Mechanistic research in aquatic toxicology: perspectives and future directions.

On the 30th anniversary of the journal, I provide a perspective on some of the questions and opportunities for new understanding that will interest aquatic toxicologists during the next 30 years. I focus on mechanisms of toxicity involving transcription factors, signalling pathways, and gene networks involved in toxic and adaptive responses in aquatic animals. Prominent questions address the value of a toxicity pathways approach in aquatic systems, issues involving extrapolation among species, identification of susceptibility genes and useful biomarkers of adverse effect, new emerging contaminants, the importance of epigenetic mechanisms, effects of multiple stressors, evolutionary toxicology, and the relative roles of technical and conceptual limitations to our understanding of chemical effects on aquatic systems.

[1]  S. Kennedy,et al.  The molecular basis for differential dioxin sensitivity in birds: role of the aryl hydrocarbon receptor. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[2]  S. Rogers,et al.  Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology , 2009, Molecular ecology.

[3]  C. A. Scholin,et al.  What are "ecogenomic sensors?" A review and thoughts for the future , 2009 .

[4]  Robert J. Olson,et al.  FIRST HARMFUL DINOPHYSIS (DINOPHYCEAE, DINOPHYSIALES) BLOOM IN THE U.S. IS REVEALED BY AUTOMATED IMAGING FLOW CYTOMETRY 1 , 2010 .

[5]  R. Rosenberg,et al.  Spreading Dead Zones and Consequences for Marine Ecosystems , 2008, Science.

[6]  J. Bailar,et al.  Toxicity Testing in the 21st Century: A Vision and a Strategy , 2010, Journal of toxicology and environmental health. Part B, Critical reviews.

[7]  John Postlethwait,et al.  Subfunction partitioning, the teleost radiation and the annotation of the human genome. , 2004, Trends in genetics : TIG.

[8]  Mingyao Li,et al.  Widespread RNA and DNA Sequence Differences in the Human Transcriptome , 2011, Science.

[9]  M. Hagberg Editorial , 2004 .

[10]  Andrey Alexeyenko,et al.  Dynamic Zebrafish Interactome Reveals Transcriptional Mechanisms of Dioxin Toxicity , 2010, PloS one.

[11]  S. Kennedy,et al.  Key amino acids in the aryl hydrocarbon receptor predict dioxin sensitivity in avian species. , 2008, Environmental science & technology.

[12]  A. Hudder,et al.  miRNAs: effectors of environmental influences on gene expression and disease. , 2008, Toxicological sciences : an official journal of the Society of Toxicology.

[13]  A. Komar SNPs, Silent But Not Invisible , 2007, Science.

[14]  A. Komar Genetics. SNPs, silent but not invisible. , 2007, Science.

[15]  Eric H. Davidson,et al.  Evolution of Gene Regulatory Networks Controlling Body Plan Development , 2011, Cell.

[16]  C. Wheat,et al.  INTEGRATING EVOLUTIONARY AND FUNCTIONAL APPROACHES TO INFER ADAPTATION AT SPECIFIC LOCI , 2010, Evolution; international journal of organic evolution.

[17]  M. Greenberg,et al.  Toxicity Testing in the 21st Century , 2009, Risk analysis : an official publication of the Society for Risk Analysis.

[18]  D Kriebel,et al.  On the need for a National (U.S.) research program to elucidate the potential risks to human health and the environment posed by contaminants of emerging concern. , 2011, Environmental science & technology.

[19]  Mark E. Hahn,et al.  Mechanistic Basis of Resistance to PCBs in Atlantic Tomcod from the Hudson River , 2011, Science.

[20]  E. Davidson Emerging properties of animal gene regulatory networks , 2010, Nature.

[21]  Matthew J. Jenny,et al.  Development of the morpholino gene knockdown technique in Fundulus heteroclitus: a tool for studying molecular mechanisms in an established environmental model. , 2008, Aquatic toxicology.

[22]  F. Collins,et al.  Transforming Environmental Health Protection , 2008, Science.

[23]  R. Jirtle,et al.  Environmental epigenomics and disease susceptibility , 2007, Nature Reviews Genetics.

[24]  M. Scally,et al.  The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome. , 2006, Developmental biology.

[25]  A. Whitehead,et al.  Comparative transcriptomics implicates mechanisms of evolved pollution tolerance in a killifish population , 2010, Molecular ecology.

[26]  Lixin Yang,et al.  Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo , 2007, Genome Biology.

[27]  Stephen W. Edwards,et al.  A transcriptomics-based biological framework for studying mechanisms of endocrine disruption in small fish species. , 2010, Aquatic toxicology.

[28]  Feng Zhang,et al.  Selection-Free Zinc-Finger Nuclease Engineering by Context-Dependent Assembly (CoDA) , 2010, Nature Methods.

[29]  G. Hofmann,et al.  Living in the now: physiological mechanisms to tolerate a rapidly changing environment. , 2010, Annual review of physiology.

[30]  Stephen C. Ekker,et al.  in vivo protein trapping produces a functional expression codex of the vertebrate proteome , 2011, Nature Methods.

[31]  J. Bickham The four cornerstones of Evolutionary Toxicology , 2011, Ecotoxicology.

[32]  Zachary D. Smith,et al.  Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses , 2009 .

[33]  Richard B. Gaines,et al.  Resolving the unresolved complex mixture in petroleum-contaminated sediments. , 2003, Environmental science & technology.