Genome-wide association study on differentiated thyroid cancer.

CONTEXT Genome-wide association studies (GWASs) of differentiated thyroid cancer (DTC) have identified associations with polymorphisms at 2q35 (DIRC3), 8p12 (NRG1), 9q22.33 (FOXE1), and 14q13.2 (NKX2-1). However, most of the inherited genetic risk factors of DTC remain to be discovered. OBJECTIVE Our objective was to identify additional common DTC susceptibility loci. DESIGN We conducted a GWAS in a high-incidence Italian population of 690 cases and 497 controls and followed up the most significant polymorphisms in 2 additional Italian series and in 3 low-incidence populations totaling 2958 cases and 3727 controls. RESULTS After excluding the most robust previously identified locus (9q22.33), the strongest association was shown by rs6759952, confirming the recently published association in DIRC3 (odds ratio [OR] = 1.21, P = 6.4 × 10(-10), GWAS and all replications combined). Additionally, in the combined analysis of the Italian series, suggestive associations were attained with rs10238549 and rs7800391 in IMMP2L (OR = 1.27, P = 4.1 × 10(-6); and OR = 1.25, P = 5.7 × 10(-6)), rs7617304 in RARRES1 (OR = 1.25, P = 4.6 × 10(-5)) and rs10781500 in SNAPC4/CARD9 (OR = 1.23, P = 3.5 × 10(-5)). CONCLUSIONS Our findings provide additional insights into the genetic and biological basis of inherited genetic susceptibility to DTC. Additional studies are needed to determine the role of the identified polymorphisms in the development of DTC and their possible use in the clinical practice.

[1]  E. Bonora,et al.  Genetic Predisposition to Familial Nonmedullary Thyroid Cancer: An Update of Molecular Findings and State-of-the-Art Studies , 2010, Journal of oncology.

[2]  Chun Jing,et al.  Tazarotene-induced gene 1 (TIG1) expression in prostate carcinomas and its relationship to tumorigenicity. , 2002, Journal of the National Cancer Institute.

[3]  D E Goldgar,et al.  Localization of a susceptibility gene for familial nonmedullary thyroid carcinoma to chromosome 2q21. , 2001, American journal of human genetics.

[4]  Amit R. Indap,et al.  Genes mirror geography within Europe , 2008, Nature.

[5]  K. Hemminki,et al.  Familial risks for cancer as the basis for evidence-based clinical referral and counseling. , 2008, The oncologist.

[6]  S. Scherer,et al.  Disruption of a novel gene (IMMP2L) by a breakpoint in 7q31 associated with Tourette syndrome. , 2001, American journal of human genetics.

[7]  F. Canzian,et al.  A gene predisposing to familial thyroid tumors with cell oxyphilia maps to chromosome 19p13.2. , 1998, American journal of human genetics.

[8]  Xianglin L. Du,et al.  Impact of enhanced detection on the increase in thyroid cancer incidence in the United States: review of incidence trends by socioeconomic status within the surveillance, epidemiology, and end results registry, 1980-2008. , 2013, Thyroid : official journal of the American Thyroid Association.

[9]  Markus Scholz,et al.  Genetic Variation and Recent Positive Selection in Worldwide Human Populations: Evidence from Nearly 1 Million SNPs , 2009, PloS one.

[10]  Kari Stefansson,et al.  Common variants on 9q22.33 and 14q13.3 predispose to thyroid cancer in European populations , 2009, Nature Genetics.

[11]  Herb Chen,et al.  Is Hashimoto's thyroiditis a risk factor for papillary thyroid cancer? , 2008, The Journal of surgical research.

[12]  E. Papaemmanuil,et al.  National study of colorectal cancer genetics , 2007, British Journal of Cancer.

[13]  R. DeLellis Pathology and genetics of thyroid carcinoma , 2006, Journal of surgical oncology.

[14]  J. Kere,et al.  A susceptibility locus for papillary thyroid carcinoma on chromosome 8q24. , 2009, Cancer research.

[15]  K. Hemminki,et al.  Familial risks for nonmedullary thyroid cancer. , 2005, The Journal of clinical endocrinology and metabolism.

[16]  Elisabeth Cardis,et al.  Risk of thyroid cancer after exposure to 131I in childhood. , 2005, Journal of the National Cancer Institute.

[17]  P. Visscher,et al.  Geographical structure and differential natural selection among North European populations. , 2009, Genome research.

[18]  A. Arnold,et al.  Papillary thyroid carcinoma associated with papillary renal neoplasia: genetic linkage analysis of a distinct heritable tumor syndrome. , 2000, The Journal of clinical endocrinology and metabolism.

[19]  Kari Stefansson,et al.  Discovery of common variants associated with low TSH levels and thyroid cancer risk , 2012, Nature Genetics.

[20]  M. Schepens,et al.  Disruption of a novel gene, DIRC3, and expression of DIRC3‐HSPBAP1 fusion transcripts in a case of familial renal cell cancer and t(2;3)(q35;q21) , 2003, Genes, chromosomes & cancer.

[21]  K. Goda,et al.  Overexpression of caspase recruitment domain (CARD) membrane‐associated guanylate kinase 1 (CARMA1) and CARD9 in primary gastric B‐cell lymphoma , 2005, Cancer.

[22]  S. Heath,et al.  The FOXE1 locus is a major genetic determinant for radiation-related thyroid carcinoma in Chernobyl. , 2010, Human molecular genetics.

[23]  Tomi D. Berney,et al.  High-density SNP association study and copy number variation analysis of the AUTS1 and AUTS5 loci implicate the IMMP2L–DOCK4 gene region in autism susceptibility , 2009, Molecular Psychiatry.

[24]  V. Nosé Familial Non-Medullary Thyroid Carcinoma: An Update , 2008, Endocrine pathology.

[25]  G. Pfeifer,et al.  Methylation of the retinoid response gene TIG1 in prostate cancer correlates with methylation of the retinoic acid receptor beta gene , 2004, Oncogene.

[26]  R. Elisei,et al.  New and old knowledge on differentiated thyroid cancer epidemiology and risk factors. , 2012, Journal of endocrinological investigation.

[27]  Laurence Leenhardt,et al.  Increased incidence of thyroid carcinoma in france: a true epidemic or thyroid nodule management effects? Report from the French Thyroid Cancer Committee. , 2004, Thyroid : official journal of the American Thyroid Association.

[28]  J. Bertin,et al.  CARD9 Is a Novel Caspase Recruitment Domain-containing Protein That Interacts With BCL10/CLAP and Activates NF-κB* , 2000, The Journal of Biological Chemistry.

[29]  S. Nagpal,et al.  Tazarotene-induced gene 1 (TIG1), a novel retinoic acid receptor-responsive gene in skin. , 1996, The Journal of investigative dermatology.