Adaptive local basis set for Kohn-Sham density functional theory in a discontinuous Galerkin framework II: Force, vibration, and molecular dynamics calculations
暂无分享,去创建一个
Chao Yang | Wei Hu | Lin Lin | John E. Pask | Gaigong Zhang | Chao Yang | Lin Lin | Wei Hu | J. Pask | G. Zhang
[1] Matthias Scheffler,et al. Ab initio molecular simulations with numeric atom-centered orbitals , 2009, Comput. Phys. Commun..
[2] Douglas N. Arnold,et al. Unified Analysis of Discontinuous Galerkin Methods for Elliptic Problems , 2001, SIAM J. Numer. Anal..
[3] S. Nosé. A unified formulation of the constant temperature molecular dynamics methods , 1984 .
[4] Aihui Zhou,et al. Adaptive Finite Element Approximations for Kohn-Sham Models , 2013, Multiscale Model. Simul..
[5] Gang Bao,et al. Numerical Solution of the Kohn-Sham Equation by Finite Element Methods with an Adaptive Mesh Redistribution Technique , 2013, J. Sci. Comput..
[6] Taisuke Ozaki,et al. Variationally optimized atomic orbitals for large-scale electronic structures , 2003 .
[7] T. Arias,et al. Iterative minimization techniques for ab initio total energy calculations: molecular dynamics and co , 1992 .
[8] Chao Yang,et al. Accelerating atomic orbital-based electronic structure calculation via pole expansion and selected inversion , 2012, Journal of physics. Condensed matter : an Institute of Physics journal.
[9] E Weinan,et al. Optimized local basis function for Kohn-Sham density functional theory , 2011 .
[10] E Weinan,et al. Adaptive local basis set for Kohn-Sham density functional theory in a discontinuous Galerkin framework I: Total energy calculation , 2011, J. Comput. Phys..
[11] R. Martin,et al. Electronic Structure: Basic Theory and Practical Methods , 2004 .
[12] Stefan Goedecker,et al. ABINIT: First-principles approach to material and nanosystem properties , 2009, Comput. Phys. Commun..
[13] Hideaki Fujitani,et al. Transferable atomic-type orbital basis sets for solids , 2000 .
[14] Lexing Ying,et al. Element orbitals for Kohn-Sham density functional theory , 2012, 1201.5698.
[15] P. Pulay,et al. Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules. I. Theory , 2002 .
[16] Leonard Kleinman,et al. Efficacious Form for Model Pseudopotentials , 1982 .
[17] Hoover,et al. Canonical dynamics: Equilibrium phase-space distributions. , 1985, Physical review. A, General physics.
[18] Chao Yang,et al. SIESTA-PEXSI: massively parallel method for efficient and accurate ab initio materials simulation without matrix diagonalization , 2014, Journal of physics. Condensed matter : an Institute of Physics journal.
[19] S. Goedecker. Linear scaling electronic structure methods , 1999 .
[20] John Ziman,et al. A theory of the electrical properties of liquid metals , 1965 .
[21] E. Weinan,et al. Fast algorithm for extracting the diagonal of the inverse matrix with application to the electronic structure analysis of metallic systems , 2009 .
[22] C. Y. Fong,et al. Real-space local polynomial basis for solid-state electronic-structure calculations: A finite-element approach , 1999, cond-mat/9903313.
[23] D. Sánchez-Portal,et al. Numerical atomic orbitals for linear-scaling calculations , 2001, cond-mat/0104170.
[24] W. Kohn,et al. Self-Consistent Equations Including Exchange and Correlation Effects , 1965 .
[25] Tiao Lu,et al. Linear Scaling Discontinuous Galerkin Density Matrix Minimization Method with Local Orbital Enriched Finite Element Basis: 1-D Lattice Model System , 2013 .
[26] Patrick R. Briddon,et al. Highly efficient method for Kohn-Sham density functional calculations of 500–10 000 atom systems , 2009 .
[27] R. Bader,et al. Forces in molecules. , 2007, Faraday discussions.
[28] D. Sánchez-Portal,et al. The SIESTA method for ab initio order-N materials simulation , 2001, cond-mat/0111138.
[29] D. Bowler,et al. O(N) methods in electronic structure calculations. , 2011, Reports on progress in physics. Physical Society.
[30] B. Delley,et al. Efficient and accurate expansion methods for molecules in local density models , 1982 .
[31] A. Zunger,et al. Self-interaction correction to density-functional approximations for many-electron systems , 1981 .
[32] H. Eschrig. Optimized Lcao Method and the Electronic Structure of Extended Systems , 1989 .
[33] Helmut Eschrig,et al. FULL-POTENTIAL NONORTHOGONAL LOCAL-ORBITAL MINIMUM-BASIS BAND-STRUCTURE SCHEME , 1999 .
[34] Y. Saad,et al. Finite-difference-pseudopotential method: Electronic structure calculations without a basis. , 1994, Physical review letters.
[35] Chris-Kriton Skylaris,et al. Introducing ONETEP: linear-scaling density functional simulations on parallel computers. , 2005, The Journal of chemical physics.
[36] Chao Yang,et al. DGDFT: A massively parallel method for large scale density functional theory calculations. , 2015, The Journal of chemical physics.
[37] Chao Yang,et al. Chebyshev polynomial filtered subspace iteration in the discontinuous Galerkin method for large-scale electronic structure calculations. , 2016, The Journal of chemical physics.
[38] Chao Yang,et al. A posteriori error estimator for adaptive local basis functions to solve Kohn-Sham density functional theory , 2014, 1401.0920.
[39] D. Arnold. An Interior Penalty Finite Element Method with Discontinuous Elements , 1982 .
[40] J. Pask,et al. Finite element methods in ab initio electronic structure calculations , 2005 .
[41] Peter Pulay,et al. Ab initio calculation of force constants and equilibrium geometries in polyatomic molecules , 1969 .
[42] P. Hohenberg,et al. Inhomogeneous Electron Gas , 1964 .
[43] M. Tsukada,et al. Electronic-structure calculations based on the finite-element method. , 1995, Physical review. B, Condensed matter.
[44] Stefan Goedecker,et al. Daubechies wavelets for linear scaling density functional theory. , 2014, The Journal of chemical physics.
[45] Chao Yang,et al. Edge reconstruction in armchair phosphorene nanoribbons revealed by discontinuous Galerkin density functional theory. , 2015, Physical chemistry chemical physics : PCCP.
[46] P A Sterne,et al. Real-space formulation of the electrostatic potential and total energy of solids , 2005 .
[47] S. Goedecker,et al. Relativistic separable dual-space Gaussian pseudopotentials from H to Rn , 1998, cond-mat/9803286.
[48] James R. Chelikowsky,et al. Ab initio molecular dynamics simulations of molten AlSi alloys , 2011 .
[49] D. Ellis,et al. An efficient numerical multicenter basis set for molecular orbital calculations: Application to FeCl4 , 1973 .
[50] B. Alder,et al. THE GROUND STATE OF THE ELECTRON GAS BY A STOCHASTIC METHOD , 2010 .
[51] I. Babuska,et al. Nonconforming Elements in the Finite Element Method with Penalty , 1973 .
[52] Chi-Wang Shu,et al. Discontinuous Galerkin Methods: Theory, Computation and Applications , 2011 .