Testing for pathway (in)activation by using Gaussian graphical models
暂无分享,去创建一个
Wessel N. van Wieringen | Carel F. W. Peeters | Mark A. van de Wiel | W. N. Wieringen | C. Peeters | Renee Menezes | Mark A. Wiel | Renee X. de Menezes | Renée X. Menezes
[1] W. Gautschi,et al. An algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form , 1986 .
[2] Charles J. Geyer,et al. Ridge Fusion in Statistical Learning , 2013, ArXiv.
[3] Larry A. Wasserman,et al. The Nonparanormal: Semiparametric Estimation of High Dimensional Undirected Graphs , 2009, J. Mach. Learn. Res..
[4] Aad van der Vaart,et al. A Test for Partial Differential Expression , 2008 .
[5] Tianxi Cai,et al. Testing Differential Networks with Applications to Detecting Gene-by-Gene Interactions. , 2015, Biometrika.
[6] Yang I Li,et al. An Expanded View of Complex Traits: From Polygenic to Omnigenic , 2017, Cell.
[7] S. Horvath,et al. Weighted gene coexpression network analysis strategies applied to mouse weight , 2007, Mammalian Genome.
[8] Olivier Ledoit,et al. A well-conditioned estimator for large-dimensional covariance matrices , 2004 .
[9] Nicholas J. Higham,et al. Functions of matrices - theory and computation , 2008 .
[10] T. Tony Cai,et al. Global Testing and Large-Scale Multiple Testing for High-Dimensional Covariance Structures , 2017 .
[11] Yin Xia. Testing and support recovery of multiple high-dimensional covariance matrices with false discovery rate control , 2017 .
[12] Wessel N. van Wieringen,et al. Targeted Fused Ridge Estimation of Inverse Covariance Matrices from Multiple High-Dimensional Data Classes , 2015, J. Mach. Learn. Res..
[13] A. W. Vaart,et al. Transcriptomic Heterogeneity in Cancer as a Consequence of Dysregulation of the Gene–Gene Interaction Network , 2015 .
[14] M. Rubin,et al. Genome-wide DNA methylation events in TMPRSS2-ERG fusion-negative prostate cancers implicate an EZH2-dependent mechanism with miR-26a hypermethylation. , 2012, Cancer discovery.
[15] Marie Evangelista,et al. The Hedgehog Signaling Pathway in Cancer , 2006, Clinical Cancer Research.
[16] Aad van der Vaart,et al. Statistical analysis of the cancer cell's molecular entropy using high-throughput data , 2011, Bioinform..
[17] Tun-Wen Pai,et al. Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs , 2010, BMC Systems Biology.
[18] Alex E. Lash,et al. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository , 2002, Nucleic Acids Res..
[19] Wessel N. van Wieringen,et al. Ridge estimation of inverse covariance matrices from high-dimensional data , 2014, Comput. Stat. Data Anal..
[20] P. Müller,et al. Bayesian Graphical Models for Differential Pathways , 2016 .
[21] T. Cai,et al. Direct estimation of differential networks. , 2014, Biometrika.
[22] Patrick Danaher,et al. The joint graphical lasso for inverse covariance estimation across multiple classes , 2011, Journal of the Royal Statistical Society. Series B, Statistical methodology.
[23] Takumi Saegusa,et al. Joint Estimation of Precision Matrices in Heterogeneous Populations. , 2016, Electronic journal of statistics.
[24] Antoine Souloumiac,et al. Jacobi Angles for Simultaneous Diagonalization , 1996, SIAM J. Matrix Anal. Appl..
[25] M. West,et al. Sparse graphical models for exploring gene expression data , 2004 .
[26] James R. Schott,et al. A test for the equality of covariance matrices when the dimension is large relative to the sample sizes , 2007, Comput. Stat. Data Anal..
[27] Seung-Jean Kim,et al. Condition‐number‐regularized covariance estimation , 2013, Journal of the Royal Statistical Society. Series B, Statistical methodology.
[28] Frank McCormick,et al. Activation of the hedgehog pathway in advanced prostate cancer , 2004, Molecular Cancer.
[29] M. E. Ruaro,et al. The growth arrest-specific gene, gas1, is involved in growth suppression , 1992, Cell.
[30] Sach Mukherjee,et al. Multivariate gene-set testing based on graphical models. , 2015, Biostatistics.
[31] E. Levina,et al. Joint estimation of multiple graphical models. , 2011, Biometrika.
[32] N. Campbell. Robust Procedures in Multivariate Analysis I: Robust Covariance Estimation , 1980 .
[33] Kim-Anh Do,et al. DINGO: differential network analysis in genomics , 2015, Bioinform..
[34] Christine B Peterson,et al. Bayesian Inference of Multiple Gaussian Graphical Models , 2015, Journal of the American Statistical Association.
[35] P. Bryant,et al. Somatic Mutations and Altered Expression of the Candidate Tumor Suppressors CSNK1ε, DLG1, and EDD/hHYD in Mammary Ductal Carcinoma , 2004, Cancer Research.