Inherent Minor Conformer of Bordetella Effector BteA Directs Chaperone-Mediated Unfolding.

The pathogen Bordetella pertussis uses a type-3 secretion system (T3SS) to inject its cytotoxic effector BteA into the host cell via a designated needle structure. Prior to injection BteA is bound to its cognate chaperone BtcA presumed to assist in effector unfolding en route to needle passage. We utilized NMR and EPR spectroscopy to uncover the molecular mechanism of BtcA-mediated unfolding of BteA. BtcA induces a global structural change in the effector, which adopts a more extended and partially unfolded conformation. EPR distance measurements further show that the structured helical-bundle form of free BteA exists in conformational equilibrium with a lowly populated minor species. The nature of this equilibrium was probed using NMR relaxation dispersion experiments. At 283 K structural effects are most pronounced for a contiguous surface spanning the A- and B-helices of BteA, extending at 303 K to a second surface including the D- and E-helices. Residues perturbed in the minor conformation coincide with those exhibiting a BtcA-induced increase in flexibility, identifying this conformation as the BtcA-bound form of the effector. Our findings hint at a conformational-selectivity mechanism for the chaperone interaction with the effector, a paradigm that may be common to effector-chaperones secretion complexes in this family of pathogens.

[1]  J. Freed,et al.  Benchmark Test and Guidelines for DEER/PELDOR Experiments on Nitroxide-Labeled Biomolecules. , 2021, Journal of the American Chemical Society.

[2]  R. Zarivach,et al.  Structure and membrane-targeting of a Bordetella pertussis effector N-terminal domain. , 2019, Biochimica et biophysica acta. Biomembranes.

[3]  A. Schug,et al.  Formation of a Secretion-Competent Protein Complex by a Dynamic Wrap-around Binding Mechanism. , 2018, Journal of molecular biology.

[4]  S. Wagner,et al.  Revealing the mechanisms of membrane protein export by virulence-associated bacterial secretion systems , 2018, Nature Communications.

[5]  E. Walinda,et al.  Overview of Relaxation Dispersion NMR Spectroscopy to Study Protein Dynamics and Protein‐Ligand Interactions , 2018, Current protocols in protein science.

[6]  M. Shirakawa,et al.  F1F2-selective NMR spectroscopy , 2017, Journal of biomolecular NMR.

[7]  B. Finlay,et al.  Assembly, structure, function and regulation of type III secretion systems , 2017, Nature Reviews Microbiology.

[8]  A. Palmer,et al.  Chemical exchange in biomacromolecules: past, present, and future. , 2014, Journal of magnetic resonance.

[9]  R. Bitton,et al.  BtcA, A Class IA Type III Chaperone, Interacts with the BteA N-Terminal Domain through a Globular/Non-Globular Mechanism , 2013, PloS one.

[10]  R. Bitton,et al.  Characterization of the N-Terminal Domain of BteA: A Bordetella Type III Secreted Cytotoxic Effector , 2013, PloS one.

[11]  Jeff F. Miller,et al.  The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts , 2009, Cellular microbiology.

[12]  Dmitry M Korzhnev,et al.  Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding. , 2008, Accounts of chemical research.

[13]  G. Cornelis,et al.  The discovery of SycO highlights a new function for type III secretion effector chaperones , 2006, The EMBO journal.

[14]  C. E. Stebbins,et al.  A common structural motif in the binding of virulence factors to bacterial secretion chaperones. , 2006, Molecular cell.

[15]  Seema Mattoo,et al.  A genome‐wide screen identifies a Bordetella type III secretion effector and candidate effectors in other species , 2005, Molecular microbiology.

[16]  P. Sansonetti,et al.  Structure and composition of the Shigella flexneri‘needle complex’, a part of its type III secreton , 2001, Molecular microbiology.

[17]  G. Jeschke,et al.  Dead-time free measurement of dipole-dipole interactions between electron spins. , 2000, Journal of magnetic resonance.

[18]  J. Galán,et al.  Supramolecular structure of the Salmonella typhimurium type III protein secretion system. , 1998, Science.

[19]  Jack H. Freed,et al.  Nonlinear-Least-Squares Analysis of Slow-Motion EPR Spectra in One and Two Dimensions Using a Modified Levenberg–Marquardt Algorithm , 1996 .

[20]  P. Schultz,et al.  Site-specific incorporation of biophysical probes into proteins. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[21]  J. H. Strange,et al.  Studies of chemical exchange by nuclear magnetic relaxation in the rotating frame , 1970 .