The development of a sensitive fluorescent protein-based transcript reporter for high throughput screening of negative modulators of lncRNAs

[1]  A. Miyawaki,et al.  Two Distinct Fluorescence States of the Ligand-Induced Green Fluorescent Protein UnaG. , 2017, Biophysical journal.

[2]  T. He,et al.  lncRNA H19 mediates BMP9-induced osteogenic differentiation of mesenchymal stem cells (MSCs) through Notch signaling. , 2017, Oncotarget.

[3]  T. He,et al.  Characterization of retroviral infectivity and superinfection resistance during retrovirus-mediated transduction of mammalian cells , 2017, Gene Therapy.

[4]  T. He,et al.  Engineering the Rapid Adenovirus Production and Amplification (RAPA) Cell Line to Expedite the Generation of Recombinant Adenoviruses , 2017, Cellular Physiology and Biochemistry.

[5]  T. Wandless,et al.  A Novel Destabilizing Domain Based on a Small-Molecule Dependent Fluorophore. , 2016, ACS chemical biology.

[6]  T. Itakura,et al.  Eel green fluorescent protein is associated with resistance to oxidative stress. , 2016, Comparative biochemistry and physiology. Toxicology & pharmacology : CBP.

[7]  Howard Y. Chang,et al.  Unique features of long non-coding RNA biogenesis and function , 2015, Nature Reviews Genetics.

[8]  A. Wierzbicki,et al.  Control of Chromatin Structure by Long Noncoding RNA. , 2015, Trends in cell biology.

[9]  Pei Han,et al.  Long non-coding RNA and chromatin remodeling , 2015, RNA biology.

[10]  Yinglin Xia,et al.  TqPCR: A Touchdown qPCR Assay with Significantly Improved Detection Sensitivity and Amplification Efficiency of SYBR Green qPCR , 2015, PloS one.

[11]  E. Izaurralde,et al.  Towards a molecular understanding of microRNA-mediated gene silencing , 2015, Nature Reviews Genetics.

[12]  B. Herrmann,et al.  Long noncoding RNAs in organogenesis: making the difference. , 2015, Trends in genetics : TIG.

[13]  P. Kapranov,et al.  The Landscape of long noncoding RNA classification. , 2015, Trends in genetics : TIG.

[14]  S. Dhanasekaran,et al.  The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.

[15]  T. He,et al.  A Simplified and Versatile System for the Simultaneous Expression of Multiple siRNAs in Mammalian Cells Using Gibson DNA Assembly , 2014, PloS one.

[16]  Mitchell Guttman,et al.  Long noncoding RNAs: an emerging link between gene regulation and nuclear organization. , 2014, Trends in cell biology.

[17]  C. Feschotte,et al.  Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications. , 2014, Trends in genetics : TIG.

[18]  James J. Driscoll,et al.  Correlation of long non-coding RNA expression with metastasis, drug resistance and clinical outcome in cancer , 2014, Oncotarget.

[19]  K. Hui,et al.  Mechanism of cancer drug resistance and the involvement of noncoding RNAs. , 2014, Current medicinal chemistry.

[20]  Keith W. Vance,et al.  Transcriptional regulatory functions of nuclear long noncoding RNAs , 2014, Trends in genetics : TIG.

[21]  X. Chen,et al.  Overexpression of Ad5 precursor terminal protein accelerates recombinant adenovirus packaging and amplification in HEK-293 packaging cells , 2014, Gene Therapy.

[22]  J. Steitz,et al.  The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones , 2014, Cell.

[23]  Xuemei Chen,et al.  Traffic into silence: endomembranes and post-transcriptional RNA silencing , 2014, The EMBO journal.

[24]  T. He,et al.  Adenovirus-Mediated Gene Transfer in Mesenchymal Stem Cells Can Be Significantly Enhanced by the Cationic Polymer Polybrene , 2014, PloS one.

[25]  K. Morris,et al.  Evolutionary conservation of long non-coding RNAs; sequence, structure, function. , 2014, Biochimica et biophysica acta.

[26]  K. Morris,et al.  Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs , 2014, Epigenetics.

[27]  T. He,et al.  Destabilization of Heterologous Proteins Mediated by the GSK3β Phosphorylation Domain of the β-Catenin Protein , 2013, Cellular Physiology and Biochemistry.

[28]  Sarah Geisler,et al.  RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts , 2013, Nature Reviews Molecular Cell Biology.

[29]  S. Giordano,et al.  Resistance to targeted therapies: a role for microRNAs? , 2013, Trends in molecular medicine.

[30]  D. Bartel,et al.  lincRNAs: Genomics, Evolution, and Mechanisms , 2013, Cell.

[31]  A. Miyawaki,et al.  A Bilirubin-Inducible Fluorescent Protein from Eel Muscle , 2013, Cell.

[32]  C. Wahlestedt.  Targeting long non-coding RNA to therapeutically upregulate gene expression , 2013, Nature Reviews Drug Discovery.

[33]  V. Bajic,et al.  On the classification of long non-coding RNAs , 2013, RNA biology.

[34]  Howard Y. Chang,et al.  Long Noncoding RNAs: Cellular Address Codes in Development and Disease , 2013, Cell.

[35]  G. Hannon,et al.  Dogma derailed: the many influences of RNA on the genome. , 2013, Molecular cell.

[36]  Nadav S. Bar,et al.  Landscape of transcription in human cells , 2012, Nature.

[37]  Takako Noguchi,et al.  Cellular bioluminescence imaging. , 2012, Cold Spring Harbor protocols.

[38]  T. He,et al.  Growth hormone synergizes with BMP9 in osteogenic differentiation by activating the JAK/STAT/IGF1 pathway in murine multilineage cells , 2012, Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research.

[39]  B. Faircloth,et al.  Primer3—new capabilities and interfaces , 2012, Nucleic acids research.

[40]  Jorge S Reis-Filho,et al.  Genetic heterogeneity and cancer drug resistance. , 2012, The Lancet. Oncology.

[41]  T. He,et al.  Conditionally Immortalized Mouse Embryonic Fibroblasts Retain Proliferative Activity without Compromising Multipotent Differentiation Potential , 2012, PloS one.

[42]  M. Esteller.  Non-coding RNAs in human disease , 2011, Nature Reviews Genetics.

[43]  T. He,et al.  Tetrandrine Inhibits Wnt/β-Catenin Signaling and Suppresses Tumor Growth of Human Colorectal Cancer , 2011, Molecular Pharmacology.

[44]  Howard Y. Chang,et al.  Long noncoding RNA in genome regulation , 2010, RNA biology.

[45]  Christopher H Contag,et al.  Guided by the light: visualizing biomolecular processes in living animals with bioluminescence. , 2010, Current opinion in chemical biology.

[46]  J. Mattick,et al.  Non‐coding RNAs: regulators of disease , 2010, The Journal of pathology.

[47]  A. Jacquier.  The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs , 2009, Nature Reviews Genetics.

[48]  T. He,et al.  Activation of RXR and RAR signaling promotes myogenic differentiation of myoblastic C2C12 cells. , 2009, Differentiation; research in biological diversity.

[49]  T. He,et al.  Retinoic acid signalling induces the differentiation of mouse fetal liver‐derived hepatic progenitor cells , 2009, Liver international : official journal of the International Association for the Study of the Liver.

[50]  T. He,et al.  Wnt antagonist SFRP3 inhibits the differentiation of mouse hepatic progenitor cells , 2009, Journal of cellular biochemistry.

[51]  Antonin Morillon,et al.  Pervasive transcription constitutes a new level of eukaryotic genome regulation , 2009, EMBO reports.

[52]  Olivier Voinnet,et al.  The long and the short of noncoding RNAs. , 2009, Current opinion in cell biology.

[53]  Michael F. Lin,et al.  Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.

[54]  Jianghong Rao,et al.  Recent Developments of Biological Reporter Technology for Detecting Gene Expression , 2008, Biotechnology & genetic engineering reviews.

[55]  Wei Jiang,et al.  Selection and validation of optimal siRNA target sites for RNAi-mediated gene silencing. , 2007, Gene.

[56]  T. Gingeras,et al.  Genome-wide transcription and the implications for genomic organization , 2007, Nature Reviews Genetics.

[57]  K. Kinzler,et al.  A protocol for rapid generation of recombinant adenoviruses using the AdEasy system , 2007, Nature Protocols.

[58]  J. Mattick,et al.  Non-coding RNA. , 2006, Human molecular genetics.

[59]  S. Salzberg,et al.  The Transcriptional Landscape of the Mammalian Genome , 2005, Science.

[60]  S. Kain,et al.  Overview of Genetic Reporter Systems , 2004, Current protocols in molecular biology.

[61]  Ram Dixit,et al.  Cell damage and reactive oxygen species production induced by fluorescence microscopy: effect on mitosis and guidelines for non-invasive fluorescence microscopy. , 2003, The Plant journal : for cell and molecular biology.

[62]  E. Schenborn,et al.  Reporter gene vectors and assays , 1999, Molecular biotechnology.

[63]  S. Kain,et al.  Generation of Destabilized Green Fluorescent Protein as a Transcription Reporter* , 1998, The Journal of Biological Chemistry.

[64]  J. Cook,et al.  Reporter genes: application to the study of mammalian gene transcription. , 1990, Analytical biochemistry.

[65]  J. Mellor,et al.  The Interleaved Genome. , 2016, Trends in genetics : TIG.

[66]  Sanjiv Sam Gambhir,et al.  Noninvasive imaging of molecular events with bioluminescent reporter genes in living subjects. , 2007, Methods in molecular biology.

[67]  C. Contag,et al.  Advances in in vivo bioluminescence imaging of gene expression. , 2002, Annual review of biomedical engineering.

[68]  K. Kinzler,et al.  A simplified system for generating recombinant adenoviruses. , 1998, Proceedings of the National Academy of Sciences of the United States of America.