Advances in understanding Norway spruce natural resistance to needle bladder rust infection: transcriptional and secondary metabolites profiling

[1]  N. Gierlinger,et al.  Raman imaging reveals in-situ microchemistry of cuticle and epidermis of spruce needles , 2021, Plant methods.

[2]  Minoru Kanehisa,et al.  KEGG: integrating viruses and cellular organisms , 2020, Nucleic Acids Res..

[3]  Xiaoyu Wang,et al.  Update on Cuticular Wax Biosynthesis and Its Roles in Plant Disease Resistance , 2020, International journal of molecular sciences.

[4]  S. Salzberg,et al.  Genomic basis of white pine blister rust quantitative disease resistance and its relationship with qualitative resistance. , 2020, The Plant journal : for cell and molecular biology.

[5]  P. Ding,et al.  Stories of Salicylic Acid: A Plant Defense Hormone. , 2020, Trends in plant science.

[6]  A. Ganthaler,et al.  RNA-Seq and secondary metabolite analyses reveal a putative defence-transcriptome in Norway spruce (Picea abies) against needle bladder rust (Chrysomyxa rhododendri) infection , 2020, BMC Genomics.

[7]  E. Iturritxa,et al.  The transcriptome of Pinus pinaster under Fusarium circinatum challenge , 2020, BMC Genomics.

[8]  The Spruce Genome , 2020 .

[9]  Minoru Kanehisa,et al.  Toward understanding the origin and evolution of cellular organisms , 2019, Protein science : a publication of the Protein Society.

[10]  Jing Yang,et al.  The Crosstalks Between Jasmonic Acid and Other Plant Hormone Signaling Highlight the Involvement of Jasmonic Acid as a Core Component in Plant Response to Biotic and Abiotic Stresses , 2019, Front. Plant Sci..

[11]  F. Asiegbu,et al.  Evaluation of potential genetic and chemical markers for Scots pine tolerance against Heterobasidion annosum infection , 2019, Planta.

[12]  J. Gershenzon,et al.  Roles of plant volatiles in defense against microbial pathogens and microbial exploitation of volatiles. , 2019, Plant, cell & environment.

[13]  Muhammad Arif,et al.  Plant defensins: types, mechanism of action and prospects of genetic engineering for enhanced disease resistance in plants , 2019, 3 Biotech.

[14]  Zejian Guo,et al.  WRKY transcription factors: evolution, binding, and action , 2019, Phytopathology Research.

[15]  J. Gershenzon,et al.  Flavanone-3-Hydroxylase Plays an Important Role in the Biosynthesis of Spruce Phenolic Defenses Against Bark Beetles and Their Fungal Associates , 2019, Front. Plant Sci..

[16]  Xiaoyu Wang,et al.  Wheat CHD3 protein TaCHR729 regulates the cuticular wax biosynthesis required for stimulating germination of Blumeria graminis f.sp. tritici , 2018, Journal of experimental botany.

[17]  F. Asiegbu,et al.  Dual RNA-seq analysis provides new insights into interactions between Norway spruce and necrotrophic pathogen Heterobasidion annosum s.l. , 2019, BMC Plant Biology.

[18]  G. Peter Breeding and Engineering Trees to Accumulate High Levels of Terpene Metabolites for Plant Defense and Renewable Chemicals , 2018, Front. Plant Sci..

[19]  G. Howe,et al.  JAZ repressors of metabolic defense promote growth and reproductive fitness in Arabidopsis , 2018, Proceedings of the National Academy of Sciences.

[20]  A. Ludwików,et al.  Mitogen-Activated Protein Kinase Cascades in Plant Hormone Signaling , 2018, Front. Plant Sci..

[21]  V. E. Viana,et al.  Can WRKY transcription factors help plants to overcome environmental challenges? , 2018, Genetics and molecular biology.

[22]  Xin Li,et al.  Salicylic Acid: A Double-Edged Sword for Programed Cell Death in Plants , 2018, Front. Plant Sci..

[23]  F. Holtmeier,et al.  Subalpine Forest and Treeline Ecotone under the Influence of Disturbances: A Review , 2018 .

[24]  H. Hirt,et al.  Nuclear Signaling of Plant MAPKs , 2018, Front. Plant Sci..

[25]  Xianying Fang,et al.  RNA-Seq analysis and comparison of the enzymes involved in ionone synthesis of three cultivars of Osmanthus , 2018, Journal of Asian natural products research.

[26]  J. Gershenzon,et al.  Gallocatechin biosynthesis via a flavonoid 3',5'-hydroxylase is a defense response in Norway spruce against infection by the bark beetle-associated sap-staining fungus Endoconidiophora polonica. , 2018, Phytochemistry.

[27]  Yuelin Zhang,et al.  Convergent and Divergent Signaling in PAMP-Triggered Immunity and Effector-Triggered Immunity. , 2017, Molecular plant-microbe interactions : MPMI.

[28]  S. Khayyat,et al.  Bioactive epoxides and hydroperoxides derived from naturally monoterpene geranyl acetate , 2017, Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society.

[29]  Bostjan Kobe,et al.  Emerging Insights into the Functions of Pathogenesis-Related Protein 1. , 2017, Trends in plant science.

[30]  David T. W. Tzeng,et al.  MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato[OPEN] , 2017, Plant Cell.

[31]  A. Ganthaler,et al.  Foliar Phenolic Compounds in Norway Spruce with Varying Susceptibility to Chrysomyxa rhododendri: Analyses of Seasonal and Infection-Induced Accumulation Patterns , 2017, Front. Plant Sci..

[32]  A. Ganthaler,et al.  Association genetics of phenolic needle compounds in Norway spruce with variable susceptibility to needle bladder rust , 2017, Plant Molecular Biology.

[33]  G. Neuner,et al.  Drought affects the heat-hardening capacity of alpine plants as indicated by changes in xanthophyll cycle pigments, singlet oxygen scavenging, α-tocopherol and plant hormones , 2017 .

[34]  G. Gudesblat,et al.  Coronatine Inhibits Stomatal Closure through Guard Cell-Specific Inhibition of NADPH Oxidase-Dependent ROS Production , 2016, Front. Plant Sci..

[35]  Hong Feng,et al.  Transcriptome analysis confers a complex disease resistance network in wild rice Oryza meyeriana against Xanthomonas oryzae pv. oryzae , 2016, Scientific Reports.

[36]  R. McQuinn,et al.  Synthesis and Function of Apocarotenoid Signals in Plants. , 2016, Trends in plant science.

[37]  D. Pandey,et al.  Plant Defense Signaling and Responses Against Necrotrophic Fungal Pathogens , 2016, Journal of Plant Growth Regulation.

[38]  Y. van de Peer,et al.  The Plant Genome Integrative Explorer Resource: PlantGenIE.org. , 2015, The New phytologist.

[39]  Alexander Dobin,et al.  Mapping RNA‐seq Reads with STAR , 2015, Current protocols in bioinformatics.

[40]  H. Solheim,et al.  Transcriptional responses of Norway spruce (Picea abies) inner sapwood against Heterobasidion parviporum. , 2015, Tree physiology.

[41]  Jaak Vilo,et al.  ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap , 2015, Nucleic Acids Res..

[42]  A. Ganthaler,et al.  Temporal variation in airborne spore concentration of Chrysomyxa rhododendri: correlation with weather conditions and consequences for Norway spruce infection , 2015 .

[43]  W. Huber,et al.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.

[44]  L. Marini,et al.  Testing phenotypic trade-offs in the chemical defence strategy of Scots pine under growth-limiting field conditions. , 2014, Tree physiology.

[45]  L. Sampedro Physiological trade-offs in the complexity of pine tree defensive chemistry. , 2014, Tree physiology.

[46]  Philippe Bardou,et al.  jvenn: an interactive Venn diagram viewer , 2014, BMC Bioinformatics.

[47]  J. Bohlmann,et al.  Plasticity and Evolution of (+)-3-Carene Synthase and (−)-Sabinene Synthase Functions of a Sitka Spruce Monoterpene Synthase Gene Family Associated with Weevil Resistance* , 2014, The Journal of Biological Chemistry.

[48]  K. Sikora,et al.  Using laser micro-dissection and qRT-PCR to analyze cell type-specific gene expression in Norway spruce phloem , 2014, PeerJ.

[49]  P. Pelegrini,et al.  Antifungal defensins and their role in plant defense , 2014, Front. Microbiol..

[50]  S. Corradini,et al.  Chrysomyxa rhododendri in Trentino: a first analysis of monitoring data. , 2014 .

[51]  A. Ganthaler,et al.  Effects of the needle bladder rust (Chrysomyxa rhododendri) on Norway spruce: implications for subalpine forests , 2014, European Journal of Forest Research.

[52]  R. Sturrock,et al.  Transcriptome analysis of Pinus monticola primary needles by RNA-seq provides novel insight into host resistance to Cronartium ribicola , 2013, BMC Genomics.

[53]  L. Peña,et al.  Terpene Down-Regulation Triggers Defense Responses in Transgenic Orange Leading to Resistance against Fungal Pathogens1[W] , 2013, Plant Physiology.

[54]  Douglas G. Scofield,et al.  The Norway spruce genome sequence and conifer genome evolution , 2013, Nature.

[55]  Kemal Kazan,et al.  MYC2: the master in action. , 2013, Molecular plant.

[56]  Martin Mozina,et al.  Orange: data mining toolbox in python , 2013, J. Mach. Learn. Res..

[57]  J. West,et al.  Comparative biology of different plant pathogens to estimate effects of climate change on crop diseases in Europe , 2012, European Journal of Plant Pathology.

[58]  A. Borg-Karlson,et al.  Chemical and transcriptional responses of Norway spruce genotypes with different susceptibility to Heterobasidion spp. infection , 2011, BMC Plant Biology.

[59]  J. Bohlmann,et al.  An integrated genomic, proteomic and biochemical analysis of (+)-3-carene biosynthesis in Sitka spruce (Picea sitchensis) genotypes that are resistant or susceptible to white pine weevil. , 2011, The Plant journal : for cell and molecular biology.

[60]  D. Herms,et al.  Differential effects of nutrient availability on the secondary metabolism of Austrian pine (Pinus nigra) phloem and resistance to Diplodia pinea , 2011 .

[61]  A. Borg-Karlson,et al.  The influence of Ceratocystis polonica inoculation and methyl jasmonate application on terpene chemistry of Norway spruce, Picea abies. , 2010, Phytochemistry.

[62]  S. Mayr,et al.  Damage in needle tissues after infection with Chrysomyxa rhododendri increases cuticular conductance of Picea abies in winter , 2010, Protoplasma.

[63]  D. Roby,et al.  Very long chain fatty acid and lipid signaling in the response of plants to pathogens , 2009, Plant signaling & behavior.

[64]  J. Martín,et al.  Phenolic metabolites in the resistance of northern forest trees to pathogens — past experiences and future prospects , 2008 .

[65]  H. Klee,et al.  The Carotenoid Cleavage Dioxygenase 1 Enzyme Has Broad Substrate Specificity, Cleaving Multiple Carotenoids at Two Different Bond Positions* , 2008, Journal of Biological Chemistry.

[66]  D. Herms,et al.  Systemic induction of phloem secondary metabolism and its relationship to resistance to a canker pathogen in Austrian pine. , 2008, The New phytologist.

[67]  J. Gershenzon,et al.  Cloning and characterization of two different types of geranyl diphosphate synthases from Norway spruce (Picea abies). , 2008, Phytochemistry.

[68]  B. Erschbamer,et al.  Vegetation at the Upper Timberline , 2007 .

[69]  R. Ranjeva,et al.  Calcium in plant defence-signalling pathways. , 2006, The New phytologist.

[70]  O. Junttila,et al.  Analysis of gene expression during bud burst initiation in Norway spruce via ESTs from subtracted cDNA libraries , 2006, Tree Genetics & Genomes.

[71]  M. Newman,et al.  Defense-related genes expressed in Norway spruce roots after infection with the root rot pathogen Ceratobasidium bicorne (anamorph: Rhizoctonia sp.). , 2005, Tree physiology.

[72]  Jean YH Yang,et al.  Bioconductor: open software development for computational biology and bioinformatics , 2004, Genome Biology.

[73]  H. Solheim,et al.  Temporal and Spatial Profiles of Chitinase Expression by Norway Spruce in Response to Bark Colonization by Heterobasidion annosum , 2004, Applied and Environmental Microbiology.

[74]  H. Solheim,et al.  Induced responses to pathogen infection in Norway spruce phloem: changes in polyphenolic parenchyma cells, chalcone synthase transcript levels and peroxidase activity. , 2004, Tree physiology.

[75]  H. Ziegler,et al.  Seasonal variation in the monoterpenes in needles of Picea abies (L.) Karst. , 1990, Trees.

[76]  Diane M. Martin,et al.  Traumatic resin defense in Norway spruce (Picea abies): Methyl jasmonate-induced terpene synthase gene expression, and cDNA cloning and functional characterization of (+)-3-carene synthase , 2004, Plant Molecular Biology.

[77]  Ramesh Raina,et al.  Preexisting Systemic Acquired Resistance Suppresses Hypersensitive Response-Associated Cell Death in Arabidopsishrl1 Mutant1 , 2002, Plant Physiology.

[78]  S. Mayr,et al.  Photosynthesis in rust-infected adult Norway spruce in the field. , 2001, The New phytologist.

[79]  H. Bauer,et al.  Photosynthesis in Norway spruce seedlings infected by the needle rust Chrysomyxa rhododendri. , 2000, Tree physiology.

[80]  Hiroyuki Ogata,et al.  KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..

[81]  Thomas D. Schmittgen,et al.  Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2 2 DD C T Method , 2022 .

[82]  Supplemental Information 2: Kyoto Encyclopedia of genes and genomes. , 2022 .