Systematic validation of candidate reference genes for qRT-PCR normalization under iron deficiency in Arabidopsis

[1]  H. Koiwa,et al.  Loss of Function of Arabidopsis C-Terminal Domain Phosphatase-Like1 Activates Iron Deficiency Responses at the Transcriptional Level1[W][OA] , 2012, Plant Physiology.

[2]  C. Curie,et al.  Arabidopsis bHLH100 and bHLH101 Control Iron Homeostasis via a FIT-Independent Pathway , 2012, PloS one.

[3]  W. Shen,et al.  Haem oxygenase-1 is involved in sali ylic acid-induced alleviation of oxidative stress due to cadmium stress in Medicago sativa , 2012 .

[4]  Michael J. Haydon,et al.  Vacuolar Nicotianamine Has Critical and Distinct Roles under Iron Deficiency and for Zinc Sequestration in Arabidopsis[C][W] , 2012, Plant Cell.

[5]  Xiaowen Zhang,et al.  Validation of reference genes for gene expression studies in peanut by quantitative real-time RT-PCR , 2012, Molecular Genetics and Genomics.

[6]  Juan Du,et al.  Co-Overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-Enhanced Cadmium Tolerance via Increased Cadmium Sequestration in Roots and Improved Iron Homeostasis of Shoots1[W] , 2011, Plant Physiology.

[7]  R. Stein,et al.  Use of natural variation reveals core genes in the transcriptome of iron-deficient Arabidopsis thaliana roots , 2011, Journal of experimental botany.

[8]  P. Bauer,et al.  Posttranslational Regulation of the Iron Deficiency Basic Helix-Loop-Helix Transcription Factor FIT Is Affected by Iron and Nitric Oxide1[C][W][OA] , 2011, Plant Physiology.

[9]  C. Curie,et al.  Proteasome-mediated turnover of the transcriptional activator FIT is required for plant iron-deficiency responses. , 2011, The Plant journal : for cell and molecular biology.

[10]  P. Genschik,et al.  Interaction between the bHLH Transcription Factor FIT and ETHYLENE INSENSITIVE3/ETHYLENE INSENSITIVE3-LIKE1 Reveals Molecular Linkage between the Regulation of Iron Acquisition and Ethylene Signaling in Arabidopsis[C][W] , 2011, Plant Cell.

[11]  M. J. García,et al.  Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis. , 2010, Journal of experimental botany.

[12]  Wei Wei Chen,et al.  Nitric Oxide Acts Downstream of Auxin to Trigger Root Ferric-Chelate Reductase Activity in Response to Iron Deficiency in Arabidopsis1[C][W][OA] , 2010, Plant Physiology.

[13]  Wolfgang Busch,et al.  The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots[W][OA] , 2010, Plant Cell.

[14]  M. Gerstein,et al.  Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays , 2010, BMC Genomics.

[15]  W. Schmidt,et al.  Transcriptional Profiling of the Arabidopsis Iron Deficiency Response Reveals Conserved Transition Metal Homeostasis Networks1[C][W] , 2010, Plant Physiology.

[16]  Matthew D. Young,et al.  Gene ontology analysis for RNA-seq: accounting for selection bias , 2010, Genome Biology.

[17]  C. Curie,et al.  Increased sensitivity to iron deficiency in Arabidopsis thaliana overaccumulating nicotianamine , 2009, Journal of experimental botany.

[18]  E. Walker,et al.  Time to pump iron: iron-deficiency-signaling mechanisms of higher plants. , 2008, Current opinion in plant biology.

[19]  M. Stephens,et al.  RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. , 2008, Genome research.

[20]  T. Moritz,et al.  The lack of a systematic validation of reference genes: a serious pitfall undervalued in reverse transcription-polymerase chain reaction (RT-PCR) analysis in plants. , 2008, Plant biotechnology journal.

[21]  O. Van Wuytswinkel,et al.  Towards a Systematic Validation of References in Real-Time RT-PCR , 2008, The Plant Cell Online.

[22]  Daniel L. Mace,et al.  Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress , 2008, Science.

[23]  J. Vangronsveld,et al.  Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations , 2008, Planta.

[24]  O. Nilsson,et al.  The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle. , 2007, The Plant journal : for cell and molecular biology.

[25]  S. Davis.  Faculty Opinions recommendation of Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. , 2006 .

[26]  Kiana Toufighi,et al.  The Botany Array Resource: E-northerns, Expression Angling, and Promoter Analyses , 2022 .

[27]  K Dheda,et al.  Real-time RT-PCR normalisation; strategies and considerations , 2005, Genes and Immunity.

[28]  S A Bustin,et al.  Quantitative real-time RT-PCR--a perspective. , 2005, Journal of molecular endocrinology.

[29]  F. Nilsen,et al.  Relative transcript quantification by Quantitative PCR: Roughly right or precisely wrong? , 2005, BMC Molecular Biology.

[30]  M. Guerinot,et al.  The Essential Basic Helix-Loop-Helix Protein FIT1 Is Required for the Iron Deficiency Response , 2004, The Plant Cell Online.

[31]  Claus Lindbjerg Andersen,et al.  Normalization of Real-Time Quantitative Reverse Transcription-PCR Data: A Model-Based Variance Estimation Approach to Identify Genes Suited for Normalization, Applied to Bladder and Colon Cancer Data Sets , 2004, Cancer Research.

[32]  B. Charrier,et al.  Real-time PCR: what relevance to plant studies? , 2004, Journal of experimental botany.

[33]  M. Pfaffl,et al.  Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations , 2004, Biotechnology Letters.

[34]  W. Schmidt.  Iron solutions: acquisition strategies and signaling pathways in plants. , 2003, Trends in plant science.

[35]  F. Speleman,et al.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes , 2002, Genome Biology.

[36]  C. Curie,et al.  IRT1, an Arabidopsis Transporter Essential for Iron Uptake from the Soil and for Plant Growth Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.001388. , 2002, The Plant Cell Online.

[37]  A. Polle,et al.  Plant responses to abiotic stresses: heavy metal-induced oxidative stress and protection by mycorrhization. , 2002, Journal of experimental botany.

[38]  G. Bassel,et al.  Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds. , 2012, Plant & cell physiology.

[39]  P. Bauer,et al.  Fitting into the harsh reality: regulation of iron-deficiency responses in dicotyledonous plants. , 2012, Molecular plant.