RNA Modification Level Estimation with pulseR
暂无分享,去创建一个
[1] Yu-Sheng Chen,et al. Dynamic transcriptomic m6A decoration: writers, erasers, readers and functions in RNA metabolism , 2018, Cell Research.
[2] Chuan He,et al. Post-transcriptional gene regulation by mRNA modifications , 2016, Nature Reviews Molecular Cell Biology.
[3] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[4] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[5] Schraga Schwartz,et al. The m1A landscape on cytosolic and mitochondrial mRNA at single-base resolution , 2017, Nature.
[6] Christoph Dieterich,et al. pulseR: Versatile computational analysis of RNA turnover from metabolic labeling experiments , 2017, Bioinform..
[7] Bing Ren,et al. N6-methyladenosine-dependent regulation of messenger RNA stability , 2013 .
[8] Chengqi Yi,et al. Transcriptome-wide mapping reveals reversible and dynamic N(1)-methyladenosine methylome. , 2016, Nature chemical biology.
[9] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[10] Knut Reinert,et al. Flexbar 3.0 ‐ SIMD and multicore parallelization , 2017, Bioinform..
[11] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[12] Yuri Motorin,et al. Detecting RNA modifications in the epitranscriptome: predict and validate , 2017, Nature Reviews Genetics.
[13] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[14] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..