Transcriptomic screening for cyclotides and other cysteine-rich proteins in the metallophyte Viola baoshanensis.
暂无分享,去创建一个
D. Craik | Zebo Huang | Bing Yang | A. Baker | Jintian Li | B. Liao | Jun Zhang | Wensheng Shu | Xiaojie Zhang | Dehua Li
[1] D. Craik,et al. Two Blast-independent tools, CyPerl and CyExcel, for harvesting hundreds of novel cyclotides and analogues from plant genomes and protein databases , 2015, Planta.
[2] Chanhui Lee,et al. The rice RING E3 ligase, OsCTR1, inhibits trafficking to the chloroplasts of OsCP12 and OsRP1, and its overexpression confers drought tolerance in Arabidopsis. , 2014, Plant, cell & environment.
[3] Guojing Li,et al. Arabidopsis cysteine-rich receptor-like kinase 45 positively regulates disease resistance to Pseudomonas syringae. , 2013, Plant physiology and biochemistry : PPB.
[4] Susan Wray,et al. Oxytocic plant cyclotides as templates for peptide G protein-coupled receptor ligand design , 2013, Proceedings of the National Academy of Sciences.
[5] C. Gruber,et al. From ethnopharmacology to drug design , 2013, Communicative & integrative biology.
[6] F. Taguchi-Shiobara,et al. Rice DEP1, encoding a highly cysteine-rich G protein γ subunit, confers cadmium tolerance on yeast cells and plants , 2013, Journal of experimental botany.
[7] D. Craik,et al. A systematic approach to document cyclotide distribution in plant species from genomic, transcriptomic, and peptidomic analysis. , 2013, Biopolymers.
[8] David J Craik,et al. Cyclotides as grafting frameworks for protein engineering and drug design applications. , 2013, Biopolymers.
[9] G. Wong,et al. Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants. , 2013, Biopolymers.
[10] D. Craik,et al. Cyclotides Suppress Human T-Lymphocyte Proliferation by an Interleukin 2-Dependent Mechanism , 2013, PloS one.
[11] Xiaoe Yang,et al. Transcriptomic Analysis of Cadmium Stress Response in the Heavy Metal Hyperaccumulator Sedum alfredii Hance , 2013, PloS one.
[12] Anil Kumar Singh,et al. Overexpression of Camellia sinensis Thaumatin-Like Protein, CsTLP in Potato Confers Enhanced Resistance to Macrophomina phaseolina and Phytophthora infestans Infection , 2013, Molecular Biotechnology.
[13] D. G. Pinheiro,et al. High-throughput sequencing of black pepper root transcriptome , 2012, BMC Plant Biology.
[14] W. Shu,et al. Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa). , 2012, The New phytologist.
[15] R. Lyons,et al. Cyclotides Associate with Leaf Vasculature and Are the Products of a Novel Precursor in Petunia (Solanaceae)* , 2012, The Journal of Biological Chemistry.
[16] Roman Huber,et al. Do plant cyclotides have potential as immunosuppressant peptides? , 2012, Journal of natural products.
[17] C. Smart,et al. Over-expression of snakin-2 and extensin-like protein genes restricts pathogen invasiveness and enhances tolerance to Clavibacter michiganensis subsp. michiganensis in transgenic tomato (Solanum lycopersicum) , 2012, Transgenic Research.
[18] R. Scandurra,et al. Zinc to cadmium replacement in the A. thaliana SUPERMAN Cys₂ His₂ zinc finger induces structural rearrangements of typical DNA base determinant positions. , 2011, Biopolymers.
[19] J. Tam,et al. Discovery of a Linear Cyclotide from the Bracelet Subfamily and Its Disulfide Mapping by Top-down Mass Spectrometry* , 2011, The Journal of Biological Chemistry.
[20] D. Shah,et al. Stable integration and expression of a plant defensin in tomato confers resistance to fusarium wilt , 2010, GM crops.
[21] B. Liao,et al. Successful Micropropagation of the Cadmium Hyperaccumulator Viola Baoshanensis (Violaceae) , 2010, International journal of phytoremediation.
[22] Anton Nekrutenko,et al. Manipulation of FASTQ data with Galaxy , 2010, Bioinform..
[23] B. Liao,et al. Pb and Zn Accumulation in a Cd-Hyperaccumulator (Viola Baoshanensis) , 2010, International journal of phytoremediation.
[24] D. Craik,et al. Despite a conserved cystine knot motif, different cyclotides have different membrane binding modes. , 2009, Biophysical journal.
[25] Bing Yang,et al. A transcriptional profile of metallophyte Viola baoshanensis involved in general and species-specific cadmium-defense mechanisms. , 2009, Journal of plant physiology.
[26] T. Kusano,et al. A novel plant cysteine-rich peptide family conferring cadmium tolerance to yeast and plants , 2009, Plant signaling & behavior.
[27] D. Craik,et al. Identification of two suites of cyclotide precursor genes from metallophyte Viola baoshanensis: cDNA sequence variation, alternative RNA splicing and potential cyclotide diversity. , 2009, Gene.
[28] D. Craik,et al. Distribution and Evolution of Circular Miniproteins in Flowering Plants[W] , 2008, The Plant Cell Online.
[29] D. Craik,et al. Backbone cyclised peptides from plants show molluscicidal activity against the rice pest Pomacea canaliculata (golden apple snail). , 2008, Journal of agricultural and food chemistry.
[30] A. Arseniev,et al. Divalent cation coordination and mode of membrane interaction in cyclotides: NMR spatial structure of ternary complex Kalata B7/Mn2+/DPC micelle. , 2008, Journal of inorganic biochemistry.
[31] D. Craik,et al. Cyclotides: natural, circular plant peptides that possess significant activity against gastrointestinal nematode parasites of sheep. , 2008, Biochemistry.
[32] Marilyn A. Anderson,et al. Plant cyclotides disrupt epithelial cells in the midgut of lepidopteran larvae , 2008, Proceedings of the National Academy of Sciences.
[33] R. Mittler,et al. The zinc finger network of plants , 2008, Cellular and Molecular Life Sciences.
[34] Conan K. L. Wang,et al. CyBase: a database of cyclic protein sequences and structures, with applications in protein discovery and engineering , 2007, Nucleic Acids Res..
[35] D. Craik,et al. The Cyclotide Fingerprint in Oldenlandia affinis: Elucidation of Chemically Modified, Linear and Novel Macrocyclic Peptides , 2007, Chembiochem : a European journal of chemical biology.
[36] Marilyn A. Anderson,et al. Insecticidal plant cyclotides and related cystine knot toxins. , 2007, Toxicon : official journal of the International Society on Toxinology.
[37] P. Berthomieu,et al. A putative novel role for plant defensins: a defensin from the zinc hyper-accumulating plant, Arabidopsis halleri, confers zinc tolerance. , 2006, The Plant journal : for cell and molecular biology.
[38] Lin Fang,et al. WEGO: a web tool for plotting GO annotations , 2006, Nucleic Acids Res..
[39] D. Craik,et al. Discovery and characterization of a linear cyclotide from Viola odorata: implications for the processing of circular proteins. , 2006, Journal of molecular biology.
[40] L. Bohlin,et al. Key role of glutamic acid for the cytotoxic activity of the cyclotide cycloviolacin O2 , 2006, Cellular and Molecular Life Sciences CMLS.
[41] Jason P. Mulvenna,et al. CyBase: a database of cyclic protein sequence and structure , 2005, Nucleic Acids Res..
[42] H. Kolmar,et al. Trypsin inhibition by macrocyclic and open-chain variants of the squash inhibitor MCoTI-II , 2005, Biological chemistry.
[43] Michelle L Colgrave,et al. A Continent of Plant Defense Peptide Diversity: Cyclotides in Australian Hybanthus (Violaceae)w⃞ , 2005, The Plant Cell Online.
[44] K. Gustafson,et al. Isolation and Characterization of Novel Cyclotides from Viola hederaceae , 2005, Journal of Biological Chemistry.
[45] Clement Waine,et al. Isolation, solution structure, and insecticidal activity of kalata B2, a circular protein with a twist: do Möbius strips exist in nature? , 2005, Biochemistry.
[46] D. Craik,et al. Discovery, structure and biological activities of cyclotides. , 2004, Advanced drug delivery reviews.
[47] K. Gustafson,et al. The role of the cyclic peptide backbone in the anti‐HIV activity of the cyclotide kalata B1 , 2004, FEBS letters.
[48] L. Bohlin,et al. Reversible antifouling effect of the cyclotide cycloviolacin O2 against barnacles. , 2004, Journal of natural products.
[49] D. Craik,et al. Tissue-Specific Expression of Head-to-Tail Cyclized Miniproteins in Violaceae and Structure Determination of the Root Cyclotide Viola hederacea root cyclotide1 , 2004, The Plant Cell Online.
[50] D. Petering,et al. Zn-, Cd-, and Pb-transcription factor IIIA: properties, DNA binding, and comparison with TFIIIA-finger 3 metal complexes. , 2004, Journal of inorganic biochemistry.
[51] L. Bohlin,et al. Cytotoxic cyclotides from Viola tricolor. , 2004, Journal of natural products.
[52] Wei Liu,et al. Viola baoshanensis, a plant that hyperaccumulates cadmium , 2004 .
[53] D. Craik,et al. Linearization of a naturally occurring circular protein maintains structure but eliminates hemolytic activity. , 2003, Biochemistry.
[54] A. Backlund,et al. Cyclotides: a novel type of cytotoxic agents. , 2002, Molecular cancer therapeutics.
[55] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[56] Clement Waine,et al. Biosynthesis and insecticidal properties of plant cyclotides: The cyclic knotted proteins from Oldenlandia affinis , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[57] A. Hartwig. Zinc finger proteins as potential targets for toxic metal ions: differential effects on structure and function. , 2001, Antioxidants & redox signaling.
[58] L. Pannell,et al. A novel anti-HIV macrocyclic peptide from Palicourea condensata. , 2001, Journal of natural products.
[59] L. Pannell,et al. Cycloviolins A-D, anti-HIV macrocyclic peptides from Leonia cymosa. , 2000, The Journal of organic chemistry.
[60] D. Craik,et al. Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif. , 1999, Journal of molecular biology.
[61] J. Tam,et al. An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[62] L. Hemmingsen,et al. The protein conformation of Cd-substituted horse liver alcohol dehydrogenase and its metal-site coordination geometry in binary and ternary inhibitor complexes. , 1996, European journal of biochemistry.
[63] N V Raikhel,et al. Small cysteine-rich antifungal proteins from radish: their role in host defense. , 1995, The Plant cell.
[64] L. Pannell,et al. Circulins A and B. Novel human immunodeficiency virus (HIV)-inhibitory macrocyclic peptides from the tropical tree Chassalia parvifolia. , 1994 .
[65] T. Ng,et al. Lipid‐transfer proteins , 2012, Biopolymers.
[66] D. Craik,et al. Cyclotides are a component of the innate defense of Oldenlandia affinis. , 2010, Biopolymers.
[67] T. Kusano,et al. Novel cysteine-rich peptides from Digitaria ciliaris and Oryza sativa enhance tolerance to cadmium by limiting its cellular accumulation. , 2009, Plant & cell physiology.
[68] K. Gustafson,et al. Anti-HIV cyclotides from the Chinese medicinal herb Viola yedoensis. , 2008, Journal of natural products.
[69] C. Cobbett,et al. Phytochelatins and metallothioneins: roles in heavy metal detoxification and homeostasis. , 2002, Annual review of plant biology.