A peptide N-terminal protection strategy for comprehensive glycoproteome analysis using hydrazide chemistry based method

[1]  A. Scaloni,et al.  Corrections to Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises. , 2015, Chemical reviews.

[2]  H. Zou,et al.  In situ sample processing approach (iSPA) for comprehensive quantitative phosphoproteome analysis. , 2014, Journal of proteome research.

[3]  D. Figeys,et al.  Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS. , 2014, Journal of proteomics.

[4]  H. Zou,et al.  Comprehensive mapping of protein N-glycosylation in human liver by combining hydrophilic interaction chromatography and hydrazide chemistry. , 2014, Journal of proteome research.

[5]  W. Ying,et al.  N-glycoproteome Analysis of the Secretome of Human Metastatic Hepatocellular Carcinoma Cell Lines Combining Hydrazide Chemistry, HILIC Enrichment and Mass Spectrometry , 2013, PloS one.

[6]  T. Thannhauser,et al.  A Comparative Study of Lectin Affinity Based Plant N-Glycoproteome Profiling Using Tomato Fruit as a Model* , 2013, Molecular & Cellular Proteomics.

[7]  A. Scaloni,et al.  Redox proteomics: chemical principles, methodological approaches and biological/biomedical promises. , 2013, Chemical reviews.

[8]  Kathryn S Lilley,et al.  Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins , 2013, Cell Communication and Signaling.

[9]  H. Narimatsu,et al.  Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach , 2012, Scientific Reports.

[10]  H. Zou,et al.  Synthesis of branched PEG brushes hybrid hydrophilic magnetic nanoparticles for the selective enrichment of N-linked glycopeptides. , 2012, Chemical communications.

[11]  H. Zou,et al.  Centrifugation assisted microreactor enables facile integration of trypsin digestion, hydrophilic interaction chromatography enrichment, and on-column deglycosylation for rapid and sensitive N-glycoproteome analysis. , 2012, Analytical chemistry.

[12]  B. Domon,et al.  Mass spectrometry–based detection and quantification of plasma glycoproteins using selective reaction monitoring , 2012, Nature Protocols.

[13]  Michael P. Cusack,et al.  Lectin chromatography/mass spectrometry discovery workflow identifies putative biomarkers of aggressive breast cancers. , 2012, Journal of proteome research.

[14]  Martin R Larsen,et al.  Chemical deamidation: a common pitfall in large-scale N-linked glycoproteomic mass spectrometry-based analyses. , 2012, Journal of proteome research.

[15]  S. Hattori,et al.  Development of a Novel Method for Analyzing Collagen O-glycosylations by Hydrazide Chemistry , 2012, Molecular & Cellular Proteomics.

[16]  Daniel Figeys,et al.  Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach. , 2011, Analytical chemistry.

[17]  Martin R Larsen,et al.  Selective enrichment of sialic acid–containing glycopeptides using titanium dioxide chromatography with analysis by HILIC and mass spectrometry , 2010, Nature Protocols.

[18]  Ruedi Aebersold,et al.  Mass Spectrometry Based Glycoproteomics—From a Proteomics Perspective* , 2010, Molecular & Cellular Proteomics.

[19]  Florian Gnad,et al.  Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints , 2010, Cell.

[20]  H. Zou,et al.  A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis. , 2010, Analytical chemistry.

[21]  Yuan Tian,et al.  Glycoproteomics and clinical applications , 2010, Proteomics. Clinical applications.

[22]  C. Hesse,et al.  Enrichment of glycopeptides for glycan structure and attachment site identification , 2009, Nature Methods.

[23]  T. Ramya,et al.  High-efficiency labeling of sialylated glycoproteins on living cells , 2009, Nature Methods.

[24]  Ten-Yang Yen,et al.  Combining Results from Lectin Affinity Chromatography and Glycocapture Approaches Substantially Improves the Coverage of the Glycoproteome*S , 2009, Molecular & Cellular Proteomics.

[25]  Xinning Jiang,et al.  Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. , 2009, Journal of proteome research.

[26]  Haojie Lu,et al.  Identification of N-glycosylation sites on secreted proteins of human hepatocellular carcinoma cells with a complementary proteomics approach. , 2009, Journal of proteome research.

[27]  M. Mann,et al.  MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.

[28]  M. Larsen,et al.  Exploring the Sialiome Using Titanium Dioxide Chromatography and Mass Spectrometry *S , 2007, Molecular & Cellular Proteomics.

[29]  Yuan Tian,et al.  Solid-phase extraction of N-linked glycopeptides , 2007, Nature Protocols.

[30]  L. Hood,et al.  Shotgun Glycopeptide Capture Approach Coupled with Mass Spectrometry for Comprehensive Glycoproteomics *S , 2007, Molecular & Cellular Proteomics.

[31]  N. Anderson,et al.  A List of Candidate Cancer Biomarkers for Targeted Proteomics , 2006, Biomarker insights.

[32]  W. Hancock,et al.  Approach to the comprehensive analysis of glycoproteins isolated from human serum using a multi-lectin affinity column. , 2004, Journal of chromatography. A.

[33]  Jakob Bunkenborg,et al.  A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation. , 2004, Journal of proteome research.

[34]  E. Diamandis Mass Spectrometry as a Diagnostic and a Cancer Biomarker Discovery Tool , 2004, Molecular & Cellular Proteomics.

[35]  Shu-Hui Chen,et al.  Stable-isotope dimethyl labeling for quantitative proteomics. , 2003, Analytical chemistry.

[36]  Ruedi Aebersold,et al.  Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry , 2003, Nature Biotechnology.

[37]  J. Hirabayashi,et al.  Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins , 2003, Nature Biotechnology.

[38]  J. Roth Protein N‐Glycosylation along the Secretory Pathway: Relationship to Organelle Topography and Function, Protein Quality Control, and Cell Interactions , 2002 .

[39]  R. Spiro Protein glycosylation: nature, distribution, enzymatic formation, and disease implications of glycopeptide bonds. , 2002, Glycobiology.

[40]  J. Roth Protein N-glycosylation along the secretory pathway: relationship to organelle topography and function, protein quality control, and cell interactions. , 2002, Chemical reviews.

[41]  A. Helenius,et al.  Intracellular functions of N-linked glycans. , 2001, Science.

[42]  J. Lowe Glycosylation, Immunity, and Autoimmunity , 2001, Cell.

[43]  N Seta,et al.  Protein glycosylation and diseases: blood and urinary oligosaccharides as markers for diagnosis and therapeutic monitoring. , 2000, Clinical chemistry.

[44]  K. Geoghegan,et al.  Site-directed conjugation of nonpeptide groups to peptides and proteins via periodate oxidation of a 2-amino alcohol. Application to modification at N-terminal serine. , 1992, Bioconjugate chemistry.

[45]  D. Dearborn,et al.  Labeling of proteins by reductive methylation using sodium cyanoborohydride. , 1979, The Journal of biological chemistry.

[46]  A. Previero,et al.  Tryptophan Modification in Polypeptide Chains , 1964, Nature.

[47]  E. Percival Advances in Carbohydrate Chemistry , 1947, Nature.

[48]  Reinout Raijmakers,et al.  Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics , 2009, Nature Protocols.

[49]  A. J. Parodi,et al.  Protein glucosylation and its role in protein folding. , 2000, Annual review of biochemistry.

[50]  J. Bobbitt Periodate oxidation of carbohydrates. , 1956, Advances in carbohydrate chemistry.