De novo design of a single-chain diphenylporphyrin metalloprotein.

We describe the computational design of a single-chain four-helix bundle that noncovalently self-assembles with fully synthetic non-natural porphyrin cofactors. With this strategy, both the electronic structure of the cofactor as well as its protein environment may be varied to explore and modulate the functional and photophysical properties of the assembly. Solution characterization (NMR, UV-vis) of the protein showed that it bound with high specificity to the desired cofactors, suggesting that a uniquely structured protein and well-defined site had indeed been created. This provides a genetically expressed single-chain protein scaffold that will allow highly facile, flexible, and asymmetric variations to enable selective incorporation of different cofactors, surface-immobilization, and introduction of spectroscopic probes.

[1]  E. Kandel,et al.  Proceedings of the National Academy of Sciences of the United States of America. Annual subject and author indexes. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[2]  Stephen F. Betz,et al.  De novo protein design: from molten globules to native-like states , 1993 .

[3]  R. Williams,et al.  Journal of American Chemical Society , 1979 .

[4]  J. Kendall Inorganic Chemistry , 1944, Nature.

[5]  J. C. Bevington,et al.  Chemical Reviews , 1970, Nature.

[6]  E. B. Wilson PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES. , 1919, Science.

[7]  R. Rosenfeld Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.

[8]  Journal of Chemical Physics , 1932, Nature.

[9]  Eric F Darve,et al.  Author ' s personal copy A hybrid method for the parallel computation of Green ’ s functions , 2009 .

[10]  Journal of Molecular Biology , 1959, Nature.

[11]  T. Pollard,et al.  Annual review of biophysics and biomolecular structure , 1992 .

[12]  F. Young Biochemistry , 1955, The Indian Medical Gazette.

[13]  E. F. ARMSTRONG,et al.  Annual Review of Biochemistry , 1944, Nature.