De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi.
暂无分享,去创建一个
[1] Yuying Zhang,et al. De Novo Assembly, Characterization and Comparative Transcriptome Analysis of the Mature Gonads in Spinibarbus hollandi , 2022, Animals : an open access journal from MDPI.
[2] N. Gemmell,et al. Effects of cortisol on female-to-male sex change in a wrasse , 2022, PloS one.
[3] Shaojun Liu,et al. Characterization of sex locus and sex-specific sequences in the mandarin fishes , 2022, Aquaculture.
[4] Yong Zhang,et al. Development and gene expression analysis of gonad during 17α-methyltestosterone-induced sex reversal in mandarin fish (Siniperca chuatsi) , 2022, Aquaculture Reports.
[5] Ming-hui Li,et al. Homozygous Mutation of gsdf Causes Infertility in Female Nile Tilapia (Oreochromis niloticus) , 2022, Frontiers in Endocrinology.
[6] M. Pavlidis,et al. Knockout of the hsd11b2 Gene Extends the Cortisol Stress Response in Both Zebrafish Larvae and Adults , 2021, International Journal of Molecular Sciences.
[7] Lingyun Song,et al. The role of StAR2 gene in testicular differentiation and spermatogenesis in Nile tilapia (Oreochromis niloticus) , 2021, The Journal of Steroid Biochemistry and Molecular Biology.
[8] M. Schartl,et al. Evolution of master sex determiners: TGF-β signalling pathways at regulatory crossroads , 2021, Philosophical Transactions of the Royal Society B.
[9] Xuewei Yang,et al. Comparison of Gonadal Transcriptomes Uncovers Reproduction-Related Genes with Sexually Dimorphic Expression Patterns in Diodon hystrix , 2021, Animals : an open access journal from MDPI.
[10] Haiyang Yu,et al. Growth differentiation factor 9 (gdf9) and bone morphogenetic protein 15 (bmp15) are potential intraovarian regulators of steroidogenesis in Japanese flounder (Paralichthys olivaceus). , 2020, General and comparative endocrinology.
[11] Deshou Wang,et al. Amh regulate female folliculogenesis and fertility in a dose-dependent manner through Amhr2 in Nile tilapia , 2020, Molecular and Cellular Endocrinology.
[12] T. Kocher,et al. Homozygous mutation of foxh1 arrests oogenesis causing infertility in female Nile tilapia† , 2019, Biology of Reproduction.
[13] C. Shao,et al. Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis , 2019, Front. Genet..
[14] Hong‐Juan Shi,et al. Comparative transcriptome analysis of male and female gonads reveals sex-biased genes in spotted scat (Scatophagus argus) , 2019, Fish Physiology and Biochemistry.
[15] Y. Huang,et al. Transcriptome Analysis of Male and Female Mature Gonads of Silver Sillago (Sillago sihama) , 2019, Genes.
[16] Chenxi Xu,et al. Zebrafish prmt5 arginine methyltransferase is essential for germ cell development , 2019, Development.
[17] W. Tao,et al. Identification and Evolution of TGF-β Signaling Pathway Members in Twenty-Four Animal Species and Expression in Tilapia , 2018, International journal of molecular sciences.
[18] Jia Gu,et al. fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.
[19] Xiumei Liu,et al. Comparative transcriptome analysis of ovary and testis reveals potential sex-related genes and pathways in spotted knifejaw Oplegnathus punctatus. , 2017, Gene.
[20] Chenhong Li,et al. Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. , 2017, Molecular phylogenetics and evolution.
[21] Xiaoxu Zhou,et al. Comparative RNA-Seq analysis of differentially expressed genes in the testis and ovary of Takifugu rubripes. , 2017, Comparative biochemistry and physiology. Part D, Genomics & proteomics.
[22] Fenghua Wang,et al. nr0b1 (DAX1) mutation in zebrafish causes female-to-male sex reversal through abnormal gonadal proliferation and differentiation , 2016, Molecular and Cellular Endocrinology.
[23] B. Draper,et al. Bmp15 Is an Oocyte-Produced Signal Required for Maintenance of the Adult Female Sexual Phenotype in Zebrafish , 2016, PLoS genetics.
[24] Zhigang Jiang,et al. Red List of China’s Vertebrates , 2016 .
[25] M. H. Angelis,et al. Steroids in teleost fishes: A functional point of view , 2015, Steroids.
[26] Evgeny M. Zdobnov,et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs , 2015, Bioinform..
[27] G. Hua,et al. RNAi-mediated knockdown of INHBB increases apoptosis and inhibits steroidogenesis in mouse granulosa cells , 2015, The Journal of reproduction and development.
[28] D. Jerry,et al. Sex Control in Fish: Approaches, Challenges and Opportunities for Aquaculture , 2015 .
[29] Steven L Salzberg,et al. HISAT: a fast spliced aligner with low memory requirements , 2015, Nature Methods.
[30] S. Salzberg,et al. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads , 2015, Nature Biotechnology.
[31] H. Yue,et al. Molecular characterization of the cDNAs of two zona pellucida genes in the Chinese sturgeon, Acipenser sinensis Gray, 1835 , 2014 .
[32] Jian-guo Lu,et al. Gonadal transcriptomic analysis of yellow catfish (Pelteobagrus fulvidraco): identification of sex-related genes and genetic markers. , 2014, Physiological genomics.
[33] Jinwei Hu,et al. Gonadal Transcriptome Analysis of Male and Female Olive Flounder (Paralichthys olivaceus) , 2014, BioMed research international.
[34] W. Salzburger,et al. Genetics of Sexual Development: An Evolutionary Playground for Fish , 2014, Genetics.
[35] Xu-fang Liang,et al. Phylogeography of Coreoperca whiteheadi (Perciformes: Coreoperca) in China based on mitochondrial and nuclear gene sequences , 2013 .
[36] Zhanjiang Liu,et al. Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome , 2013, PloS one.
[37] Colin N. Dewey,et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis , 2013, Nature Protocols.
[38] Linyan Zhou,et al. Characterization of Gonadal Transcriptomes from Nile Tilapia (Oreochromis niloticus) Reveals Differentially Expressed Genes , 2013, PloS one.
[39] Davis J. McCarthy,et al. Count-based differential expression analysis of RNA sequencing data using R and Bioconductor , 2013, Nature Protocols.
[40] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[41] Tohru Kobayashi,et al. Expression of 3β-hydroxysteroid dehydrogenase (hsd3b), star and ad4bp/sf-1 during gonadal development in medaka (Oryzias latipes). , 2012, General and comparative endocrinology.
[42] Á. García-López,et al. Bone morphogenetic protein 15 and growth differentiation factor 9 expression in the ovary of European sea bass (Dicentrarchus labrax): cellular localization, developmental profiles, and response to unilateral ovariectomy. , 2011, General and comparative endocrinology.
[43] R. Nóbrega,et al. Proteolytically activated, recombinant anti-mullerian hormone inhibits androgen secretion, proliferation, and differentiation of spermatogonia in adult zebrafish testis organ cultures. , 2011, Endocrinology.
[44] N. Friedman,et al. Trinity : reconstructing a full-length transcriptome without a genome from RNA-Seq data , 2016 .
[45] T. Usami,et al. Expression of gonadal soma derived factor (GSDF) is spatially and temporally correlated with early testicular differentiation in medaka. , 2010, Gene expression patterns : GEP.
[46] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[47] R. Drew,et al. Mapping of five candidate sex-determining loci in rainbow trout (Oncorhynchus mykiss) , 2009, BMC Genetics.
[48] J. Graves. Weird Animal Genomes and the Evolution of Vertebrate Sex and Sex Chromosomes , 2008 .
[49] D. Baron,et al. Rainbow trout gonadal masculinization induced by inhibition of estrogen synthesis is more physiological than masculinization induced by androgen supplementation. , 2008, Biology of reproduction.
[50] Hayato Yokoi,et al. Mullerian inhibiting substance is required for germ cell proliferation during early gonadal differentiation in medaka (Oryzias latipes). , 2008, Endocrinology.
[51] Tohru Kobayashi,et al. Sexual Dimorphic Expression of Genes in Gonads During Early Differentiation of a Teleost Fish, the Nile Tilapia Oreochromis niloticus1 , 2008, Biology of reproduction.
[52] D. Power,et al. Developmental expression of DAX1 in the European sea bass, Dicentrarchus labrax: lack of evidence for sexual dimorphism during sex differentiation , 2007, Reproductive biology and endocrinology : RB&E.
[53] Xianguang Guo,et al. Non-monophyly of fish in the Sinipercidae (Perciformes) as inferred from cytochrome b gene , 2007, Hydrobiologia.
[54] Wei-wei Wang,et al. Structure of the mitochondrial DNA control region of the sinipercine fishes and their phylogenetic relationship. , 2006, Yi chuan xue bao = Acta genetica Sinica.
[55] Ariel J. Levine,et al. GDF3 at the Crossroads of TGF-beta Signaling , 2006, Cell cycle.
[56] Ariel J. Levine,et al. GDF3, a BMP inhibitor, regulates cell fate in stem cells and early embryos , 2005, Development.
[57] J. Dupont,et al. Bone Morphogenetic Protein 5 Expression in the Rat Ovary: Biological Effects on Granulosa Cell Proliferation and Steroidogenesis1 , 2005, Biology of reproduction.
[58] P. Swanson,et al. Biochemistry and physiology of fish gonadotropins , 2003, Fish Physiology and Biochemistry.
[59] Tohru Kobayashi,et al. Molecular cloning of DAX1 and SHP cDNAs and their expression patterns in the Nile tilapia, Oreochromis niloticus. , 2002, Biochemical and biophysical research communications.
[60] Hayato Yokoi,et al. sox9 in a teleost fish, medaka (Oryzias latipes): Evidence for diversified function of Sox9 in gonad differentiation , 2002, Molecular reproduction and development.
[61] C. Miura,et al. Spermatogenesis-preventing substance in Japanese eel. , 2002, Development.
[62] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[63] J. Rossant,et al. FoxH1 (Fast) functions to specify the anterior primitive streak in the mouse. , 2001, Genes & development.
[64] Y. Yan,et al. Two sox9 genes on duplicated zebrafish chromosomes: expression of similar transcription activators in distinct sites. , 2001, Developmental biology.
[65] M. Gates,et al. fast1 is required for the development of dorsal axial structures in zebrafish , 2000, Current Biology.
[66] D. Stocco,et al. Down-regulation of steroidogenic acute regulatory (StAR) protein in rat Leydig cells: implications for regulation of testosterone production during aging , 1999, Mechanisms of Ageing and Development.
[67] E. Lalli,et al. DAX-1 Blocks Steroid Production at Multiple Levels* * This study was supported by NIH Grant HD-17481 (to D.M.S.) and from CNRS, INSERM, Centre Hospitalier Universitaire Régional, FRM, Rhône-Poulenc Rorer (Bioavenir), Hôpital Universitaire de Strasbourg, and ARC (to P.S.-C.). , 1998, Endocrinology.
[68] C. Kimmel,et al. Zebrafish paraxial protocadherin is a downstream target of spadetail involved in morphogenesis of gastrula mesoderm. , 1998, Development.
[69] P. Hoodless,et al. Smad2 and Smad3 positively and negatively regulate TGF beta-dependent transcription through the forkhead DNA-binding protein FAST2. , 1998, Molecular cell.
[70] E. Chambaz,et al. Transforming Growth Factor β1 Decreases Cholesterol Supply to Mitochondria via Repression of Steroidogenic Acute Regulatory Protein Expression* , 1998, The Journal of Biological Chemistry.
[71] S. Yamashita,et al. Rainbow trout SOX9: cDNA cloning, gene structure and expression. , 1997, Gene.
[72] E. Lalli,et al. DNA binding and transcriptional repression by DAX-1 blocks steroidogenesis , 1997, Nature.
[73] M. Satoh,et al. Effect of Micropylar Morphology and Size on Rapid Sperm Entry into the Eggs of the Medaka , 1997 .
[74] Yang QingCAI De-lin Zhou Cai-wu. On the Classification and Distribution of the Sinipercinae Fishes (Family serranidae) , 1988 .
[75] G. Ihler,et al. Locations of ribosome-binding sites in the nin5 region of bacteriophage λ , 1980 .
[76] D. Stocco. StAR protein and the regulation of steroid hormone biosynthesis. , 2001, Annual review of physiology.
[77] P. Wassarman,et al. Early events in mammalian fertilization. , 1987, Annual review of cell biology.