Adaptive local basis set for Kohn-Sham density functional theory in a discontinuous Galerkin framework II: Force, vibration, and molecular dynamics calculations

Recently, we have proposed the adaptive local basis set for electronic structure calculations based on Kohn-Sham density functional theory in a pseudopotential framework. The adaptive local basis set is efficient and systematically improvable for total energy calculations. In this paper, we present the calculation of atomic forces, which can be used for a range of applications such as geometry optimization and molecular dynamics simulation. We demonstrate that, under mild assumptions, the computation of atomic forces can scale nearly linearly with the number of atoms in the system using the adaptive local basis set. We quantify the accuracy of the Hellmann-Feynman forces for a range of physical systems, benchmarked against converged planewave calculations, and find that the adaptive local basis set is efficient for both force and energy calculations, requiring at most a few tens of basis functions per atom to attain accuracy required in practice. Since the adaptive local basis set has implicit dependence on atomic positions, Pulay forces are in general nonzero. However, we find that the Pulay force is numerically small and systematically decreasing with increasing basis completeness, so that the Hellmann-Feynman force is sufficient for basis sizes of a few tens of basis functions per atom. We verify the accuracy of the computed forces in static calculations of quasi-1D and 3D disordered Si systems, vibration calculation of a quasi-1D Si system, and molecular dynamics calculations of H$_2$ and liquid Al-Si alloy systems, where we find excellent agreement with independent benchmark results in literature.

[1]  Matthias Scheffler,et al.  Ab initio molecular simulations with numeric atom-centered orbitals , 2009, Comput. Phys. Commun..

[2]  Douglas N. Arnold,et al.  Unified Analysis of Discontinuous Galerkin Methods for Elliptic Problems , 2001, SIAM J. Numer. Anal..

[3]  S. Nosé A unified formulation of the constant temperature molecular dynamics methods , 1984 .

[4]  Aihui Zhou,et al.  Adaptive Finite Element Approximations for Kohn-Sham Models , 2013, Multiscale Model. Simul..

[5]  Gang Bao,et al.  Numerical Solution of the Kohn-Sham Equation by Finite Element Methods with an Adaptive Mesh Redistribution Technique , 2013, J. Sci. Comput..

[6]  Taisuke Ozaki,et al.  Variationally optimized atomic orbitals for large-scale electronic structures , 2003 .

[7]  T. Arias,et al.  Iterative minimization techniques for ab initio total energy calculations: molecular dynamics and co , 1992 .

[8]  Chao Yang,et al.  Accelerating atomic orbital-based electronic structure calculation via pole expansion and selected inversion , 2012, Journal of physics. Condensed matter : an Institute of Physics journal.

[9]  E Weinan,et al.  Optimized local basis function for Kohn-Sham density functional theory , 2011 .

[10]  E Weinan,et al.  Adaptive local basis set for Kohn-Sham density functional theory in a discontinuous Galerkin framework I: Total energy calculation , 2011, J. Comput. Phys..

[11]  R. Martin,et al.  Electronic Structure: Basic Theory and Practical Methods , 2004 .

[12]  Stefan Goedecker,et al.  ABINIT: First-principles approach to material and nanosystem properties , 2009, Comput. Phys. Commun..

[13]  Hideaki Fujitani,et al.  Transferable atomic-type orbital basis sets for solids , 2000 .

[14]  Lexing Ying,et al.  Element orbitals for Kohn-Sham density functional theory , 2012, 1201.5698.

[15]  P. Pulay,et al.  Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules. I. Theory , 2002 .

[16]  Leonard Kleinman,et al.  Efficacious Form for Model Pseudopotentials , 1982 .

[17]  Hoover,et al.  Canonical dynamics: Equilibrium phase-space distributions. , 1985, Physical review. A, General physics.

[18]  Chao Yang,et al.  SIESTA-PEXSI: massively parallel method for efficient and accurate ab initio materials simulation without matrix diagonalization , 2014, Journal of physics. Condensed matter : an Institute of Physics journal.

[19]  S. Goedecker Linear scaling electronic structure methods , 1999 .

[20]  John Ziman,et al.  A theory of the electrical properties of liquid metals , 1965 .

[21]  E. Weinan,et al.  Fast algorithm for extracting the diagonal of the inverse matrix with application to the electronic structure analysis of metallic systems , 2009 .

[22]  C. Y. Fong,et al.  Real-space local polynomial basis for solid-state electronic-structure calculations: A finite-element approach , 1999, cond-mat/9903313.

[23]  D. Sánchez-Portal,et al.  Numerical atomic orbitals for linear-scaling calculations , 2001, cond-mat/0104170.

[24]  W. Kohn,et al.  Self-Consistent Equations Including Exchange and Correlation Effects , 1965 .

[25]  Tiao Lu,et al.  Linear Scaling Discontinuous Galerkin Density Matrix Minimization Method with Local Orbital Enriched Finite Element Basis: 1-D Lattice Model System , 2013 .

[26]  Patrick R. Briddon,et al.  Highly efficient method for Kohn-Sham density functional calculations of 500–10 000 atom systems , 2009 .

[27]  R. Bader,et al.  Forces in molecules. , 2007, Faraday discussions.

[28]  D. Sánchez-Portal,et al.  The SIESTA method for ab initio order-N materials simulation , 2001, cond-mat/0111138.

[29]  D. Bowler,et al.  O(N) methods in electronic structure calculations. , 2011, Reports on progress in physics. Physical Society.

[30]  B. Delley,et al.  Efficient and accurate expansion methods for molecules in local density models , 1982 .

[31]  A. Zunger,et al.  Self-interaction correction to density-functional approximations for many-electron systems , 1981 .

[32]  H. Eschrig Optimized Lcao Method and the Electronic Structure of Extended Systems , 1989 .

[33]  Helmut Eschrig,et al.  FULL-POTENTIAL NONORTHOGONAL LOCAL-ORBITAL MINIMUM-BASIS BAND-STRUCTURE SCHEME , 1999 .

[34]  Y. Saad,et al.  Finite-difference-pseudopotential method: Electronic structure calculations without a basis. , 1994, Physical review letters.

[35]  Chris-Kriton Skylaris,et al.  Introducing ONETEP: linear-scaling density functional simulations on parallel computers. , 2005, The Journal of chemical physics.

[36]  Chao Yang,et al.  DGDFT: A massively parallel method for large scale density functional theory calculations. , 2015, The Journal of chemical physics.

[37]  Chao Yang,et al.  Chebyshev polynomial filtered subspace iteration in the discontinuous Galerkin method for large-scale electronic structure calculations. , 2016, The Journal of chemical physics.

[38]  Chao Yang,et al.  A posteriori error estimator for adaptive local basis functions to solve Kohn-Sham density functional theory , 2014, 1401.0920.

[39]  D. Arnold An Interior Penalty Finite Element Method with Discontinuous Elements , 1982 .

[40]  J. Pask,et al.  Finite element methods in ab initio electronic structure calculations , 2005 .

[41]  Peter Pulay,et al.  Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules , 1969 .

[42]  P. Hohenberg,et al.  Inhomogeneous Electron Gas , 1964 .

[43]  M. Tsukada,et al.  Electronic-structure calculations based on the finite-element method. , 1995, Physical review. B, Condensed matter.

[44]  Stefan Goedecker,et al.  Daubechies wavelets for linear scaling density functional theory. , 2014, The Journal of chemical physics.

[45]  Chao Yang,et al.  Edge reconstruction in armchair phosphorene nanoribbons revealed by discontinuous Galerkin density functional theory. , 2015, Physical chemistry chemical physics : PCCP.

[46]  P A Sterne,et al.  Real-space formulation of the electrostatic potential and total energy of solids , 2005 .

[47]  S. Goedecker,et al.  Relativistic separable dual-space Gaussian pseudopotentials from H to Rn , 1998, cond-mat/9803286.

[48]  James R. Chelikowsky,et al.  Ab initio molecular dynamics simulations of molten AlSi alloys , 2011 .

[49]  D. Ellis,et al.  An efficient numerical multicenter basis set for molecular orbital calculations: Application to FeCl4 , 1973 .

[50]  B. Alder,et al.  THE GROUND STATE OF THE ELECTRON GAS BY A STOCHASTIC METHOD , 2010 .

[51]  I. Babuska,et al.  Nonconforming Elements in the Finite Element Method with Penalty , 1973 .

[52]  Chi-Wang Shu,et al.  Discontinuous Galerkin Methods: Theory, Computation and Applications , 2011 .