Using hyperspectral imaging to discriminate yellow leaf curl disease in tomato leaves

This paper investigated the possibility of discriminating tomato yellow leaf curl disease by a hyperspectral imaging technique. A hyperspecral imaging system collected hyperspectral images of both healthy and infected tomato leaves. The reflectance spectra, first derivative reflectance spectra and absolute reflectance difference spectra in the wavelength range of 500–1000 nm of both background and the leaf area were analyzed to select sensitive wavelengths and band ratios. 853 nm was selected to create a mask image for background segmentation, while 720 nm from the reflectance spectra, four peaks (560, 575, 712, and 729 nm) from the first derivative spectra and, four wavelengths with higher values (586, 720 nm) and lower values (690, 840 nm) in the absolute difference spectra were selected as a set of sensitive wavelengths. Four band ratio images (560/575, 712/729, 586/690, and 720/840 nm) were compared with four widely used vegetation indices (VIs). 24 texture features were extracted using grey level co-occurrence matrix (GLCM), respectively. The performance of each feature was evaluated by receiver operator characteristic (ROC) curve analysis. The best threshold values of each feature were calculated by Yonden’s index. Mean value of correlation (COR_MEAN) extracted from the band ratio image (720/840 nm) had the best performance, whose AUC value was 1.0. The discrimination result for a validation set based on its best threshold value was 100%. This research also demonstrated that multispectral images at 560, 575 and 720 nm have a potential for detecting tomato yellow leaf curl virus infection in field applications.

[1]  The Red Edge Shift: An Explanation Of Its Relationship To Stress And The Concentration Of Chlorophyll A , 1991, [Proceedings] IGARSS'91 Remote Sensing: Global Monitoring for Earth Management.

[2]  M. Martínez-Larrad,et al.  Ability of Lipid Accumulation Product to Identify Metabolic Syndrome in Healthy Men From Buenos Aires , 2009, Diabetes Care.

[3]  Ruiliang Pu,et al.  Detecting powdery mildew of winter wheat using leaf level hyperspectral measurements , 2012 .

[4]  P. Thenkabail,et al.  Hyperspectral Vegetation Indices and Their Relationships with Agricultural Crop Characteristics , 2000 .

[5]  Michael Unser,et al.  Multiresolution Feature Extraction and Selection for Texture Segmentation , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[6]  Yung-Chang Chen,et al.  Texture features for classification of ultrasonic liver images , 1992, IEEE Trans. Medical Imaging.

[7]  Stephen J. Symons,et al.  Detection of sprout damage in Canada Western Red Spring wheat with multiple wavebands using visible/near-infrared hyperspectral imaging , 2010 .

[8]  Pablo J. Zarco-Tejada,et al.  High-resolution airborne hyperspectral and thermal imagery for early detection of Verticillium wilt of olive using fluorescence, temperature and narrow-band spectral indices , 2013 .

[9]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[10]  Raghu Kacker,et al.  Bootstrap Variability Studies in ROC Analysis on Large Datasets , 2014, Commun. Stat. Simul. Comput..

[11]  C. Field,et al.  A narrow-waveband spectral index that tracks diurnal changes in photosynthetic efficiency , 1992 .

[12]  B. Rock,et al.  Measurement of leaf relative water content by infrared reflectance , 1987 .

[13]  J. Navas-Castillo,et al.  Founder effect, plant host, and recombination shape the emergent population of begomoviruses that cause the tomato yellow leaf curl disease in the Mediterranean basin. , 2007, Virology.

[14]  Hui Zhang,et al.  Molecular characterization and pathogenicity of tomato yellow leaf curl virus in China , 2009, Virus Genes.

[15]  J. Polston,et al.  Pymetrozine interferes with transmission ofTomato yellow leaf curl virus by the whiteflyBemisia tabaci , 2003, Phytoparasitica.

[16]  Wilhelm Burger,et al.  Digital Image Processing - An Algorithmic Introduction using Java , 2008, Texts in Computer Science.

[17]  Seung-Chul Yoon,et al.  Near-infrared Hyperspectral Reflectance Imaging for Early Detection of Sour Skin Disease in Vidalia Sweet Onions , 2010 .

[18]  Erich-Christian Oerke,et al.  Use of imaging spectroscopy to discriminate symptoms caused by Heterodera schachtii and Rhizoctonia solani on sugar beet , 2011, Precision Agriculture.

[19]  Won Suk Lee,et al.  Original paper: Diagnosis of bacterial spot of tomato using spectral signatures , 2010 .

[20]  Shir-Kuan Lin,et al.  AUTOMATIC INSPECTION SYSTEM FOR DEFECTS OF PRINTED ART TILE BASED ON TEXTURE FEATURE ANALYSIS , 2014 .

[21]  Jingfeng Huang,et al.  Discrimination of rice panicles by hyperspectral reflectance data based on principal component analysis and support vector classification , 2010, Journal of Zhejiang University SCIENCE B.

[22]  S. Diffie,et al.  Whitefly Population Dynamics and Evaluation of Whitefly-Transmitted Tomato Yellow Leaf Curl Virus (TYLCV)-Resistant Tomato Genotypes as Whitefly and TYLCV Reservoirs , 2012, Journal of economic entomology.

[23]  Nicolai Petkov,et al.  Comparison of texture features based on Gabor filters , 2002, IEEE Trans. Image Process..

[24]  Nicolai Petkov,et al.  Comparison of texture features based on Gabor filters , 1999, Proceedings 10th International Conference on Image Analysis and Processing.

[25]  Y. Gafni,et al.  The Viral Etiology of Tomato Yellow Leaf Curl Disease - A Review , 2018 .

[26]  Kuo-Yi Huang Application of artificial neural network for detecting Phalaenopsis seedling diseases using color and texture features , 2007 .

[27]  Daniel Marçal de Queiroz,et al.  Fall Armyworm Damaged Maize Plant Identification using Digital Images , 2003 .

[28]  Navid Razmjooy,et al.  A real-time mathematical computer method for potato inspection using machine vision , 2012, Comput. Math. Appl..

[29]  J. Peñuelas,et al.  The reflectance at the 950–970 nm region as an indicator of plant water status , 1993 .

[30]  B. S. Manjunath,et al.  Texture Features for Browsing and Retrieval of Image Data , 1996, IEEE Trans. Pattern Anal. Mach. Intell..