Dynamic MRI reconstruction exploiting blind compressed sensing combined transform learning regularization

Abstract The goal of dynamic magnetic resonance imaging (dynamic MRI) is to visualize tissue properties and their local changes over time that are traceable in the MR signal. Compressed sensing enables the accurate recovery of images from highly under-sampled measurements by exploiting the sparsity of the images or image patches in a transform domain or dictionary. In this work, we focus on blind compressed sensing (BCS), where the underlying sparse signal model is a priori unknown, and propose a framework to simultaneously reconstruct the underlying image as well as the unknown model from highly under-sampled measurements. Specifically, in our model, the patches of the under-sampled images are approximately sparse in a transform domain. Transform learning that combines wavelet and gradient sparsity is considered as regularization in our model for dynamic MR images. The original complex problem is decomposed into several simpler subproblems, then each of the subproblems is efficiently solved with a variable splitting iterative scheme. The results of numerous experiments show that the proposed algorithm outperforms the state-of-the-art compressed sensing MRI algorithms and yields better reconstructions results.

[1]  Yoram Bresler,et al.  Efficient Blind Compressed Sensing Using Sparsifying Transforms with Convergence Guarantees and Application to Magnetic Resonance Imaging , 2015, SIAM J. Imaging Sci..

[2]  Yoram Bresler,et al.  Online Sparsifying Transform Learning— Part I: Algorithms , 2015, IEEE Journal of Selected Topics in Signal Processing.

[3]  Mathews Jacob,et al.  A variable splitting based algorithm for fast multi-coil blind compressed sensing MRI reconstruction , 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[4]  Mathews Jacob,et al.  A blind compressive sensing frame work for accelerated dynamic MRI , 2012, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI).

[5]  David Atkinson,et al.  Dynamic MR Image Reconstruction–Separation From Undersampled (${\bf k},t$)-Space via Low-Rank Plus Sparse Prior , 2014, IEEE Transactions on Medical Imaging.

[6]  V. Magnotta,et al.  Accelerated whole‐brain multi‐parameter mapping using blind compressed sensing , 2016, Magnetic resonance in medicine.

[7]  Yoram Bresler,et al.  Data-Driven Learning of a Union of Sparsifying Transforms Model for Blind Compressed Sensing , 2015, IEEE Transactions on Computational Imaging.

[8]  Junzhou Huang,et al.  Real time dynamic MRI by exploiting spatial and temporal sparsity. , 2016, Magnetic resonance imaging.

[9]  Mathews Jacob,et al.  A Fast Algorithm for Convolutional Structured Low-Rank Matrix Recovery , 2016, IEEE Transactions on Computational Imaging.

[10]  Mathews Jacob,et al.  Accelerated Dynamic MRI Exploiting Sparsity and Low-Rank Structure: k-t SLR , 2011, IEEE Transactions on Medical Imaging.

[11]  Mathews Jacob,et al.  Accelerated dynamic MRI using patch regularization for implicit motion compensation , 2017, Magnetic resonance in medicine.

[12]  Justin P. Haldar,et al.  Low-rank approximations for dynamic imaging , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[13]  Justin P. Haldar,et al.  Low rank matrix recovery for real-time cardiac MRI , 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[14]  Jeffrey A. Fessler,et al.  Low-Rank and Adaptive Sparse Signal (LASSI) Models for Highly Accelerated Dynamic Imaging , 2016, IEEE Transactions on Medical Imaging.

[15]  Yoram Bresler,et al.  Learning Sparsifying Transforms , 2013, IEEE Transactions on Signal Processing.

[16]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[17]  Ashraf A. Kassim,et al.  Multi-dimensional low rank plus sparse decomposition for reconstruction of under-sampled dynamic MRI , 2017, Pattern Recognit..

[18]  Yoram Bresler,et al.  Structured Overcomplete Sparsifying Transform Learning with Convergence Guarantees and Applications , 2015, International Journal of Computer Vision.

[19]  Junzhou Huang,et al.  Compressive Sensing MRI with Wavelet Tree Sparsity , 2012, NIPS.

[20]  Mathews Jacob,et al.  Blind Compressive Sensing Dynamic MRI , 2013, IEEE Transactions on Medical Imaging.

[21]  Zhong Chen,et al.  Undersampled MRI reconstruction with patch-based directional wavelets. , 2012, Magnetic resonance imaging.

[22]  Shiqian Ma,et al.  An efficient algorithm for compressed MR imaging using total variation and wavelets , 2008, 2008 IEEE Conference on Computer Vision and Pattern Recognition.

[23]  Zhong Chen,et al.  Compressed sensing MRI based on nonsubsampled contourlet transform , 2008, 2008 IEEE International Symposium on IT in Medicine and Education.

[24]  Yoram Bresler,et al.  Closed-form solutions within sparsifying transform learning , 2013, 2013 IEEE International Conference on Acoustics, Speech and Signal Processing.

[25]  Jong Chul Ye,et al.  k‐t FOCUSS: A general compressed sensing framework for high resolution dynamic MRI , 2009, Magnetic resonance in medicine.

[26]  Yuewan Luo,et al.  Dynamic MRI reconstruction from highly undersampled (k, t)-space data using weighted Schatten p-norm regularizer of tensor. , 2017, Magnetic resonance imaging.