A nested bistable module within a negative feedback loop ensures different types of oscillations in signaling systems
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[1] Qiong Yang,et al. In vitro cell cycle oscillations exhibit a robust and hysteretic response to changes in cytoplasmic density , 2021, Proceedings of the National Academy of Sciences.
[2] J. Ferrell. Systems Biology of Cell Signaling , 2021 .
[3] Rodolphe Sepulchre,et al. Neuromorphic Control: Designing Multiscale Mixed-Feedback Systems , 2020, IEEE Control Systems.
[4] L. Gelens,et al. Synchronizing an oscillatory medium: The speed of pacemaker-generated waves , 2020 .
[5] Alejandra C. Ventura,et al. Robustness in spatially driven bistability in signaling systems , 2020, Scientific Reports.
[6] U. Alon. An introduction to systems biology : design principles of biological circuits , 2019 .
[7] H. G. Rotstein,et al. Inhibition-based relaxation oscillations emerge in resonator networks , 2019, Mathematical Modelling of Natural Phenomena.
[8] Thapanar Suwanmajo,et al. Exploring the intrinsic behaviour of multisite phosphorylation systems as part of signalling pathways , 2018, Journal of The Royal Society Interface.
[9] James Briscoe,et al. Combining a Toggle Switch and a Repressilator within the AC-DC Circuit Generates Distinct Dynamical Behaviors , 2018, Cell systems.
[10] Xiao-Peng Zhang,et al. Modulation of dynamic modes by interplay between positive and negative feedback loops in gene regulatory networks. , 2018, Physical review. E.
[11] Carlo Baldassi,et al. RNAs competing for microRNAs mutually influence their fluctuations in a highly non-linear microRNA-dependent manner in single cells , 2017, Genome Biology.
[12] William S. Hlavacek,et al. Relaxation oscillations and hierarchy of feedbacks in MAPK signaling , 2017, Scientific Reports.
[13] H. Herzel,et al. Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells , 2016, Scientific Reports.
[14] Antonio Z. Politi,et al. Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations , 2016, PLoS Comput. Biol..
[15] J Krishnan,et al. Bridging the gap between modules in isolation and as part of networks: A systems framework for elucidating interaction and regulation of signalling modules. , 2016, The Journal of chemical physics.
[16] Michael Hucka,et al. MOCCASIN: converting MATLAB ODE models to SBML , 2016, Bioinform..
[17] Matthias Durr,et al. Methods In Neuronal Modeling From Ions To Networks , 2016 .
[18] Thawfeek M. Varusai,et al. Protein-protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose-responses. , 2015, Molecular bioSystems.
[19] R. Karmakar. Two different modes of oscillation in a gene transcription regulatory network with interlinked positive and negative feedback loops , 2015, 1509.03718.
[20] Boris N. Kholodenko,et al. DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks , 2015, Scientific Reports.
[21] Elisenda Feliu,et al. Finding the positive feedback loops underlying multi-stationarity , 2014, BMC Systems Biology.
[22] Thawfeek M. Varusai,et al. Ubiquitin chain specific auto‐ubiquitination triggers sustained oscillation, bistable switches and excitable firing , 2014, IET systems biology.
[23] J. Ferrell,et al. Ultrasensitivity part II: multisite phosphorylation, stoichiometric inhibitors, and positive feedback. , 2014, Trends in biochemical sciences.
[24] H. Herzel,et al. Positive Feedback Promotes Oscillations in Negative Feedback Loops , 2014, PLoS ONE.
[25] Julie A. Theriot,et al. Changes in Oscillatory Dynamics in the Cell Cycle of Early Xenopus laevis Embryos , 2014, PLoS biology.
[26] A. Ventura,et al. Intrinsic Feedbacks in MAPK Signaling Cascades Lead to Bistability and Oscillations , 2013, Acta biotheoretica.
[27] Ping Liu,et al. Substrate-dependent control of ERK phosphorylation can lead to oscillations. , 2011, Biophysical journal.
[28] Boris N. Kholodenko,et al. Switches, Excitable Responses and Oscillations in the Ring1B/Bmi1 Ubiquitination System , 2011, PLoS Comput. Biol..
[29] Eduardo Sontag,et al. Load-Induced Modulation of Signal Transduction Networks , 2011, Science Signaling.
[30] Alejandra C. Ventura,et al. Kinase inhibitors can produce off-target effects and activate linked pathways by retroactivity , 2011, BMC Systems Biology.
[31] Elisenda Feliu,et al. Enzyme-sharing as a cause of multi-stationarity in signalling systems , 2011, Journal of The Royal Society Interface.
[32] Martin Fussenegger,et al. A synthetic low-frequency mammalian oscillator , 2010, Nucleic acids research.
[33] K. Kaneko,et al. The combination of positive and negative feedback loops confers exquisite flexibility to biochemical switches , 2009, Physical biology.
[34] Xiao-Peng Zhang,et al. Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[35] S. Krishna,et al. Frustrated bistability as a means to engineer oscillations in biological systems. , 2009, Physical biology.
[36] Uttam Surana,et al. Oscillations of the p53-Akt Network: Implications on Cell Survival and Death , 2009, PloS one.
[37] J. Tyson,et al. Design principles of biochemical oscillators , 2008, Nature Reviews Molecular Cell Biology.
[38] Benjamin L Turner,et al. Supporting Online Material Materials and Methods Som Text Figs. S1 to S3 Table S1 References Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops , 2022 .
[39] Alejandra C. Ventura,et al. A Hidden Feedback in Signaling Cascades Is Revealed , 2008, PLoS Comput. Biol..
[40] Eduardo Sontag,et al. Modular cell biology: retroactivity and insulation , 2008, Molecular systems biology.
[41] Liang Qiao,et al. Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling , 2007, PLoS Comput. Biol..
[42] Nils Blüthgen,et al. Effects of sequestration on signal transduction cascades , 2006, The FEBS journal.
[43] Juan F. Poyatos,et al. Dynamical Principles of Two-Component Genetic Oscillators , 2006, PLoS Comput. Biol..
[44] Markus Eiswirth,et al. Feedback loops for chaos in activator-inhibitor systems. , 2005, The Journal of chemical physics.
[45] B. Kholodenko,et al. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades , 2004, The Journal of cell biology.
[46] John J. Tyson,et al. Biochemical Oscillations , 2004 .
[47] C. Soulé. Graphic Requirements for Multistationarity , 2004, Complexus.
[48] Willy Govaerts,et al. MATCONT: A MATLAB package for numerical bifurcation analysis of ODEs , 2003, TOMS.
[49] J. Gouzé. Positive and Negative Circuits in Dynamical Systems , 1998 .
[50] Chi-Ying F. Huang,et al. Ultrasensitivity in the mitogen-activated protein kinase cascade. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[51] Steven H. Strogatz,et al. Nonlinear Dynamics and Chaos , 2024 .
[52] G. Ermentrout,et al. Analysis of neural excitability and oscillations , 1989 .
[53] L. Glass,et al. Oscillation and chaos in physiological control systems. , 1977, Science.
[54] B. Goodwin. Oscillatory behavior in enzymatic control processes. , 1965, Advances in enzyme regulation.
[55] J. Monod,et al. Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.
[56] A. Hodgkin. The local electric changes associated with repetitive action in a non‐medullated axon , 1948, The Journal of physiology.