al.  Repeated Delivery of Adeno-Associated Virus Vectors to the Rabbit Airway , 1999, Journal of Virology.

[51]  S. Wadsworth,et al.  Analysis of recombinant adeno-associated virus packaging and requirements for rep and cap gene products , 1997, Journal of virology.

[52]  Terence R Flotte,et al.  A phase II, double-blind, randomized, placebo-controlled clinical trial of tgAAVCF using maxillary sinus delivery in patients with cystic fibrosis with antrostomies. , 2002, Human gene therapy.

[53]  D. Grimm,et al.  Novel tools for production and purification of recombinant adenoassociated virus vectors. , 1998, Human gene therapy.

[54]  Philip R. Johnson,et al.  Highly purified recombinant adeno-associated virus vectors are biologically active and free of detectable helper and wild-type viruses. , 1999, Human gene therapy.

[55]  M. Hallek,et al.  The VP1 capsid protein of adeno-associated virus type 2 is carrying a phospholipase A2 domain required for virus infectivity. , 2002, The Journal of general virology.

[56]  J. Schlehofer,et al.  Update on the prevalence of serum antibodies (IgG and IgM) to adeno‐associated virus (AAV) , 1999, Journal of medical virology.

[57]  Juan Li,et al.  Gene Transfer by Adeno-Associated Virus Vectors into the Central Nervous System , 1997, Experimental Neurology.

[58]  M. Weitzman,et al.  Incorporation of tumor-targeting peptides into recombinant adeno-associated virus capsids. , 2001, Molecular therapy : the journal of the American Society of Gene Therapy.

[59]  N. Jones,et al.  Effect of deletions in adenovirus early region 1 genes upon replication of adeno-associated virus , 1982, Journal of virology.

[60]  Lili Wang,et al.  Novel adeno-associated viruses from rhesus monkeys as vectors for human gene therapy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[61]  R. Samulski,et al.  Several log increase in therapeutic transgene delivery by distinct adeno-associated viral serotype vectors. , 2000, Molecular therapy : the journal of the American Society of Gene Therapy.

[62]  Theresa A. Storm,et al.  Comparison of adenoviral and adeno-associated viral vectors for pancreatic gene delivery in vivo. , 2004, Human gene therapy.

[63]  D. Russell,et al.  Packaging Cells Based on Inducible Gene Amplification for the Production of Adeno-Associated Virus Vectors , 1998, Journal of Virology.

[64]  R. Kotin,et al.  Organization of adeno-associated virus DNA in latently infected Detroit 6 cells. , 1989, Virology.

[65]  R. Levinsky,et al.  High-titer recombinant adeno-associated virus production from replicating amplicons and herpes vectors deleted for glycoprotein H. , 1999, Human gene therapy.

[66]  J. Trempe,et al.  A helper virus-free packaging system for recombinant adeno-associated virus vectors. , 1999, Gene.

[67]  B. Carter,et al.  Mutagenesis of an AUG codon in the adeno-associated virus rep gene: effects on viral DNA replication. , 1989, Virology.

[68]  R. Linhardt,et al.  Order out of complexity--protein structures that interact with heparin. , 2001, Current opinion in structural biology.

[69]  R. Kotin,et al.  Insect cells as a factory to produce adeno-associated virus type 2 vectors. , 2002, Human gene therapy.

[70]  James M. Allen,et al.  Repeat Transduction in the Mouse Lung by Using Adeno-Associated Virus Vectors with Different Serotypes , 2000, Journal of Virology.

[71]  A. Auricchio Pseudotyped AAV vectors for constitutive and regulated gene expression in the eye , 2003, Vision Research.

[72]  M. Weitzman,et al.  Differential myocardial gene delivery by recombinant serotype-specific adeno-associated viral vectors. , 2004, Molecular therapy : the journal of the American Society of Gene Therapy.

[73]  Juan Li,et al.  A Novel Gene Expression Control System and Its Use in Stable, High-Titer 293 Cell-Based Adeno-Associated Virus Packaging Cell Lines , 2002, Journal of Virology.

[74]  C. Laughlin,et al.  Latent infection of KB cells with adeno-associated virus type 2 , 1986, Journal of virology.

[75]  W. Hauswirth,et al.  Integration of the adeno-associated virus genome into cellular DNA in latently infected human Detroit 6 cells , 1980, Journal of virology.

[76]  J. Weiler,et al.  Glycosaminoglycan‐protein interactions: definition of consensus sites in glycosaminoglycan binding proteins , 1998, BioEssays : news and reviews in molecular, cellular and developmental biology.

[77]  D. Grimm,et al.  DNA helicase‐mediated packaging of adeno‐associated virus type 2 genomes into preformed capsids , 2001, The EMBO journal.

[78]  J. Chiorini,et al.  Scalable purification of adeno-associated virus type 2, 4, or 5 using ion-exchange chromatography. , 2002, Human gene therapy.

[79]  Alan McClelland,et al.  AAV-mediated factor IX gene transfer to skeletal muscle in patients with severe hemophilia B. , 2003, Blood.

[80]  K. Berns,et al.  Nucleotide sequence of the inverted terminal repetition in adeno-associated virus DNA , 1980, Journal of virology.

[81]  A. Salvetti,et al.  Factors influencing recombinant adeno-associated virus production. , 1998, Human gene therapy.

[82]  T. Conlon,et al.  Mutational Analysis of the Adeno-Associated Virus Type 2 (AAV2) Capsid Gene and Construction of AAV2 Vectors with Altered Tropism , 2000, Journal of Virology.

[83]  Arun Srivastava,et al.  Transgene Expression Transfer : Role of Cellular FKBP 52 Protein in Adeno-Associated Virus Type 2-Mediated Gene , 2001 .

[84]  Lili Wang,et al.  Hybrid Vectors Based on Adeno-Associated Virus Serotypes 2 and 5 for Muscle-Directed Gene Transfer , 2001, Journal of Virology.

[85]  R. Samulski,et al.  Insertional mutagenesis of AAV2 capsid and the production of recombinant virus. , 1999, Virology.

[86]  K. Ozawa,et al.  The Use of Heterologous Promoters for Adeno‐Associated Virus (AAV) Protein Expression in AAV Vector Production , 1998, Microbiology and immunology.

[87]  D. Duan,et al.  Endosomal processing limits gene transfer to polarized airway epithelia by adeno-associated virus. , 2000, The Journal of clinical investigation.

[88]  T. Shenk,et al.  The adenovirus DNA-binding protein stimulates the rate of transcription directed by adenovirus and adeno-associated virus promoters , 1990, Journal of virology.

[89]  A. Srivastava,et al.  Nucleotide sequence and organization of the adeno-associated virus 2 genome , 1983, Journal of virology.

[90]  James M. Wilson,et al.  High-titer adeno-associated viral vectors from a Rep/Cap cell line and hybrid shuttle virus. , 1998, Human gene therapy.

[91]  Fred H. Gage,et al.  Adeno-associated virus effectively mediates conditional gene modification in the brain , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[92]  R. Heilbronn,et al.  A subset of herpes simplex virus replication genes provides helper functions for productive adeno-associated virus replication , 1991, Journal of virology.

[93]  T. Flotte,et al.  Safety and Biological Efficacy of an Adeno‐Associated Virus Vector–Cystic Fibrosis Transmembrane Regulator (AAV‐CFTR) in the Cystic Fibrosis Maxillary Sinus , 1999, The Laryngoscope.

[94]  James M. Wilson,et al.  Gene Therapy Vectors Based on Adeno-Associated Virus Type 1 , 1999, Journal of Virology.

[95]  N. Muzyczka,et al.  The adeno-associated virus (AAV) Rep protein acts as both a repressor and an activator to regulate AAV transcription during a productive infection , 1997, Journal of virology.

[96]  R. Samulski,et al.  Role for highly regulated rep gene expression in adeno-associated virus vector production , 1997, Journal of virology.

[97]  M. R. Delgado Alvira,et al.  Clades of Adeno-Associated Viruses Are Widely Disseminated in Human Tissues , 2004, Journal of Virology.

[98]  K. Clark,et al.  Recent advances in recombinant adeno-associated virus vector production. , 2002, Kidney international.

[99]  T. Flotte,et al.  Efficient and persistent gene transfer of AAV-CFTR in maxillary sinus , 1998, The Lancet.

[100]  J. Wilson,et al.  Purification of recombinant adeno-associated virus vectors by column chromatography and its performance in vivo. , 2000, Human gene therapy.

[101]  Jean Bennett,et al.  Gene therapy restores vision in a canine model of childhood blindness , 2001, Nature Genetics.

[102]  M. Hallek,et al.  Efficient and selective AAV2-mediated gene transfer directed to human vascular endothelial cells. , 2001, Molecular therapy : the journal of the American Society of Gene Therapy.

[103]  R. Samulski,et al.  Targeted adeno-associated virus vector transduction of nonpermissive cells mediated by a bispecific F(ab'γ)2 antibody , 1999, Nature Biotechnology.

[104]  James M. Wilson,et al.  Recombinant adeno-associated virus for muscle directed gene therapy , 1997, Nature Medicine.

[105]  R. Herzog,et al.  Improved Hepatic Gene Transfer by Using an Adeno-Associated Virus Serotype 5 Vector , 2002, Journal of Virology.

[106]  D. Grimm,et al.  Subcellular compartmentalization of adeno-associated virus type 2 assembly , 1997, Journal of virology.

[107]  Samulski,et al.  Helper-free stocks of recombinant adeno-associated viruses: normal integration does not require viral gene expression , 1989, Journal of virology.

[108]  R. Kotin,et al.  Adeno-Associated Virus Type 5 (AAV5) but Not AAV2 Binds to the Apical Surfaces of Airway Epithelia and Facilitates Gene Transfer , 2000, Journal of Virology.

[109]  M. Hallek,et al.  Targeted Gene Delivery to Vascular Tissue In Vivo by Tropism-Modified Adeno-Associated Virus Vectors , 2004, Circulation.

[110]  R. Samulski,et al.  Membrane-Associated Heparan Sulfate Proteoglycan Is a Receptor for Adeno-Associated Virus Type 2 Virions , 1998, Journal of Virology.