The gut microbiota regulates white adipose tissue inflammation and obesity via a family of microRNAs

Tryptophan-derived metabolites from the gut microbiota control miR-181 expression in mouse white adipocytes to regulate metabolism and inflammation. A gut-fat axis Whether and how the gut microbiome affects adipose tissue homeostasis is an area of current investigation. Virtue et al. showed that a high-fat diet in mice led to the activation of miR-181 in white adipose tissue (WAT) and subsequent obesity, insulin resistance, and WAT inflammation. The authors tied the increased expression of this microRNA to a reduction in circulating microbiota-derived metabolites produced by tryptophan metabolism in the gut and confirmed this link by administering indole to mice. miR-181 was increased in WAT and indole was reduced in the plasma of obese humans, suggesting the potential relevance of this axis to human disease. The gut microbiota is a key environmental determinant of mammalian metabolism. Regulation of white adipose tissue (WAT) by the gut microbiota is a process critical to maintaining metabolic fitness, and gut dysbiosis can contribute to the development of obesity and insulin resistance (IR). However, how the gut microbiota regulates WAT function remains largely unknown. Here, we show that tryptophan-derived metabolites produced by the gut microbiota controlled the expression of the miR-181 family in white adipocytes in mice to regulate energy expenditure and insulin sensitivity. Moreover, dysregulation of the gut microbiota–miR-181 axis was required for the development of obesity, IR, and WAT inflammation in mice. Our results indicate that regulation of miR-181 in WAT by gut microbiota–derived metabolites is a central mechanism by which host metabolism is tuned in response to dietary and environmental changes. As we also found that MIR-181 expression in WAT and the plasma abundance of tryptophan-derived metabolites were dysregulated in a cohort of obese human children, the MIR-181 family may represent a potential therapeutic target to modulate WAT function in the context of obesity.

[1]  E. Elinav,et al.  Interaction between microbiota and immunity in health and disease , 2020, Cell Research.

[2]  Gonzalo Colmenarejo,et al.  Genetic Polymorphisms, Mediterranean Diet and Microbiota-Associated Urolithin Metabotypes can Predict Obesity in Childhood-Adolescence , 2020, Scientific Reports.

[3]  Ronan M. T. Fleming,et al.  Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome , 2020, Molecular systems biology.

[4]  Alka A. Potdar,et al.  Reduced expression of COVID-19 host receptor, ACE2 is associated with small bowel inflammation, more severe disease, and response to anti-TNF therapy in Crohn’s disease , 2020, medRxiv.

[5]  F. Mattivi,et al.  Tryptophan Metabolic Pathways Are Altered in Obesity and Are Associated With Systemic Inflammation , 2020, Frontiers in Immunology.

[6]  Y. Macotela Faculty Opinions recommendation of The gut microbiota regulates white adipose tissue inflammation and obesity via a family of microRNAs. , 2019, Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature.

[7]  Kyongbum Lee,et al.  Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages , 2018, Cell reports.

[8]  J. Romijn,et al.  Methods for quantifying adipose tissue insulin resistance in overweight/obese humans , 2017, International Journal of Obesity.

[9]  Eran Segal,et al.  Persistent microbiome alterations modulate the rate of post-dieting weight regain , 2016, Nature.

[10]  J. Rabinowitz,et al.  Physiological Suppression of Lipotoxic Liver Damage by Complementary Actions of HDAC3 and SCAP/SREBP. , 2016, Cell metabolism.

[11]  A. Farcomeni,et al.  A Role for Timp3 in Microbiota-Driven Hepatic Steatosis and Metabolic Dysfunction. , 2016, Cell reports.

[12]  A. Farcomeni,et al.  Erratum: A Role for Timp3 in Microbiota-Driven Hepatic Steatosis and Metabolic Dysfunction (Cell Reports (2016) 16(3) (731–743) (S2211124716307677) (10.1016/j.celrep.2016.06.027)) , 2016 .

[13]  W. Malaisse,et al.  Anoctamin 1 (Ano1) is required for glucose-induced membrane potential oscillations and insulin secretion by murine β-cells , 2015, Pflügers Archiv - European Journal of Physiology.

[14]  P. Chambon,et al.  Shifting the feeding of mice to the rest phase creates metabolic alterations, which, on their own, shift the peripheral circadian clocks by 12 hours , 2015, Proceedings of the National Academy of Sciences.

[15]  D. Colin,et al.  Microbiota depletion promotes browning of white adipose tissue and reduces obesity , 2015, Nature Medicine.

[16]  Jacqueline K. White,et al.  MacroH2A1 isoforms are associated with epigenetic markers for activation of lipogenic genes in fat‐induced steatosis , 2015, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[17]  Jonathan R. Brestoff,et al.  Immune Regulation of Metabolic Homeostasis in Health and Disease , 2015, Cell.

[18]  K. Kristiansen,et al.  Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling , 2015, BMC Genomics.

[19]  V. Dixit,et al.  Adipose tissue as an immunological organ , 2015, Obesity.

[20]  F. Bäckhed,et al.  Microbial modulation of insulin sensitivity. , 2014, Cell metabolism.

[21]  A. Fusco,et al.  CBX7 gene expression plays a negative role in adipocyte cell growth and differentiation , 2014, Biology Open.

[22]  M. Luijendijk,et al.  The obesity‐associated gene Negr1 regulates aspects of energy balance in rat hypothalamic areas , 2014, Physiological reports.

[23]  J. Skelton,et al.  Prevalence and trends in obesity and severe obesity among children in the United States, 1999-2012. , 2014, JAMA pediatrics.

[24]  A. Fusco,et al.  CBX 7 gene expression plays a negative role in adipocyte cell growth and differentiation , 2014 .

[25]  Adam Williams,et al.  The microRNA miR-181 is a critical cellular metabolic rheostat essential for NKT cell ontogenesis and lymphocyte development and homeostasis. , 2013, Immunity.

[26]  J. Orr,et al.  Isolation of adipose tissue immune cells. , 2013, Journal of visualized experiments : JoVE.

[27]  R. Locksley,et al.  Innate lymphoid type 2 cells sustain visceral adipose tissue eosinophils and alternatively activated macrophages , 2013, The Journal of experimental medicine.

[28]  M. J. Saad,et al.  The Role of Gut Microbiota on Insulin Resistance , 2013, Nutrients.

[29]  R. Flavell,et al.  miR-181 and metabolic regulation in the immune system. , 2013, Cold Spring Harbor symposia on quantitative biology.

[30]  Roderic Guigó,et al.  The GEM mapper: fast, accurate and versatile alignment by filtration , 2012, Nature Methods.

[31]  Robert V Farese,et al.  A guide to analysis of mouse energy metabolism , 2011, Nature Methods.

[32]  M. Zavolan,et al.  MicroRNAs 103 and 107 regulate insulin sensitivity , 2011, Nature.

[33]  K. Moore,et al.  miR-33a/b contribute to the regulation of fatty acid metabolism and insulin signaling , 2011, Proceedings of the National Academy of Sciences.

[34]  R. Locksley,et al.  Eosinophils Sustain Adipose Alternatively Activated Macrophages Associated with Glucose Homeostasis , 2011, Science.

[35]  Brian J. Bennett,et al.  Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease , 2011, Nature.

[36]  Joshua D Rabinowitz,et al.  Metabolomic analysis and visualization engine for LC-MS data. , 2010, Analytical chemistry.

[37]  Yaron Ilan,et al.  Induction of regulatory T cells decreases adipose inflammation and alleviates insulin resistance in ob/ob mice , 2010, Proceedings of the National Academy of Sciences.

[38]  Daniel Amador-Noguez,et al.  Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer. , 2010, Analytical chemistry.

[39]  C. Glass,et al.  Macrophages, inflammation, and insulin resistance. , 2010, Annual review of physiology.

[40]  M. Ruth Normalization of obesity-associated insulin resistance through immunotherapy , 2010 .

[41]  J. Zieleński,et al.  Normalization of Obesity-Associated Insulin Resistance through Immunotherapy: CD4+ T Cells Control Glucose Homeostasis , 2009, Nature Medicine.

[42]  W. R. Wikoff,et al.  Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites , 2009, Proceedings of the National Academy of Sciences.

[43]  F. Visseren,et al.  Adipose tissue dysfunction in obesity, diabetes, and vascular diseases. , 2008, European heart journal.

[44]  C. Kahn,et al.  Developmental Origin of Fat: Tracking Obesity to Its Source , 2007, Cell.

[45]  Elaine Holmes,et al.  A top-down systems biology view of microbiome-mammalian metabolic interactions in a mouse model , 2007, Molecular systems biology.

[46]  Saptarsi M. Haldar,et al.  Regulation of gluconeogenesis by Krüppel-like factor 15. , 2007, Cell metabolism.

[47]  Jeffrey I. Gordon,et al.  Mechanisms underlying the resistance to diet-induced obesity in germ-free mice , 2007, Proceedings of the National Academy of Sciences.

[48]  A. Saltiel,et al.  Obesity induces a phenotypic switch in adipose tissue macrophage polarization. , 2007, The Journal of clinical investigation.

[49]  G. Hotamisligil,et al.  Inflammation and metabolic disorders , 2006, Nature.

[50]  Herbert Tilg,et al.  Adipocytokines: mediators linking adipose tissue, inflammation and immunity , 2006, Nature Reviews Immunology.

[51]  T. Kodama,et al.  SOX6 Attenuates Glucose-stimulated Insulin Secretion by Repressing PDX1 Transcriptional Actvity and Is Down-regulated in Hyperinsulinemic Obese Mice* , 2005, Journal of Biological Chemistry.

[52]  Ting Wang,et al.  The gut microbiota as an environmental factor that regulates fat storage. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[53]  D. Bartel,et al.  Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs , 2004, Nature Reviews Genetics.

[54]  M. Desai,et al.  Obesity is associated with macrophage accumulation in adipose tissue. , 2003, The Journal of clinical investigation.

[55]  C. Kahn,et al.  Adipose tissue selective insulin receptor knockout protects against obesity and obesity-related glucose intolerance. , 2002, Developmental cell.

[56]  E. Lai Micro RNAs are complementary to 3′ UTR sequence motifs that mediate negative post-transcriptional regulation , 2002, Nature Genetics.

[57]  G. Iwamoto,et al.  Increased adipose tissue in male and female estrogen receptor-α knockout mice , 2000 .

[58]  G. Iwamoto,et al.  Increased adipose tissue in male and female estrogen receptor-alpha knockout mice. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[59]  G. Shulman,et al.  Disruption of IRS-2 causes type 2 diabetes in mice , 1998, Nature.

[60]  W. Willett,et al.  Energy intake and other determinants of relative weight. , 1988, The American journal of clinical nutrition.