Motor proteins of the kinesin family. Structures, variations, and nucleotide binding sites.

Microtubule-dependent motors of the kinesin family convert the energy from ATP hydrolysis into mechanical work in order to transport vesicles and organelles along microtubules. The motor domains of several kinesins have been solved by X-ray diffraction, but the conformational changes associated with force development remain unknown. Here we describe conformational properties of kinesin that might be related to the mechanism of action. First, we have evaluated the conformational variability among all known kinesin structures and find they are concentrated in six areas, most of which are functionally important either in microtubule binding or in linking the core motor to the stalk. Secondly, we show that there is an important difference between kinesins when compared with myosins or GTPases (with which kinesin motor domains bear structural and catalytic similarities); in the diphosphate-state (with bound ADP), all kinesins show a 'tight' nucleotide-binding pocket, comparable with myosin or GTPases in the triphosphate state, whose nucleotide-binding pockets become open, or 'loose', following nucleotide hydrolysis. Thus, kinesin-ADP appears to be in a tense state, resembling that observed in myosin-ATP or p21ras-GTP.

[1]  M. Schliwa,et al.  Reversal in the direction of movement of a molecular motor , 1997, Nature.

[2]  R. Goody,et al.  Formation of a Transition-State Analog of the Ras GTPase Reaction by Ras·GDP, Tetrafluoroaluminate, and GTPase-Activating Proteins , 1996, Science.

[3]  D A Winkelmann,et al.  Three-dimensional structure of myosin subfragment-1: a molecular motor. , 1993, Science.

[4]  E. Mandelkow,et al.  Image Reconstructions of Microtubules Decorated with Monomeric and Dimeric Kinesins: Comparison with X-Ray Structure and Implications for Motility , 1998, The Journal of cell biology.

[5]  P. Sigler,et al.  Structural aspects of heterotrimeric G-protein signaling. , 1997, Current opinion in biotechnology.

[6]  K Schulten,et al.  Nucleotide-dependent movements of the kinesin motor domain predicted by simulated annealing. , 1998, Biophysical journal.

[7]  A. Wittinghofer Deciphering the alphabet of G proteins: the structure of the α, β, γ heterotrimer , 1996 .

[8]  Ronald D Vale,et al.  Microtubule Interaction Site of the Kinesin Motor , 1997, Cell.

[9]  E A Merritt,et al.  Raster3D: photorealistic molecular graphics. , 1997, Methods in enzymology.

[10]  H M Holden,et al.  X-ray structures of the myosin motor domain of Dictyostelium discoideum complexed with MgADP.BeFx and MgADP.AlF4-. , 1995, Biochemistry.

[11]  S H Kim,et al.  Crystal structures at 2.2 A resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP. , 1991, Journal of molecular biology.

[12]  Roger Cooke,et al.  Crystal structure of the motor domain of the kinesin-related motor ncd , 1996, Nature.

[13]  S A Endow,et al.  Binding sites on microtubules of kinesin motors of the same or opposite polarity. , 1996, Biochemistry.

[14]  E. Taylor,et al.  Interacting Head Mechanism of Microtubule-Kinesin ATPase* , 1997, The Journal of Biological Chemistry.

[15]  Ivan Rayment,et al.  X-ray structure of the magnesium(II).ADP.vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 A resolution. , 1996 .

[16]  Rolf Hilgenfeld,et al.  An α to β conformational switch in EF-Tu , 1996 .

[17]  S. Endow Microtubule motors in spindle and chromosome motility. , 1999, European journal of biochemistry.

[18]  I. Rayment,et al.  Structural studies on myosin II: Communication between distant protein domains , 1997, BioEssays : news and reviews in molecular, cellular and developmental biology.

[19]  R. Hilgenfeld,et al.  Crystal structure of active elongation factor Tu reveals major domain rearrangements , 1993, Nature.

[20]  R M Esnouf,et al.  An extensively modified version of MolScript that includes greatly enhanced coloring capabilities. , 1997, Journal of molecular graphics & modelling.

[21]  K. Holmes The swinging lever-arm hypothesis of muscle contraction , 1997, Current Biology.

[22]  Ronald D. Vale,et al.  Role of the Kinesin Neck Region in Processive Microtubule-based Motility , 1998, The Journal of cell biology.

[23]  S. Endow,et al.  Determinants of kinesin motor polarity. , 1998, Science.

[24]  K. Johnson,et al.  Alternating site mechanism of the kinesin ATPase. , 1998, Biochemistry.

[25]  E. Mandelkow,et al.  X-ray structure of motor and neck domains from rat brain kinesin. , 1997, Biochemistry.

[26]  K. Fujiwara,et al.  Functional transitions in myosin: formation of a critical salt-bridge and transmission of effect to the sensitive tryptophan. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[27]  I. Rayment,et al.  X-ray crystal structure of the yeast Kar3 motor domain complexed with Mg.ADP to 2.3 A resolution. , 1998, Biochemistry.

[28]  J. Whisstock,et al.  Conservation within the myosin motor domain: implications for structure and function. , 1996, Structure.

[29]  S R Sprang,et al.  G protein mechanisms: insights from structural analysis. , 1997, Annual review of biochemistry.

[30]  Andreas Hoenger,et al.  A Model for the Microtubule-Ncd Motor Protein Complex Obtained by Cryo-Electron Microscopy and Image Analysis , 1997, Cell.

[31]  P B Sigler,et al.  The 2.2 A crystal structure of transducin-alpha complexed with GTP gamma S. , 1994, Nature.

[32]  E. Mandelkow,et al.  Conformations of kinesin: solution vs. crystal structures and interactions with microtubules , 1998, European Biophysics Journal.

[33]  Ronald D Vale,et al.  The Directional Preference of Kinesin Motors Is Specified by an Element outside of the Motor Catalytic Domain , 1997, Cell.

[34]  M. Sheetz,et al.  Motor and cargo interactions. , 1999, European journal of biochemistry.

[35]  Heidi E. Hamm,et al.  The 2.2 Å crystal structure of transducin-α complexed with GTPγS , 1993, Nature.

[36]  E. Mandelkow,et al.  The Crystal Structure of Dimeric Kinesin and Implications for Microtubule-Dependent Motility , 1997, Cell.

[37]  N. Hirokawa,et al.  Kinesin and dynein superfamily proteins and the mechanism of organelle transport. , 1998, Science.

[38]  I. Rayment,et al.  X-ray structures of the MgADP, MgATPgammaS, and MgAMPPNP complexes of the Dictyostelium discoideum myosin motor domain. , 1997, Biochemistry.

[39]  R. A. Laymon,et al.  A three-domain structure of kinesin heavy chain revealed by DNA sequence and microtubule binding analyses , 1989, Cell.

[40]  E. Mandelkow,et al.  The coiled-coil helix in the neck of kinesin. , 1998, Journal of structural biology.

[41]  W. Kabsch,et al.  Structure of the guanine-nucleotide-binding domain of the Ha-ras oncogene product p21 in the triphosphate conformation , 1989, Nature.

[42]  R. Hodges,et al.  Demonstration of Coiled-Coil Interactions within the Kinesin Neck Region Using Synthetic Peptides , 1997, The Journal of Biological Chemistry.

[43]  Heidi E. Hamm,et al.  Structural determinants for activation of the α-subunit of a heterotrimeric G protein , 1994, Nature.

[44]  E. Mandelkow,et al.  Interaction of monomeric and dimeric kinesin with microtubules. , 1998, Journal of molecular biology.

[45]  R J Fletterick,et al.  The design plan of kinesin motors. , 1997, Annual review of cell and developmental biology.

[46]  H. Morii,et al.  Identification of kinesin neck region as a stable alpha-helical coiled coil and its thermodynamic characterization. , 1997, Biochemistry.

[47]  R. Vale,et al.  Switches, latches, and amplifiers: common themes of G proteins and molecular motors , 1996, The Journal of cell biology.

[48]  Ronald D. Vale,et al.  Direction determination in the minus-end-directed kinesin motor ncd , 1998, Nature.

[49]  D. Hackney,et al.  Evidence for alternating head catalysis by kinesin during microtubule-stimulated ATP hydrolysis. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[50]  Roberto Dominguez,et al.  Crystal Structure of a Vertebrate Smooth Muscle Myosin Motor Domain and Its Complex with the Essential Light Chain Visualization of the Pre–Power Stroke State , 1998, Cell.

[51]  Ronald D. Vale,et al.  Crystal structure of the kinesin motor domain reveals a structural similarity to myosin , 1996, Nature.