Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
暂无分享,去创建一个
Xuan Li | Yi Wang | Pei Hao | Da Luo | Qiong-Yi Zhao | Yi-Meng Kong | Yi Wang | D. Luo | Qiongyi Zhao | Pei Hao | Yimeng Kong | Xuan Li
[1] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[2] Cathy H. Wu,et al. The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..
[3] Chuan-Xi Zhang,et al. De novo characterization of a whitefly transcriptome and analysis of its gene expression during development , 2010, BMC Genomics.
[4] S. Horvath,et al. Transcriptomic Analysis of Autistic Brain Reveals Convergent Molecular Pathology , 2011, Nature.
[5] Satoshi Yamaguchi,et al. Estimation of the Genome Size of Tea (Camellia sinensis), Camellia (C.japonica), and their Interspecific Hybrids by Flow Cytometry , 2006 .
[6] Akhilesh K. Tyagi,et al. De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.
[7] Robert Turgeon,et al. The developmental dynamics of the maize leaf transcriptome , 2010, Nature Genetics.
[8] Wei Li,et al. Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing , 2011, Proceedings of the National Academy of Sciences.
[9] Siu-Ming Yiu,et al. SOAP2: an improved ultrafast tool for short read alignment , 2009, Bioinform..
[10] J. Montoya-Burgos,et al. Optimization of de novo transcriptome assembly from next-generation sequencing data. , 2010, Genome research.
[11] Lee T. Sam,et al. Transcriptome Sequencing to Detect Gene Fusions in Cancer , 2009, Nature.
[12] Inanç Birol,et al. De novo transcriptome assembly with ABySS , 2009, Bioinform..
[13] Manolis Kellis,et al. Comparative Functional Genomics of the Fission Yeasts , 2011, Science.
[14] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[15] N. Friedman,et al. Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2011, Nature Biotechnology.
[16] Chengying Shi,et al. Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds , 2011, BMC Genomics.
[17] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[18] S. Barrett,et al. De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants , 2011, BMC Genomics.
[19] B. Graveley. The developmental transcriptome of Drosophila melanogaster , 2010, Nature.
[20] Steven J. M. Jones,et al. De novo assembly and analysis of RNA-seq data , 2010, Nature Methods.
[21] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[22] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.