Teaching Tree-Thinking to Undergraduate Biology Students

Evolution is the unifying principle of all biology, and understanding how evolutionary relationships are represented is critical for a complete understanding of evolution. Phylogenetic trees are the most conventional tool for displaying evolutionary relationships, and “tree-thinking” has been coined as a term to describe the ability to conceptualize evolutionary relationships. Students often lack tree-thinking skills, and developing those skills should be a priority of biology curricula. Many common student misconceptions have been described, and a successful instructor needs a suite of tools for correcting those misconceptions. I review the literature on teaching tree-thinking to undergraduate students and suggest how this material can be presented within an inquiry-based framework.

[1]  Fouad Abd-El-Khalick,et al.  Improving science teachers' conceptions of nature of science: a critical review of the literature , 2000 .

[2]  David W. Goldsmith,et al.  The Great Clade Race , 2009 .

[3]  L. R. Novick,et al.  Characters Are Key: The Effect of Synapomorphies on Cladogram Comprehension , 2010, Evolution: Education and Outreach.

[4]  R. Gadagkar Nothing in Biology Makes Sense Except in the Light of Evolution , 2005 .

[5]  Simon A. A. Travers,et al.  Does a tree–like phylogeny only exist at the tips in the prokaryotes? , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[6]  Eric Bapteste,et al.  INAUGURAL ARTICLE by a Recently Elected Academy Member:Pattern pluralism and the Tree of Life hypothesis , 2007 .

[7]  David F. Treagust,et al.  Conceptual change: a discussion of theoretical, methodological and practical challenges for science education , 2008 .

[8]  Does the Segregation of Evolution in Biology Textbooks and Introductory Courses Reinforce Students’ Faulty Mental Models of Biology and Evolution? , 2009, Evolution: Education and Outreach.

[9]  E. Koonin,et al.  Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world , 2008, Nucleic acids research.

[10]  Judy Perry,et al.  Evaluating two approaches to helping college students understand evolutionary trees through diagramming tasks. , 2008, CBE life sciences education.

[11]  F. Krell,et al.  Which side of the tree is more basal? , 2004 .

[12]  H. Ochman,et al.  Molecular archaeology of the Escherichia coli genome. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[13]  Sydney Anne Cameron,et al.  Molecular Evolution: A Phylogenetic Approach.—Roderic D. M. Page and Edward C. Holmes. , 2002 .

[14]  N. Eldredge,et al.  Phylogenetics and Material Cultural Evolution , 2007, Current Anthropology.

[15]  Kefyn M. Catley,et al.  Darwin's missing link—a novel paradigm for evolution education , 2006 .

[16]  Bin Ma,et al.  From Gene Trees to Species Trees , 2000, SIAM J. Comput..

[17]  O. Kandler,et al.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[18]  T. Ryan Gregory,et al.  Understanding Evolutionary Trees , 2008, Evolution: Education and Outreach.

[19]  J. Lake,et al.  The ring of life provides evidence for a genome fusion origin of eukaryotes , 2004, Nature.

[20]  A. Giese Using Inquiry & Phylogeny To Teach Comparative Morphology , 2005 .

[21]  H. Schoenfuss,et al.  Phylogenetic Reconstruction as a Broadly Applicable Teaching Tool in the Biology Classroom: The Value of Data in Estimating Likely Answers. , 2006 .

[22]  Seeing the Forest Through the Trees: Helping Students Appreciate Life's Diversity by Building the Tree of Life , 2006 .

[23]  L. R. Novick,et al.  Understanding phylogenies in biology: the influence of a Gestalt Perceptual Principle. , 2007, Journal of experimental psychology. Applied.

[24]  Hanno Sandvik,et al.  Tree thinking cannot taken for granted: challenges for teaching phylogenetics , 2008, Theory in Biosciences.

[25]  M. Crisp,et al.  Tree thinking for all biology: the problem with reading phylogenies as ladders of progress. , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.

[26]  David A. Baum,et al.  Phylogenics & Tree-Thinking , 2008 .

[27]  Sam S Donovan,et al.  The Tree-Thinking Challenge , 2005, Science.

[28]  Cameron A. J. Ellis,et al.  Conceptions of Evolution Among Science Graduate Students , 2009 .

[29]  L. Orgel,et al.  Phylogenetic Classification and the Universal Tree , 1999 .

[30]  David W. Goldsmith,et al.  The Great Clade Race: Presenting Cladistic Thinking to Biology Majors & General Science Students , 2003 .

[31]  John E. Penick,et al.  The influence of classroom climate on science process and content achievement of community college students , 1983 .

[32]  Kendra Spence Cheruvelil,et al.  Using Inquiry and Tree-Thinking to “March Through the Animal Phyla”: Teaching Introductory Comparative Biology in an Evolutionary Context , 2009, Evolution: Education and Outreach.

[33]  Sean Nee,et al.  The great chain of being , 2005, Nature.

[34]  Judy Perry,et al.  College Students' Misconceptions About Evolutionary Trees , 2007 .

[35]  Anton E. Lawson A Better Way to Teach Biology. , 1988 .

[36]  Doolittle Wf Phylogenetic Classification and the Universal Tree , 1999 .

[37]  Murray S. Jensen,et al.  Changes in Students' Understanding of Evolution Resulting from Different Curricular and Instructional Strategies. , 1996 .

[38]  W. Maddison Gene Trees in Species Trees , 1997 .

[39]  Kristy Halverson Using Pipe Cleaners to Bring the Tree of Life to Life , 2010 .

[40]  Anton E. Lawson,et al.  Effects of Learning Cycle and Traditional Text on Comprehension of Science Concepts by Students at Differing Reasoning Levels. , 1999 .

[41]  Richard Lehrer,et al.  Tracing a Prospective Learning Progression for Developing Understanding of Evolution , 2005 .

[42]  Randy L. Bell,et al.  The nature of science and instructional practice: Making the unnatural natural , 1998 .

[43]  T. Ryan Gregory,et al.  Understanding Natural Selection: Essential Concepts and Common Misconceptions , 2009, Evolution: Education and Outreach.

[44]  M. Crisp,et al.  Do early branching lineages signify ancestral traits? , 2005, Trends in ecology & evolution.

[45]  S. Donovan,et al.  Evolution. The tree-thinking challenge. , 2005, Science.

[46]  S. Offner A Universal Phylogenetic Tree , 2001 .

[47]  Joel B. Hagen,et al.  The Comparative Method, Hypothesis Testing & Phylogenetic Analysis – An Introductory Laboratory , 2001 .

[48]  C. Wieman,et al.  Why peer discussion improves student performance on in-class concept questions , 2009 .

[49]  Hervé Philippe,et al.  Horizontal gene transfer and phylogenetics. , 2003, Current opinion in microbiology.

[50]  Norman G. Lederman EJSE Editorial: The State of Science Education: Subject Matter Without Context , 1998 .

[51]  M. Kelly The Great Chain of Being: A Study of the History of an Idea , 1937, Philosophy.

[52]  M. O. Dayhoff,et al.  Origins of prokaryotes, eukaryotes, mitochondria, and chloroplasts. , 1978, Science.

[53]  M. Nei,et al.  Molecular Evolution and Phylogenetics , 2000 .

[54]  John L. Rudolph,et al.  Evolution and the nature of science: On the historical discord and its implications for education , 1998 .

[55]  H. Sandvik Anthropocentricisms in cladograms , 2007, Biology & philosophy.

[56]  Craig E. Nelson,et al.  BEWARE OF Nuts & Bolts: Putting Evolution into the Teaching of Biological Classification , 2005 .

[57]  L. R. Novick,et al.  Seeing the Wood for the Trees: An Analysis of Evolutionary Diagrams in Biology Textbooks , 2008 .

[58]  Courtney K. Shade,et al.  Interpreting evolutionary diagrams: When topology and process conflict , 2010 .

[59]  Eric Mazur,et al.  Farewell, Lecture? , 2009, Science.

[60]  R. O'HARA,et al.  Population thinking and tree thinking in systematics , 1997 .

[61]  Norman G. Lederman Students' and teachers' conceptions of the nature of science: A review of the research , 1992 .

[62]  Scott F. Gilbert,et al.  Opening Darwin's black box: teaching evolution through developmental genetics , 2003, Nature Reviews Genetics.

[63]  N. Grishin,et al.  Genome trees and the tree of life. , 2002, Trends in genetics : TIG.