Time efficient cell detection in histopathology images using convolutional regression networks

Accurate cell detection is often an essential prerequisite for subsequent cellular analysis in computer aided diagnosis (CAD) for histopathlogy images. It is challenging due to high cell density, touching cells, low contrast, variant cell shapes and sizes, weak boundaries and the use of different image acquisition techniques. Existing methods are often struggling at tackling with the challenges at the same time. More importantly, the detection time efficiency, which is also crucial for cell detection in histopathology images, is limited by the complicated and redundant computing for many exsiting methods. In this paper, we propose a novel end-to-end cell detection pipeline based on convolutional regression neural networks to achieve competitive cell detection accuracy and better time efficiency at the same time. We evaluate our method on two challenging cell datasets and the comparative experiments demonstrate the superior performance of our method over existing state of the art.

[1]  Luca Maria Gambardella,et al.  Mitosis Detection in Breast Cancer Histology Images with Deep Neural Networks , 2013, MICCAI.

[2]  Jianzhong Wu,et al.  Stacked Sparse Autoencoder (SSAE) for Nuclei Detection on Breast Cancer Histopathology Images , 2016, IEEE Transactions on Medical Imaging.

[3]  Nasir M. Rajpoot,et al.  Locality Sensitive Deep Learning for Detection and Classification of Nuclei in Routine Colon Cancer Histology Images , 2016, IEEE Trans. Medical Imaging.

[4]  Metin Nafi Gürcan,et al.  Pattern Recognition in Histopathological Images: An ICPR 2010 Contest , 2010, ICPR Contests.

[5]  Hai Su,et al.  Beyond Classification: Structured Regression for Robust Cell Detection Using Convolutional Neural Network , 2015, MICCAI.

[6]  Andreas K. Maier,et al.  Automatic Cell Detection in Bright-Field Microscope Images Using SIFT, Random Forests, and Hierarchical Clustering , 2013, IEEE Transactions on Medical Imaging.

[7]  Vincent Lepetit,et al.  Multiscale Centerline Detection by Learning a Scale-Space Distance Transform , 2014, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[8]  Hai Su,et al.  Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation , 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

[9]  Vincent Lepetit,et al.  You Should Use Regression to Detect Cells , 2015, MICCAI.

[10]  Andrew Zisserman,et al.  Learning to Detect Cells Using Non-overlapping Extremal Regions , 2012, MICCAI.

[11]  Yousef Al-Kofahi,et al.  Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images , 2010, IEEE Transactions on Biomedical Engineering.

[12]  Manohar Kuse,et al.  Local isotropic phase symmetry measure for detection of beta cells and lymphocytes , 2011, Journal of pathology informatics.

[13]  Qing Yang,et al.  Iterative Voting for Inference of Structural Saliency and Characterization of Subcellular Events , 2007, IEEE Transactions on Image Processing.

[14]  Oliver Schmitt,et al.  Morphological multiscale decomposition of connected regions with emphasis on cell clusters , 2009, Comput. Vis. Image Underst..

[15]  Kaiming He,et al.  Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.