Group Additivity for Aqueous Phase Thermochemical Properties of Alcohols on Pt(111)

Despite progress in theoretical tools, the influence of solvation in heterogeneous catalysis remains poorly understood and predicted due to the large computational burden. In this work, we show that the inclusion of the solvation by water using a continuum model thermodynamically inhibits the O–H bond scissions involved in the ethanol aqueous phase reforming reaction over Pt(111), while it tends to favor the C–H, C–C, and C–O scissions. Then, we present a novel group additivity scheme for the free energy of adsorbates at the Pt/water interface that is able to capture this solvent effect. The mean absolute error (MeanAE) for the Gibbs free energy of formation is 3.3 kcal/mol over the investigated set of 200 species at the interface and the MeanAE for the 151 reaction free energies of ethanol aqueous phase reforming is 2.8 kcal/mol. Regarding the effect of solvation, our scheme is able to predict it with a MeanAE of about 1 kcal/mol. Together, the scheme promises to be accurate enough for narrowing down the...

[1]  P. Hu,et al.  Density functional theory study on the activation of molecular oxygen on a stepped gold surface in an aqueous environment: a new approach for simulating reactions in solution. , 2014, Physical chemistry chemical physics : PCCP.

[2]  H. Ågren,et al.  Molecular Dynamics Simulations Using a Capacitance–Polarizability Force Field , 2015 .

[3]  Kendra Letchworth-Weaver,et al.  Implicit solvation model for density-functional study of nanocrystal surfaces and reaction pathways. , 2013, The Journal of chemical physics.

[4]  David C. Cantu,et al.  Heterogeneous catalysis in complex, condensed reaction media , 2017 .

[5]  Osman G. Mamun,et al.  Solvent effects in the liquid phase hydrodeoxygenation of methyl propionate over a Pd(1 1 1) catalyst model , 2016 .

[6]  Jörg Behler,et al.  Neural network molecular dynamics simulations of solid-liquid interfaces: water at low-index copper surfaces. , 2016, Physical chemistry chemical physics : PCCP.

[7]  Gilbert F. Froment,et al.  Alkylation on Solid Acids. Part 2. Single-Event Kinetic Modeling , 2006 .

[8]  Prodromos Daoutidis,et al.  Language-oriented rule-based reaction network generation and analysis: Applications of RING , 2012, Comput. Chem. Eng..

[9]  Aage Fredenslund,et al.  Group‐contribution estimation of activity coefficients in nonideal liquid mixtures , 1975 .

[10]  D. Golden,et al.  Predictive scheme for thermochemical properties of polycyclic aromatic hydrocarbons , 1977 .

[11]  A. Gross,et al.  The structure of water at a Pt(111) electrode and the potential of zero charge studied from first principles. , 2016, The Journal of chemical physics.

[12]  Prodromos Daoutidis,et al.  Language-oriented rule-based reaction network generation and analysis: Description of RING , 2012, Comput. Chem. Eng..

[13]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[14]  Tom Ziegler,et al.  A Density Functional Study of SN2 Substitution at Square-Planar Platinum(II) Complexes , 2002 .

[15]  M. Neurock,et al.  Theoretical insights into the structure and reactivity of the aqueous/metal interface , 2005 .

[16]  George Jackson,et al.  New reference equation of state for associating liquids , 1990 .

[17]  George Jackson,et al.  A group contribution method for associating chain molecules based on the statistical associating fluid theory (SAFT-gamma). , 2007, The Journal of chemical physics.

[18]  Arieh Warshel,et al.  Exploring the Dependence of QM/MM Calculations of Enzyme Catalysis on the Size of the QM Region , 2016, The journal of physical chemistry. B.

[19]  D. Golden,et al.  Revised group additivity parameters for the enthalpies of formation of oxygen-containing organic compounds , 1973 .

[20]  Andreas Heyden,et al.  New Implicit Solvation Scheme for Solid Surfaces , 2012 .

[21]  M. Neurock,et al.  First-principles study of the role of solvent in the dissociation of water over a Pt-Ru alloy , 2003 .

[22]  D. H. Wertz,et al.  Relationship between the gas-phase entropies of molecules and their entropies of solvation in water and 1-octanol , 1980 .

[23]  Michiel Sprik,et al.  Free energy from constrained molecular dynamics , 1998 .

[24]  A. Wiȩckowski,et al.  Mechanisms of methanol decomposition on platinum: A combined experimental and ab initio approach. , 2005, The journal of physical chemistry. B.

[25]  Andreas Heyden,et al.  Solvent effects on the hydrodeoxygenation of propanoic acid over Pd(111) model surfaces , 2014 .

[26]  Matthew Neurock,et al.  Reactivity of the Gold/Water Interface During Selective Oxidation Catalysis , 2010, Science.

[27]  Gilbert F. Froment,et al.  Kinetic modeling of the thermal cracking of hydrocarbons. 2. Calculation of activation energies , 1988 .

[28]  G. Huber,et al.  Raney Ni-Sn Catalyst for H2 Production from Biomass-Derived Hydrocarbons , 2003, Science.

[29]  William A. Goddard,et al.  Thermochemistry for Hydrocarbon Intermediates Chemisorbed on Metal Surfaces: CH_(n-m)(CH_3)_m with n = 1, 2, 3 and m ≤ n on Pt, Ir, Os, Pd, Rh, and Ru , 2000 .

[30]  J. Prausnitz,et al.  Statistical thermodynamics of liquid mixtures: A new expression for the excess Gibbs energy of partly or completely miscible systems , 1975 .

[31]  P. Sautet,et al.  Impacts of electrode potentials and solvents on the electroreduction of CO2: a comparison of theoretical approaches. , 2015, Physical chemistry chemical physics : PCCP.

[32]  D. Vlachos,et al.  Density Functional Theory-Derived Group Additivity and Linear Scaling Methods for Prediction of Oxygenate Stability on Metal Catalysts: Adsorption of Open-Ring Alcohol and Polyol Dehydrogenation Intermediates on Pt-Based Metals , 2010 .

[33]  J. Riveros,et al.  The Cluster−Continuum Model for the Calculation of the Solvation Free Energy of Ionic Species , 2001 .

[34]  N. López,et al.  Solvation Effects on Methanol Decomposition on Pd(111), Pt(111), and Ru(0001) , 2017 .

[35]  S. Benson,et al.  Heat capacities of liquid hydrocarbons. Estimation of heat capacities at constant pressure as a temperature function, using additivity rules , 1977 .

[36]  Yong Wang,et al.  Highly selective hydrogenation of phenol and derivatives over a Pd@carbon nitride catalyst in aqueous media. , 2011, Journal of the American Chemical Society.

[37]  G. Kresse,et al.  From ultrasoft pseudopotentials to the projector augmented-wave method , 1999 .

[38]  Tom Ziegler,et al.  Calculation of Free Energy Profiles for Elementary Bimolecular Reactions by ab Initio Molecular Dynamics: Sampling Methods and Thermostat Considerations , 2004 .

[39]  Blöchl,et al.  Projector augmented-wave method. , 1994, Physical review. B, Condensed matter.

[40]  Osman G. Mamun,et al.  Solvation Effects in the Hydrodeoxygenation of Propanoic Acid over a Model Pd(211) Catalyst , 2016 .

[41]  Andreas Heyden,et al.  Hybrid Quantum Mechanics/Molecular Mechanics Solvation Scheme for Computing Free Energies of Reactions at Metal-Water Interfaces. , 2014, Journal of chemical theory and computation.

[42]  G. Kresse,et al.  Ab initio molecular dynamics for liquid metals. , 1993 .

[43]  S. Benson Thermochemistry and kinetics of sulfur-containing molecules and radicals , 1978 .

[44]  Chen Zhao,et al.  One-step conversion of cellobiose to C6-alcohols using a ruthenium nanocluster catalyst. , 2006, Journal of the American Chemical Society.

[45]  W. Goddard,et al.  Full atomistic reaction mechanism with kinetics for CO reduction on Cu(100) from ab initio molecular dynamics free-energy calculations at 298 K , 2017, Proceedings of the National Academy of Sciences.

[46]  Geun Ho Gu,et al.  Group Additivity for Thermochemical Property Estimation of Lignin Monomers on Pt(111) , 2016 .

[47]  W. Kabsch A solution for the best rotation to relate two sets of vectors , 1976 .

[48]  Dionisios G. Vlachos,et al.  Building large microkinetic models with first-principles׳ accuracy at reduced computational cost , 2015 .

[49]  D. Vlachos,et al.  Group Additivity for Estimating Thermochemical Properties of Furanic Compounds on Pd(111) , 2014 .

[50]  G. Ciccotti,et al.  Constrained reaction coordinate dynamics for the simulation of rare events , 1989 .

[51]  L. Pratt,et al.  Absolute hydration free energies of ions, ion–water clusters, and quasichemical theory , 2003, physics/0303062.

[52]  N. Yan,et al.  Aqueous-phase Fischer-Tropsch synthesis with a ruthenium nanocluster catalyst. , 2008, Angewandte Chemie.

[53]  Rafiqul Gani,et al.  Estimation of the acentric factor and the liquid molar volume at 298 K using a new group contribution method , 1995 .

[54]  Richard A. Volz,et al.  Estimating 3-D location parameters using dual number quaternions , 1991, CVGIP Image Underst..

[55]  Zhipan Liu,et al.  Formic Acid Oxidation at Pt/H2O Interface from Periodic DFT Calculations Integrated with a Continuum Solvation Model , 2009 .

[56]  M. Neurock,et al.  A Periodic Density Functional Theory Analysis of the Effect of Water Molecules on Deprotonation of Acetic Acid over Pd(111) , 2001 .

[57]  D. Vlachos,et al.  Group Additivity and Modified Linear Scaling Relations for Estimating Surface Thermochemistry on Transition Metal Surfaces: Application to Furanics , 2015 .

[58]  Richard G. Hennig,et al.  Accuracy of exchange-correlation functionals and effect of solvation on the surface energy of copper , 2013 .

[59]  Donghai Mei,et al.  First-principles study of phenol hydrogenation on Pt and Ni catalysts in aqueous phase. , 2014, Journal of the American Chemical Society.

[60]  J. Gmehling,et al.  Extension and revision of the group contribution method GCVOL for the prediction of pure compound liquid densities , 2003 .

[61]  N. López,et al.  Multigrid-Based Methodology for Implicit Solvation Models in Periodic DFT. , 2016, Journal of chemical theory and computation.

[62]  Arieh Ben-Naim,et al.  Statistical Thermodynamics for Chemists and Biochemists , 1992, Springer US.

[63]  D. T. Wu Prediction of viscosities of liquid mixtures by a group contribution method , 1986 .

[64]  J. Dumesic,et al.  Hydrogen from catalytic reforming of biomass-derived hydrocarbons in liquid water , 2002, Nature.

[65]  C. Corminboeuf,et al.  A density dependent dispersion correction. , 2011, Chimia.

[66]  Bernard Delmon,et al.  Influence of Water in the Deactivation of a Sulfided Nimo Gamma-al2o3 Catalyst During Hydrodeoxygenation , 1994 .

[67]  D. Vlachos,et al.  Adsorption of Acid, Ester, and Ether Functional Groups on Pt: Fast Prediction of Thermochemical Properties of Adsorbed Oxygenates via DFT-Based Group Additivity Methods , 2012 .

[68]  Theodore Dickerson,et al.  Catalytic Fast Pyrolysis: A Review , 2013 .

[69]  Philippe Sautet,et al.  Towards more accurate prediction of activation energies for polyalcohol dehydrogenation on transition metal catalysts in water , 2016 .

[70]  N. López,et al.  Diversity at the Water–Metal Interface: Metal, Water Thickness, and Confinement Effects , 2016, ACS central science.

[71]  J. W. Halley,et al.  Molecular dynamics, density functional theory of the metal–electrolyte interface , 1995 .

[72]  Ye Xu,et al.  High-throughput screening of monometallic catalysts for aqueous-phase hydrogenation of biomass-derived oxygenates , 2013 .

[73]  V. S. Bryantsev,et al.  Calculation of solvation free energies of charged solutes using mixed cluster/continuum models. , 2008, The journal of physical chemistry. B.

[74]  Eckhard Spohr,et al.  Computer simulation of the water/platinum interface , 1989 .

[75]  C. Corminboeuf,et al.  A generalized-gradient approximation exchange hole model for dispersion coefficients. , 2011, The Journal of chemical physics.

[76]  C. Corminboeuf,et al.  Comprehensive Benchmarking of a Density-Dependent Dispersion Correction. , 2011, Journal of chemical theory and computation.

[77]  Belinda S. Akpa,et al.  Solvent effects in the hydrogenation of 2-butanone , 2012 .

[78]  P. Sautet,et al.  Key Role of Anionic Doping for H2 Production from Formic Acid on Pd(111) , 2017 .

[79]  Marcella Iannuzzi,et al.  Simulation of Adsorption Processes at Metallic Interfaces: An Image Charge Augmented QM/MM Approach. , 2013, Journal of chemical theory and computation.

[80]  M. Stamatakis,et al.  A review of multiscale modeling of metal-catalyzed reactions: Mechanism development for complexity and emergent behavior , 2011 .

[81]  David T. Limmer,et al.  Hydration of metal surfaces can be dynamically heterogeneous and hydrophobic , 2013, Proceedings of the National Academy of Sciences.

[82]  S. Benson,et al.  Additivity Rules for the Estimation of Molecular Properties. Thermodynamic Properties , 1958 .

[83]  Jonathan E. Sutton,et al.  Combined DFT, Microkinetic, and Experimental Study of Ethanol Steam Reforming on Pt , 2013 .

[84]  R. Rousseau,et al.  Structure, dynamics and stability of water/scCO2/mineral interfaces from ab initio molecular dynamics simulations , 2015, Scientific Reports.

[85]  R. Gani,et al.  New group contribution method for estimating properties of pure compounds , 1994 .

[86]  Ron Kohavi,et al.  A Study of Cross-Validation and Bootstrap for Accuracy Estimation and Model Selection , 1995, IJCAI.

[87]  Richard F. W. Bader and,et al.  Properties of Atoms in Molecules: Group Additivity , 2000 .

[88]  P. Sautet,et al.  Role of water in metal catalyst performance for ketone hydrogenation: a joint experimental and theoretical study on levulinic acid conversion into gamma-valerolactone. , 2014, Chemical communications.

[89]  Kurt Kremer,et al.  Dual-scale modeling of benzene adsorption onto Ni(111) and Au(111) surfaces in explicit water. , 2005, Chemphyschem : a European journal of chemical physics and physical chemistry.

[90]  P. Sautet,et al.  Solvation free energies for periodic surfaces: comparison of implicit and explicit solvation models. , 2016, Physical chemistry chemical physics : PCCP.

[91]  Gilbert F. Froment,et al.  Kinetic modeling of the thermal cracking of hydrocarbons. 1. Calculation of frequency factors , 1988 .

[92]  Yoshua Bengio,et al.  No Unbiased Estimator of the Variance of K-Fold Cross-Validation , 2003, J. Mach. Learn. Res..

[93]  Jens Carlsson,et al.  Absolute and relative entropies from computer simulation with applications to ligand binding. , 2005, The journal of physical chemistry. B.