Higher-Order VLP-Based Protein Macromolecular Framework Structures Assembled via Coiled-Coil Interactions.

Hierarchical organization is one of the fundamental features observed in biological systems that allows for efficient and effective functioning. Virus-like particles (VLPs) are elegant examples of a hierarchically organized supramolecular structure, where many subunits are self-assembled to generate the functional cage-like architecture. Utilizing VLPs as building blocks to construct two- and three-dimensional (3D) higher-order structures is an emerging research area in developing functional biomimetic materials. VLPs derived from P22 bacteriophages can be repurposed as nanoreactors by encapsulating enzymes and modular units to build higher-order catalytic materials via several techniques. In this study, we have used coiled-coil peptide interactions to mediate the P22 interparticle assembly into a highly stable, amorphous protein macromolecular framework (PMF) material, where the assembly does not depend on the VLP morphology, a limitation observed in previously reported P22 PMF assemblies. Many encapsulated enzymes lose their optimum functionalities under the harsh conditions that are required for the P22 VLP morphology transitions. Therefore, the coiled-coil-based PMF provides a fitting and versatile platform for constructing functional higher-order catalytic materials compatible with sensitive enzymes. We have characterized the material properties of the PMF and utilized the disordered PMF to construct a biocatalytic 3D material performing single- and multistep catalysis.

[1]  T. Douglas,et al.  Enhancing Multistep Reactions: Biomimetic Design of Substrate Channeling Using P22 Virus‐Like Particles , 2023, Advanced science.

[2]  T. Douglas,et al.  Diffusion and molecular partitioning in hierarchically complex virus-like particles. , 2023, Virology.

[3]  P. Prevelige,et al.  Multilayered Ordered Protein Arrays Self-Assembled from a Mixed Population of Virus-like Particles. , 2022, ACS nano.

[4]  T. Douglas,et al.  Substrate Partitioning into Protein Macromolecular Frameworks for Enhanced Catalytic Turnover. , 2021, ACS nano.

[5]  T. Douglas,et al.  Molecular exclusion limits for diffusion across a porous capsid , 2021, Nature Communications.

[6]  R. Selegård,et al.  Coiled coil-based therapeutics and drug delivery systems. , 2020, Advanced drug delivery reviews.

[7]  T. Douglas,et al.  Synthetic Virus-like Particles for Glutathione Biosynthesis. , 2020, ACS synthetic biology.

[8]  M. G. Finn,et al.  Enzyme Stabilization by Virus-Like Particles. , 2020, Biochemistry.

[9]  M. Kostiainen,et al.  Highly ordered protein cage assemblies: A toolkit for new materials. , 2019, Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology.

[10]  T. Douglas,et al.  Virus capsid assembly across different length scales inspire the development of virus-based biomaterials. , 2019, Current opinion in virology.

[11]  K. Sun,et al.  Coiled-Coil-Mediated Assembly of an Icosahedral Protein Cage with Extremely High Thermal and Chemical Stability. , 2019, Journal of the American Chemical Society.

[12]  Vikram Jadhao,et al.  Linker-Mediated Assembly of Virus-Like Particles into Ordered Arrays via Electrostatic Control , 2019, ACS Applied Bio Materials.

[13]  T. Douglas,et al.  Chemically Induced Morphogenesis of P22 Virus-like Particles by the Surfactant Sodium Dodecyl Sulfate. , 2018, Biomacromolecules.

[14]  T. Douglas,et al.  Templated Assembly of a Functional Ordered Protein Macromolecular Framework from P22 Virus-like Particles. , 2018, ACS nano.

[15]  T. Douglas,et al.  Stimuli Responsive Hierarchical Assembly of P22 Virus-like Particles , 2018 .

[16]  M. Fukuto,et al.  Modular Self-Assembly of Protein Cage Lattices for Multistep Catalysis. , 2017, ACS nano.

[17]  B. Wiedenheft,et al.  Programmed Self-Assembly of an Active P22-Cas9 Nanocarrier System. , 2016, Molecular pharmaceutics.

[18]  Trevor Douglas,et al.  Self-assembling biomolecular catalysts for hydrogen production. , 2016, Nature chemistry.

[19]  P. Prevelige,et al.  Higher order assembly of virus-like particles (VLPs) mediated by multi-valent protein linkers. , 2015, Small.

[20]  T. Gedeon,et al.  Encapsulation of an enzyme cascade within the bacteriophage P22 virus-like particle. , 2014, ACS chemical biology.

[21]  P. Prevelige,et al.  Location of the bacteriophage P22 coat protein C-terminus provides opportunities for the design of capsid-based materials. , 2013, Biomacromolecules.

[22]  P. Prevelige,et al.  Stabilizing viral nano-reactors for nerve-agent degradation. , 2013, Biomaterials science.

[23]  N. Linden,et al.  Self-Assembling Cages from Coiled-Coil Peptide Modules , 2013, Science.

[24]  P. Prevelige,et al.  Coconfinement of fluorescent proteins: spatially enforced communication of GFP and mCherry encapsulated within the P22 capsid. , 2012, Biomacromolecules.

[25]  Jiyuan Yang,et al.  Smart self-assembled hybrid hydrogel biomaterials. , 2012, Angewandte Chemie.

[26]  P. Prevelige,et al.  Nanoreactors by programmed enzyme encapsulation inside the capsid of the bacteriophage P22. , 2012, ACS nano.

[27]  Nikhil U. Nair,et al.  Crystal structures of phosphite dehydrogenase provide insights into nicotinamide cofactor regeneration. , 2012, Biochemistry.

[28]  Huimin Zhao,et al.  Investigation of the Role of Arg301 Identified in the X-ray Structure of Phosphite Dehydrogenase , 2012, Biochemistry.

[29]  K. Ulbrich,et al.  Coiled coil peptides as universal linkers for the attachment of recombinant proteins to polymer therapeutics. , 2011, Biomacromolecules.

[30]  P. Prevelige,et al.  Genetically programmed in vivo packaging of protein cargo and its controlled release from bacteriophage P22. , 2011, Angewandte Chemie.

[31]  M. Finn,et al.  RNA-directed packaging of enzymes within virus-like particles. , 2010, Angewandte Chemie.

[32]  Harm-Anton Klok,et al.  Coiled coils: attractive protein folding motifs for the fabrication of self-assembled, responsive and bioactive materials. , 2010, Chemical Society reviews.

[33]  R. Nolte,et al.  Complex assembly behavior during the encapsulation of green fluorescent protein analogs in virus derived protein capsules. , 2010, Macromolecular bioscience.

[34]  John E. Johnson,et al.  P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks. , 2010, Structure.

[35]  F. Zaera The New Materials Science of Catalysis: Toward Controlling Selectivity by Designing the Structure of the Active Site , 2010 .

[36]  Inge J. Minten,et al.  Controlled encapsulation of multiple proteins in virus capsids. , 2009, Journal of the American Chemical Society.

[37]  B. Wiedenheft,et al.  Bioprospecting in high temperature environments; application of thermostable protein cages. , 2007, Soft matter.

[38]  Trevor Douglas,et al.  Biological Containers: Protein Cages as Multifunctional Nanoplatforms , 2007 .

[39]  Trevor Douglas,et al.  Viruses: Making Friends with Old Foes , 2006, Science.

[40]  R. Hodges,et al.  NMR solution structure of a highly stable de novo heterodimeric coiled‐coil , 2004, Biopolymers.

[41]  Robert Langer,et al.  Coiled‐Coil Peptide‐Based Assembly of Gold Nanoparticles , 2004 .

[42]  L. Mueller,et al.  Characterization of a new four‐chain coiled‐coil: Influence of chain length on stability , 1995, Protein science : a publication of the Protein Society.

[43]  R. Hodges,et al.  Effect of chain length on the formation and stability of synthetic alpha-helical coiled coils. , 1994, Biochemistry.

[44]  P. Schultz,et al.  The interplay between chemistry and biology in the design of enzymatic catalysts. , 1988, Science.

[45]  D. Botstein,et al.  Mechanism of head assembly and DNA encapsulation in Salmonella phage p22. I. Genes, proteins, structures and DNA maturation. , 1973, Journal of molecular biology.