Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases.

Several phage-encoded peptidoglycan hydrolases have been found to share a conserved amidase domain with a variety of bacterial autolysins (N-acetylmuramoyl-L-alanine amidases), bacterial and eukaryotic glutathionylspermidine amidases, gamma-D-glutamyl-L-diamino acid endopeptidase and NLP/P60 family proteins. All these proteins contain conserved cysteine and histidine residues and hydrolyze gamma-glutamyl-containing substrates. These cysteine residues have been shown to be essential for activity of several of these amidases and their thiol groups apparently function as the nucleophiles in the catalytic mechanisms of all enzymes containing this domain. The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) superfamily includes a variety of previously uncharacterized proteins, including the tail assembly protein K of phage lambda. Some members of this superfamily are important surface antigens in pathogenic bacteria and might represent drug and/or vaccine targets.

[1]  K. Wolff,et al.  P45, an extracellular 45 kDa protein of Listeria monocytogenes with similarity to protein p60 and exhibiting peptidoglycan lytic activity , 2000, Archives of Microbiology.

[2]  D T Jones,et al.  Protein secondary structure prediction based on position-specific scoring matrices. , 1999, Journal of molecular biology.

[3]  A G Murzin,et al.  SCOP: a structural classification of proteins database for the investigation of sequences and structures. , 1995, Journal of molecular biology.

[4]  Vivek Anantharaman,et al.  Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes , 2003, Genome Biology.

[5]  G. Michel,et al.  Caractérisation d'une nouvelle endopeptidase spécifique des liaisons γ-d-glutamyl-l-lysine et γ-d-glutamyl-(l)meso-diaminopimélate de substrats peptidoglycaniques, chez Bacillus sphaericus 9602 au cours de la sporulation , 1979 .

[6]  Neil D. Rawlings,et al.  MEROPS: the protease database , 2002, Nucleic Acids Res..

[7]  C. H. Lin,et al.  Dissection of Glutathionylspermidine Synthetase/Amidase from Escherichia coli into Autonomously Folding and Functional Synthetase and Amidase Domains* , 1997, The Journal of Biological Chemistry.

[8]  Peer Bork,et al.  Recent improvements to the SMART domain-based sequence annotation resource , 2002, Nucleic Acids Res..

[9]  Steven E. Brenner,et al.  WebLogo: A sequence logo generator - eScholarship , 2004 .

[10]  C Sander,et al.  An evolutionary treasure: unification of a broad set of amidohydrolases related to urease , 1997, Proteins.

[11]  M. Pagni,et al.  Bacillus subtilis 168 gene lytF encodes a gamma-D-glutamate-meso-diaminopimelate muropeptidase expressed by the alternative vegetative sigma factor, sigmaD. , 1999, Microbiology.

[12]  Robert D. Finn,et al.  The Pfam protein families database , 2004, Nucleic Acids Res..

[13]  C. Valentin,et al.  Action d'endopeptidases de Bacillus sphaericus sur les peptidoglycanes bactériens et sur des fragments peptidoglycaniques* , 1983 .

[14]  Janet M Thornton,et al.  Sequence and structural differences between enzyme and nonenzyme homologs. , 2002, Structure.

[15]  M. Arnaud,et al.  Bacillus subtilis 168 genetic transformation mediated by outgrowing spores: necessity for cell contact , 1978, Journal of bacteriology.

[16]  Michael Y. Galperin,et al.  The COG database: a tool for genome-scale analysis of protein functions and evolution , 2000, Nucleic Acids Res..

[17]  A. Fairlamb,et al.  Characterization of recombinant glutathionylspermidine synthetase/amidase from Crithidia fasciculata. , 2002, The Biochemical journal.

[18]  A. Murzin,et al.  A protein catalytic framework with an N-terminal nucleophile is capable of self-activation , 1995, Nature.

[19]  Alex Bateman,et al.  The CHAP domain: a large family of amidases including GSP amidase and peptidoglycan hydrolases. , 2003, Trends in biochemical sciences.

[20]  M. Kula,et al.  An alternative mechanism for amidase signature enzymes. , 2002, Journal of molecular biology.

[21]  Tsute Chen,et al.  Cloning of the Streptococcus mutans Gene Encoding Glucan Binding Protein B and Analysis of Genetic Diversity and Protein Production in Clinical Isolates , 2001, Infection and Immunity.

[22]  S. Brunak,et al.  SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites , 1997 .

[23]  C. Brenner Catalysis in the nitrilase superfamily. , 2002, Current opinion in structural biology.

[24]  B. Eikmanns,et al.  Identification and Molecular Analysis of PcsB, a Protein Required for Cell Wall Separation of Group B Streptococcus , 2001, Journal of bacteriology.

[25]  W. Goebel,et al.  The iap gene of Listeria monocytogenes is essential for cell viability, and its gene product, p60, has bacteriolytic activity , 1993, Journal of bacteriology.

[26]  A. Fairlamb,et al.  A Single Enzyme Catalyses Formation of Trypanothione from Glutathione and Spermidine in Trypanosoma cruzi * , 2002, The Journal of Biological Chemistry.

[27]  R. Jayaswal,et al.  Sequence analysis of a Staphylococcus aureus gene encoding a peptidoglycan hydrolase activity. , 1991, Gene.

[28]  H. Misono,et al.  Biochemistry and molecular genetics of poly-γ-glutamate synthesis , 2002, Applied Microbiology and Biotechnology.

[29]  J. Wehland,et al.  IrpA , is highly homologous to monocytogenesPrfA-regulated gene in Listeria Identification and characterization of a novel , 1996 .

[30]  Arne Elofsson,et al.  Structure prediction meta server , 2001, Bioinform..

[31]  M. Loessner,et al.  Evidence for a Holin-Like Protein Gene Fully Embedded Out of Frame in the Endolysin Gene of Staphylococcus aureusBacteriophage 187 , 1999, Journal of bacteriology.

[32]  C. H. Lin,et al.  Evidence for a glutathionyl-enzyme intermediate in the amidase activity of the bifunctional glutathionylspermidine synthetase/amidase from Escherichia coli. , 1997, Biochemistry.

[33]  D. Karamata,et al.  The lytE Gene of Bacillus subtilis 168 Encodes a Cell Wall Hydrolase , 1998, Journal of bacteriology.

[34]  G. S. Chhatwal,et al.  Identification and Characterization of a Novel Secreted Immunoglobulin Binding Protein from Group A Streptococcus , 2001, Infection and Immunity.

[35]  M. Loessner,et al.  The two-component lysis system of Staphylococcus aureus bacteriophage Twort: a large TTG-start holin and an associated amidase endolysin. , 1998, FEMS microbiology letters.

[36]  M. Pagni,et al.  Bacillus subtilis 168 gene lytF encodes a γ-D-glutamate-meso-diaminopimelate muropeptidase expressed by the alternative vegetative sigma factor, σD , 1999 .