Minimum-Time Control of Boolean Networks
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[1] H. Bolouri. Computational Modeling of Gene Regulatory Networks - A Primer , 2008 .
[2] Edward R. Dougherty,et al. Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention , 2008, IEEE Transactions on Signal Processing.
[3] Aniruddha Datta,et al. External Control in Markovian Genetic Regulatory Networks , 2004, Machine Learning.
[4] Michael Margaliot,et al. Analysis of Discrete-Time Linear Switched Systems: A Variational Approach , 2011, SIAM J. Control. Optim..
[5] R. Laubenbacher,et al. Boolean models of bistable biological systems , 2009, 0912.2089.
[6] M. Ptashne. A Genetic Switch , 1986 .
[7] Daizhan Cheng,et al. State–Space Analysis of Boolean Networks , 2010, IEEE Transactions on Neural Networks.
[8] Nikola Kasabov,et al. COMPUTATIONAL MODELLING OF GENE REGULATORY NETWORKS , 2005 .
[9] M. Aldana. Boolean dynamics of networks with scale-free topology , 2003 .
[10] T. Zhou,et al. Optimal control for probabilistic Boolean networks. , 2010, IET systems biology.
[11] Michael Margaliot,et al. A second-order maximum principle for discrete-time bilinear control systems with applications to discrete-time linear switched systems , 2011, Autom..
[12] Michael Margaliot,et al. Lie-algebraic stability conditions for nonlinear switched systems and differential inclusions , 2006, Syst. Control. Lett..
[13] Michael Margaliot,et al. Mathematical modeling of the lambda switch: a fuzzy logic approach. , 2009, Journal of theoretical biology.
[14] Michael Margaliot,et al. A Maximum Principle for the Stability Analysis of Positive Bilinear Control Systems with Applications to Positive Linear Switched Systems , 2012, SIAM J. Control. Optim..
[15] Yin Zhao. A Floyd-like algorithm for optimization of mix-valued logical control networks , 2011, Proceedings of the 30th Chinese Control Conference.
[16] Stefan Bornholdt,et al. Boolean network models of cellular regulation: prospects and limitations , 2008, Journal of The Royal Society Interface.
[17] Daizhan Cheng,et al. Controllability and observability of Boolean control networks , 2009, Autom..
[18] Grzegorz Wegrzyn,et al. Genetic switches during bacteriophage lambda development. , 2005, Progress in nucleic acid research and molecular biology.
[19] M. Aldana,et al. From Genes to Flower Patterns and Evolution: Dynamic Models of Gene Regulatory Networks , 2006, Journal of Plant Growth Regulation.
[20] Z. Szallasi,et al. Modeling the normal and neoplastic cell cycle with "realistic Boolean genetic networks": their application for understanding carcinogenesis and assessing therapeutic strategies. , 1998, Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing.
[21] Daizhan Cheng,et al. Disturbance Decoupling of Boolean Control Networks , 2011, IEEE Transactions on Automatic Control.
[22] M. Ng,et al. Control of Boolean networks: hardness results and algorithms for tree structured networks. , 2007, Journal of theoretical biology.
[23] Michael Margaliot,et al. On the Stability of Positive Linear Switched Systems Under Arbitrary Switching Laws , 2009, IEEE Transactions on Automatic Control.
[24] A. Wagner,et al. Multifunctionality and robustness trade-offs in model genetic circuits. , 2008, Biophysical journal.
[25] Stuart A. Kauffman,et al. The origins of order , 1993 .
[26] Michael Margaliot,et al. A Maximum Principle for Single-Input Boolean Control Networks , 2011, IEEE Transactions on Automatic Control.
[27] A. Arkin,et al. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. , 1998, Genetics.
[28] Joel L. Schiff,et al. Cellular Automata: A Discrete View of the World (Wiley Series in Discrete Mathematics & Optimization) , 2007 .
[29] E. Gilbert,et al. Computation of minimum-time feedback control laws for discrete-time systems with state-control constraints , 1987 .
[30] Yoav Sharon,et al. Third-Order Nilpotency, Finite Switchings and Asymptotic Stability , 2005, Proceedings of the 44th IEEE Conference on Decision and Control.
[31] B. Samuelsson,et al. Superpolynomial growth in the number of attractors in Kauffman networks. , 2003, Physical review letters.
[32] Carsten Peterson,et al. Random Boolean network models and the yeast transcriptional network , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[33] E. Dougherty,et al. Gene perturbation and intervention in probabilistic Boolean networks. , 2002, Bioinformatics.
[34] Ashish Choudhury,et al. Control approaches for probabilistic gene regulatory networks - What approaches have been developed for addreassinig the issue of intervention? , 2007, IEEE Signal Processing Magazine.
[35] G. K. Ackers,et al. Quantitative model for gene regulation by lambda phage repressor. , 1982, Proceedings of the National Academy of Sciences of the United States of America.
[36] Daizhan Cheng,et al. Input-State Approach to Boolean Networks , 2009, IEEE Transactions on Neural Networks.
[37] H. Othmer,et al. The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster. , 2003, Journal of theoretical biology.
[38] A. Agrachev,et al. Control Theory from the Geometric Viewpoint , 2004 .
[39] Michael Margaliot,et al. Controllability of Boolean control networks via the Perron-Frobenius theory , 2012, Autom..
[40] B. Drossel,et al. Number and length of attractors in a critical Kauffman model with connectivity one. , 2004, Physical review letters.
[41] M. Hestenes. Calculus of variations and optimal control theory , 1966 .
[42] Abraham Kandel,et al. Foundations of Digital Logic Design , 1998 .
[43] Daizhan Cheng,et al. Realization of Boolean control networks , 2010, Autom..
[44] R. Shorten,et al. Some results on the stability of positive switched linear systems , 2004, 2004 43rd IEEE Conference on Decision and Control (CDC) (IEEE Cat. No.04CH37601).
[45] Aniruddha Datta,et al. Optimal infinite horizon control for probabilistic Boolean networks , 2006, 2006 American Control Conference.
[46] M. Margaliot,et al. A Pontryagin Maximum Principle for Multi – Input Boolean Control Networks ⋆ , 2011 .
[47] M.H. Hassoun,et al. Fundamentals of Artificial Neural Networks , 1996, Proceedings of the IEEE.
[48] Daizhan Cheng,et al. A Linear Representation of Dynamics of Boolean Networks , 2010, IEEE Transactions on Automatic Control.
[49] R. Albert,et al. Predicting Essential Components of Signal Transduction Networks: A Dynamic Model of Guard Cell Abscisic Acid Signaling , 2006, PLoS biology.
[50] Albert,et al. Dynamics of complex systems: scaling laws for the period of boolean networks , 2000, Physical review letters.
[51] Tania G. Leishman,et al. The Emergence of Social Consensus in Boolean Networks , 2007, 2007 IEEE Symposium on Artificial Life.
[52] Michael Margaliot,et al. Observability of Boolean networks: A graph-theoretic approach , 2013, Autom..
[53] Michael Margaliot,et al. Nice reachability for planar bilinear control systems with applications to planar linear switched systems , 2009, IEEE Transactions on Automatic Control.
[54] Edward R. Dougherty,et al. Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks , 2002, Bioinform..
[55] D. Court,et al. Switches in bacteriophage lambda development. , 2005, Annual review of genetics.
[56] J. Vohradský. Neural Model of the Genetic Network* , 2001, The Journal of Biological Chemistry.
[57] S. Kauffman. Metabolic stability and epigenesis in randomly constructed genetic nets. , 1969, Journal of theoretical biology.
[58] Michael Margaliot,et al. Stability analysis of switched systems using variational principles: An introduction , 2006, Autom..
[59] S. Brahmachari,et al. Boolean network analysis of a neurotransmitter signaling pathway. , 2007, Journal of theoretical biology.
[60] G. B. Pierce,et al. Differentiation of malignant to benign cells. , 1971, Cancer research.
[61] Uri Alon,et al. An Introduction to Systems Biology , 2006 .
[62] M. Chyba,et al. Singular Trajectories and Their Role in Control Theory , 2003, IEEE Transactions on Automatic Control.
[63] Ettore Fornasini,et al. Reachability of a class of discrete-time positive switched systems , 2009, Proceedings of the 48h IEEE Conference on Decision and Control (CDC) held jointly with 2009 28th Chinese Control Conference.
[64] Michael Margaliot,et al. Mathematical Modeling of the Λ Switch --a Fuzzy Logic Approach , 2009 .
[65] R. Thomas,et al. Dynamical behaviour of biological regulatory networks--II. Immunity control in bacteriophage lambda. , 1995, Bulletin of mathematical biology.
[66] N. Barabanov. Lyapunov exponent and joint spectral radius: some known and new results , 2005, Proceedings of the 44th IEEE Conference on Decision and Control.
[67] P. Berck,et al. Calculus of variations and optimal control theory , 1993 .
[68] Tomáš Helikar,et al. Boolean modeling of biochemical networks , 2011 .
[69] Daizhan Cheng,et al. Analysis and Control of Boolean Networks , 2011 .
[70] B. Derrida,et al. Random networks of automata: a simple annealed approximation , 1986 .
[71] Sui Huang,et al. Regulation of Cellular States in Mammalian Cells from a Genomewide View , 2002, Gene Regulations and Metabolism.
[72] R. Solé,et al. Lyapunov exponents in random Boolean networks , 1999, adap-org/9907001.
[73] Daizhan Cheng,et al. Input-state incidence matrix of Boolean control networks and its applications , 2010, Syst. Control. Lett..
[74] Q. Ouyang,et al. The yeast cell-cycle network is robustly designed. , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[75] Paul Cull,et al. Control of switching nets , 1975, Biological Cybernetics.
[76] Matthew S Turner,et al. Functionality and metagraph disintegration in boolean networks. , 2011, Journal of theoretical biology.
[77] Edward R. Dougherty,et al. From Boolean to probabilistic Boolean networks as models of genetic regulatory networks , 2002, Proc. IEEE.
[78] Madalena Chaves,et al. Robustness and fragility of Boolean models for genetic regulatory networks. , 2005, Journal of theoretical biology.
[79] Paul Cull. Linear analysis of switching nets , 2004, Kybernetik.
[80] R. Hughes,et al. Cold Spring Harbor , 2014 .
[81] Robert Shorten,et al. On the Stability of Switched Positive Linear Systems , 2007, IEEE Transactions on Automatic Control.
[82] D. Cheng,et al. SEMI-TENSOR PRODUCT OF MATRICES AND ITS SOME APPLICATIONS TO PHYSICS , 2003 .