Recognizing lung cancer and stages using a self-developed electronic nose system

Exhaled breath contains thousands of gaseous volatile organic compounds (VOCs) that could be used as non-invasive biomarkers of lung cancer. Breath-based lung cancer screening has attracted wide attention on account of its convenience, low cost and easy popularization. In this paper, the research of lung cancer detection and staging is conducted by the self-developed electronic nose (e-nose) system. In order to investigate the performance of the device in distinguishing lung cancer patients from healthy controls, two feature extraction methods and two different classification models were adopted. Among all the models, kernel principal component analysis (KPCA) combined with extreme gradient boosting (XGBoost) achieved the best results among 235 breath samples. The accuracy, sensitivity and specificity of e-nose system were 93.59%, 95.60% and 91.09%, respectively. Meanwhile, the device could innovatively classify stages of 90 lung cancer patients (i.e., 44 stage III and 46 stage IV). Experimental results indicated that the recognition accuracy of lung cancer stages was more than 80%. Further experiments of this research also showed that the combination of sensor array and pattern recognition algorithms could identify and distinguish the expiratory characteristics of lung cancer, smoking and other respiratory diseases.

[1]  Andrea Bonarini,et al.  Lung Cancer Identification by an Electronic Nose based on an Array of MOS Sensors , 2007, 2007 International Joint Conference on Neural Networks.

[2]  P. Devilee,et al.  Warburg tumours and the mechanisms of mitochondrial tumour suppressor genes. Barking up the right tree? , 2010, Current opinion in genetics & development.

[3]  J. Siemiatycki,et al.  Phenotypes of lung cancer and statistical interactions between tobacco smoking and occupational exposure to asbestos and crystalline silica from a large case-only study: The CaProMat study. , 2017, Lung cancer.

[4]  R. Ionescu,et al.  Diagnosis of Human Echinococcosis via Exhaled Breath Analysis: A Promise for Rapid Diagnosis of Infectious Diseases Caused by Helminths , 2018, The Journal of infectious diseases.

[5]  Kazuo Sato,et al.  Diagnosis by Volatile Organic Compounds in Exhaled Breath from Lung Cancer Patients Using Support Vector Machine Algorithm , 2017, Sensors.

[6]  T Suzuki,et al.  Sensitivity and specificity of lung cancer screening using chest low-dose computed tomography , 2008, British Journal of Cancer.

[7]  David Smith,et al.  Quantification of acetaldehyde released by lung cancer cells in vitro using selected ion flow tube mass spectrometry. , 2003, Rapid communications in mass spectrometry : RCM.

[8]  Wang Li,et al.  Lung Cancer Screening Based on Type-different Sensor Arrays , 2017, Scientific Reports.

[9]  B. Kremer,et al.  Training and Validating a Portable Electronic Nose for Lung Cancer Screening , 2018, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[10]  Zheng Xin Yong,et al.  Using a chemiresistor-based alkane sensor to distinguish exhaled breaths of lung cancer patients from subjects with no lung cancer. , 2016, Journal of thoracic disease.

[11]  Ping Wang,et al.  A study of an electronic nose for detection of lung cancer based on a virtual SAW gas sensors array and imaging recognition method , 2005 .

[12]  J. Friedman Greedy function approximation: A gradient boosting machine. , 2001 .

[13]  Giorgio Pennazza,et al.  Volatile signature for the early diagnosis of lung cancer , 2016, Journal of breath research.

[14]  Bernhard Schölkopf,et al.  Nonlinear Component Analysis as a Kernel Eigenvalue Problem , 1998, Neural Computation.

[15]  P. Albertsson,et al.  Positron emission tomography and computed tomographic imaging (PET/CT) for dose planning purposes of thoracic radiation with curative intent in lung cancer patients: A systematic review and meta-analysis. , 2017, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[16]  Renato Martins,et al.  NCCN Guidelines Insights: Non-Small Cell Lung Cancer, Version 5.2018. , 2018, Journal of the National Comprehensive Cancer Network : JNCCN.

[17]  Y. Ung,et al.  18Fluorodeoxyglucose positron emission tomography in the diagnosis and staging of lung cancer: a systematic review. , 2007, Journal of the National Cancer Institute.

[18]  A. Jemal,et al.  Cancer statistics, 2017 , 2017, CA: a cancer journal for clinicians.

[19]  Vladimir Vapnik,et al.  Support-vector networks , 2004, Machine Learning.

[20]  L. Tanoue,et al.  Methods for staging non-small cell lung cancer: Diagnosis and management of lung cancer, 3rd ed: American College of Chest Physicians evidence-based clinical practice guidelines. , 2013, Chest.

[21]  A. Jemal,et al.  Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries , 2018, CA: a cancer journal for clinicians.

[22]  Tianqi Chen,et al.  XGBoost: A Scalable Tree Boosting System , 2016, KDD.

[23]  H. Groen,et al.  Preoperative staging of non-small-cell lung cancer with positron-emission tomography. , 2000, The New England journal of medicine.

[24]  Ming-Sound Tsao,et al.  Low Prevalence of High-Grade Lesions Detected With Autofluorescence Bronchoscopy in the Setting of Lung Cancer Screening in the Pan-Canadian Lung Cancer Screening Study. , 2015, Chest.

[25]  Haluk Kulah,et al.  Breath sensors for lung cancer diagnosis. , 2015, Biosensors & bioelectronics.

[26]  Qi Liu,et al.  Automatic nodule detection for lung cancer in CT images: A review , 2018, Comput. Biol. Medicine.

[27]  W. Wiegerinck,et al.  The potential of a portable, point-of-care electronic nose to diagnose tuberculosis. , 2017, The Journal of infection.

[28]  Madara Tirzïte,et al.  Detection of lung cancer with electronic nose and logistic regression analysis , 2018, Journal of breath research.

[29]  B. Buszewski,et al.  Searching for selected VOCs in human breath samples as potential markers of lung cancer. , 2019, Lung cancer.

[30]  Ping Wang,et al.  A Portable Electronic Nose Intended for Home Healthcare Based on a Mixed Sensor Array and Multiple Desorption Methods , 2011 .

[31]  L. Freitag,et al.  Ion mobility spectrometry for the detection of volatile organic compounds in exhaled breath of patients with lung cancer: results of a pilot study , 2009, Thorax.

[32]  P. Mazzone,et al.  Analysis of volatile organic compounds in the exhaled breath for the diagnosis of lung cancer. , 2008, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[33]  R. Booton,et al.  CT screening for lung cancer: Are we ready to implement in Europe? , 2019, Lung cancer.

[34]  Onofrio Resta,et al.  An electronic nose in the discrimination of patients with non-small cell lung cancer and COPD. , 2009, Lung cancer.

[35]  Yuepu Pu,et al.  Differential expression profiles of microRNAs as potential biomarkers for the early diagnosis of lung cancer. , 2017, Oncology reports.

[36]  David Zhang,et al.  Sparse representation-based classification for breath sample identification , 2011 .

[37]  W. De Wever,et al.  Additional value of PET-CT in the staging of lung cancer: comparison with CT alone, PET alone and visual correlation of PET and CT , 2006, European Radiology.

[38]  N. Obuchowski,et al.  Lung Cancer Screening with Computer Aided Detection Chest Radiography: Design and Results of a Randomized, Controlled Trial , 2013, PloS one.

[39]  Hossam Haick,et al.  Detection of Lung Cancer and EGFR Mutation by Electronic Nose System , 2017, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.

[40]  Anton Amann,et al.  Lung cancer detection by proton transfer reaction mass-spectrometric analysis of human breath gas , 2007 .

[41]  Krishna C. Persaud,et al.  Analysis of volatile organic compounds in exhaled breath for lung cancer diagnosis using a sensor system , 2018 .

[42]  C. Domenici,et al.  Electronic Nose as a Novel Method for Diagnosing Cancer: A Systematic Review , 2020, Biosensors.

[43]  Randall K Ten Haken,et al.  Effect of Midtreatment PET/CT-Adapted Radiation Therapy With Concurrent Chemotherapy in Patients With Locally Advanced Non–Small-Cell Lung Cancer: A Phase 2 Clinical Trial , 2017, JAMA oncology.

[44]  Hardik J Pandya,et al.  Electronic nose: a non-invasive technology for breath analysis of diabetes and lung cancer patients , 2019, Journal of breath research.

[45]  M P van der Schee,et al.  Integration of electronic nose technology with spirometry: validation of a new approach for exhaled breath analysis , 2014, Journal of breath research.

[46]  M. P. van der Schee,et al.  Breath biopsy for early detection and precision medicine in cancer , 2018, Ecancermedicalscience.

[47]  J. Haugen,et al.  Standardization methods for handling instrument related signal shift in gas-sensor array measurement data , 2002 .

[48]  Giorgio Pennazza,et al.  An investigation on electronic nose diagnosis of lung cancer. , 2010, Lung cancer.

[49]  Amalia Berna,et al.  Metal Oxide Sensors for Electronic Noses and Their Application to Food Analysis , 2010, Sensors.

[50]  R.D.S. Yadava,et al.  Preprocessing of SAW Sensor Array Data and Pattern Recognition , 2009, IEEE Sensors Journal.

[51]  Hossam Haick,et al.  Volatile organic compounds of lung cancer and possible biochemical pathways. , 2012, Chemical reviews.

[52]  K. Shen,et al.  Lung cancer screening: from imaging to biomarker , 2013, Biomarker Research.