Diversifying selection and concerted evolution of a type IV secretion system in Bartonella.
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Mikael Thollesson | Björn Nystedt | S. Andersson | B. Nystedt | A. C. Frank | Siv G E Andersson | M. Thollesson | A Carolin Frank | Björn Nystedt
[1] C. Mulligan,et al. Molecular evolution of the tprC, D, I, K, G, and J genes in the pathogenic genus Treponema. , 2006, Molecular biology and evolution.
[2] H. Ogata,et al. Phylogenetic classification of Bartonella species by comparing groEL sequences. , 2002, International journal of systematic and evolutionary microbiology.
[3] L. Vielva,et al. Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution. , 2006, FEMS microbiology reviews.
[4] David S Guttman,et al. Terminal Reassortment Drives the Quantum Evolution of Type III Effectors in Bacterial Pathogens , 2006, PLoS pathogens.
[5] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[6] E. Cascales,et al. The versatile bacterial type IV secretion systems , 2003, Nature Reviews Microbiology.
[7] Erik L. L. Sonnhammer,et al. Kalign – an accurate and fast multiple sequence alignment algorithm , 2005, BMC Bioinformatics.
[8] Xue-Rong Zhou,et al. Dimerization of the Agrobacterium tumefaciens VirB4 ATPase and the effect of ATP‐binding cassette mutations on the assembly and function of the T‐DNA transporter , 1999, Molecular microbiology.
[9] M. Simon,et al. Transposition of structural genes to an expression sequence on a linear plasmid causes antigenic variation in the bacterium Borrelia hermsii , 1985, Nature.
[10] F. Cohen,et al. Co-evolution of proteins with their interaction partners. , 2000, Journal of molecular biology.
[11] David L. Robertson,et al. Specificity in protein interactions and its relationship with sequence diversity and coevolution , 2007, Proceedings of the National Academy of Sciences.
[12] E. Cascales,et al. Structural and dynamic properties of bacterial Type IV secretion systems (Review) , 2005, Molecular membrane biology.
[13] G. Waksman,et al. Structural and functional characterization of the VirB5 protein from the type IV secretion system encoded by the conjugative plasmid pKM101 , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[14] S. Andersson,et al. Genome Rearrangements, Deletions, and Amplifications in the Natural Population of Bartonella henselae , 2006, Journal of bacteriology.
[15] K. Crandall,et al. Evaluation of methods for detecting recombination from DNA sequences: Computer simulations , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[16] D. Liao. Gene Conversion Drives Within Genic Sequences: Concerted Evolution of Ribosomal RNA Genes in Bacteria and Archaea , 2000, Journal of Molecular Evolution.
[17] K. Brayton,et al. Antigenic variation of Anaplasma marginale msp2 occurs by combinatorial gene conversion , 2002, Molecular microbiology.
[18] D. Conway,et al. Evidence for diversifying selection on erythrocyte-binding antigens of Plasmodium falciparum and P. vivax. , 2003, Genetics.
[19] C. Baron,et al. Detergent extraction identifies different VirB protein subassemblies of the type IV secretion machinery in the membranes of Agrobacterium tumefaciens , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[20] Ari Löytynoja,et al. SOAP, cleaning multiple alignments from unstable blocks , 2001, Bioinform..
[21] R. Ward,et al. Natural selection on the erythrocyte surface. , 2002, Molecular biology and evolution.
[22] S. Andersson,et al. Functional divergence and horizontal transfer of type IV secretion systems. , 2005, Molecular biology and evolution.
[23] D. Guttman,et al. Diversifying selection drives the evolution of the type III secretion system pilus of Pseudomonas syringae. , 2006, Molecular biology and evolution.
[24] David Posada,et al. MODELTEST: testing the model of DNA substitution , 1998, Bioinform..
[25] E. Karlberg,et al. The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[26] T. Meyer,et al. The repertoire of silent pilus genes in neisseria gonorrhoeae: Evidence for gene conversion , 1986, Cell.
[27] A. Varki,et al. Evolutionary considerations in relating oligosaccharide diversity to biological function. , 1999, Glycobiology.
[28] W. Li,et al. Statistical tests of neutrality of mutations. , 1993, Genetics.
[29] S. Sawyer. Statistical tests for detecting gene conversion. , 1989, Molecular biology and evolution.
[30] Jyl S Matson,et al. Immunization of mice with YscF provides protection from Yersinia pestis infections , 2005, BMC Microbiology.
[31] John Maynard Smith,et al. Analyzing the mosaic structure of genes , 1992, Journal of Molecular Evolution.
[32] J. M. Smith,et al. Detecting recombination from gene trees. , 1998, Molecular biology and evolution.
[33] Mats E. Pettersson,et al. The Amplification Model for Adaptive Mutation , 2005, Genetics.
[34] Z. Weng,et al. Structure, function, and evolution of transient and obligate protein-protein interactions. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[35] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[36] E. Koonin,et al. Selection in the evolution of gene duplications , 2002, Genome Biology.
[37] D. Hughes,et al. Homologous recombination between the tuf genes of Salmonella typhimurium. , 1996, Journal of molecular biology.
[38] David Romero,et al. Gene conversion and concerted evolution in bacterial genomes. , 2005, FEMS microbiology reviews.
[39] S. Norris,et al. Genetic Variation of the Borrelia burgdorferi Gene vlsE Involves Cassette-Specific, Segmental Gene Conversion , 1998, Infection and Immunity.
[40] P. Christie,et al. Role of Agrobacterium VirB11 ATPase in T-Pilus Assembly and Substrate Selection , 2001, Journal of bacteriology.
[41] Austen R. D. Ganley,et al. Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. , 2007, Genome research.
[42] J. Roth,et al. Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon. , 1998, Science.
[43] Erik L. L. Sonnhammer,et al. An HMM posterior decoder for sequence feature prediction that includes homology information , 2005, ISMB.
[44] J. Haynes,et al. A malaria invasion receptor, the 175-kilodalton erythrocyte binding antigen of Plasmodium falciparum recognizes the terminal Neu5Ac(alpha 2- 3)Gal- sequences of glycophorin A , 1992, The Journal of cell biology.
[45] David S Guttman,et al. Type III Effector Diversification via Both Pathoadaptation and Horizontal Transfer in Response to a Coevolutionary Arms Race , 2006, PLoS genetics.
[46] Z. Yang,et al. Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. , 2000, Molecular biology and evolution.
[47] Darren Martin,et al. RDP: detection of recombination amongst aligned sequences , 2000, Bioinform..
[48] M. So,et al. Intragenic recombination leads to pilus antigenic variation in Neisseria gonorrhoeae , 1985, Nature.
[49] S. Sawyer,et al. Possible emergence of new geminiviruses by frequent recombination. , 1999, Virology.
[50] H. Ton-That,et al. Type III Pilus of Corynebacteria: Pilus Length Is Determined by the Level of Its Major Pilin Subunit , 2006, Journal of Bacteriology.
[51] R. Campbell,et al. Co-evolution of ligand-receptor pairs , 1994, Nature.
[52] Kelly A Brayton,et al. Complete genome sequencing of Anaplasma marginale reveals that the surface is skewed to two superfamilies of outer membrane proteins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[53] F. Tajima. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.
[54] D. Gevers,et al. Gene duplication and biased functional retention of paralogs in bacterial genomes. , 2004, Trends in microbiology.
[55] T. Mikkelsen,et al. System-wide Genomic and Biochemical Comparisons of Sialic Acid Biology Among Primates and Rodents , 2006, Journal of Biological Chemistry.
[56] K. Strimmer,et al. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics , 2004, BMC Evolutionary Biology.
[57] Claudio Donati,et al. Protein Homology Network Families Reveal Step-Wise Diversification of Type III and Type IV Secretion Systems , 2006, PLoS Comput. Biol..
[58] G. Schröder,et al. Virulence-associated type IV secretion systems of Bartonella. , 2005, Trends in microbiology.
[59] C. Dehio,et al. A bacterial conjugation machinery recruited for pathogenesis , 2003, Molecular microbiology.
[60] C. Lanz,et al. Invasion and Persistent Intracellular Colonization of Erythrocytes , 2001, The Journal of experimental medicine.
[61] C. Chitnis,et al. Receptor and ligand domains for invasion of erythrocytes by Plasmodium falciparum. , 1994, Science.
[62] Ziheng Yang,et al. Phylogenetic Analysis by Maximum Likelihood (PAML) , 2002 .
[63] E. Cascales,et al. Definition of a Bacterial Type IV Secretion Pathway for a DNA Substrate , 2004, Science.
[64] P. Markham,et al. A novel mechanism for control of antigenic variation in the haemagglutinin gene family of Mycoplasma synoviae , 2000, Molecular microbiology.