Crystal Structure of the Lactose Operon Repressor and Its Complexes with DNA and Inducer

The lac operon of Escherichia coli is the paradigm for gene regulation. Its key component is the lac repressor, a product of the lacI gene. The three-dimensional structures of the intact lac repressor, the lac repressor bound to the gratuitous inducer isopropyl-β-D-1-thiogalactoside (IPTG) and the lac repressor complexed with a 21-base pair symmetric operator DNA have been determined. These three structures show the conformation of the molecule in both the induced and repressed states and provide a framework for understanding a wealth of biochemical and genetic information. The DNA sequence of the lac operon has three lac repressor recognition sites in a stretch of 500 base pairs. The crystallographic structure of the complex with DNA suggests that the tetrameric repressor functions synergistically with catabolite gene activator protein (CAP) and participates in the quaternary formation of repression loops in which one tetrameric repressor interacts simultaneously with two sites on the genomic DNA.

[1]  J. Monod,et al.  Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.

[2]  Jacques Monod,et al.  On the Regulation of Gene Activity , 1961 .

[3]  J. Changeux,et al.  Allosteric proteins and cellular control systems. , 1963, Journal of molecular biology.

[4]  H. Watson,et al.  Structure of Hæmoglobin : An X-ray Examination of Reduced Horse Hæmoglobin , 1964, Nature.

[5]  K. Wallenfels,et al.  SPECIFICITY OF THE INDUCTION OF THE ENZYMES OF THE LAC OPERON IN ESCHERICHIA COLI. , 1964, Journal of molecular biology.

[6]  J. Monod,et al.  [ROLE OF LACTOSE AND ITS METABOLIC PRODUCTS IN THE INDUCTION OF THE LACTOSE OPERON IN ESCHERICHIA COLI]. , 1965, Biochimica et biophysica acta.

[7]  J. Monod,et al.  Rôle du lactose et de ses produits métaboliques dans l'induction de l'opéron lactose chez Escherichia coli , 1965 .

[8]  W. Gilbert,et al.  ISOLATION OF THE LAC REPRESSOR , 1966, Proceedings of the National Academy of Sciences of the United States of America.

[9]  A. Riggs,et al.  The lac repressor-operator interaction. 3. Kinetic studies. , 1970, Journal of molecular biology.

[10]  A. Riggs,et al.  The lac represser-operator interaction , 1970 .

[11]  J. Beckwith,et al.  Mechanism of activation of catabolite-sensitive genes: a positive control system. , 1970, Proceedings of the National Academy of Sciences of the United States of America.

[12]  S. Bourgeois,et al.  lac Repressor-operator interaction. VI. The natural inducer of the lac operon. , 1972, Journal of molecular biology.

[13]  W. Gilbert,et al.  The nucleotide sequence of the lac operator. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[14]  J. Files,et al.  Lac repressor. Specific proteolytic destruction of the NH 2 -terminal region and loss of the deoxyribonucleic acid-binding activity. , 1973, Journal of Biological Chemistry.

[15]  K. Beyreuther,et al.  The amino-acid sequence of lac repressor. , 1973, Proceedings of the National Academy of Sciences of the United States of America.

[16]  J. Miller,et al.  Mutations affecting the quaternary structure of the lac repressor. , 1976, The Journal of biological chemistry.

[17]  P. Farabaugh Sequence of the lacI gene , 1978, Nature.

[18]  K. Weber,et al.  Escherichia coli lactose repressor Isolation of two different homogeneous headpieces and the existence of a hinge region between residues 50 and 60 in the repressor molecule , 1978, FEBS letters.

[19]  David J. Galas,et al.  The interaction of RNA polymerase and lac repressor with the lac control region , 1979, Nucleic Acids Res..

[20]  O. Jardetzky,et al.  Differential mobility of the N-terminal headpiece in the lac-repressor protein. , 1979, Journal of molecular biology.

[21]  J H Miller,et al.  Genetic studies of the lac repressor. IX. Generation of altered proteins by the suppression of nonsence mutations. , 1979, Journal of molecular biology.

[22]  M. Caruthers Deciphering the protein-DNA recognition code , 1980 .

[23]  Walter Gilbert,et al.  E. coli RNA polymerase interacts homologously with two different promoters , 1980, Cell.

[24]  J. Miller,et al.  Genetic assignment of resonances in the NMR spectrum of a protein: lac repressor. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[25]  Eli Ginzberg,et al.  The Service Sector of the U.S. Economy , 1981 .

[26]  Direct measurement of DNA unwinding angle in specific interaction between lac operator and repressor. , 1983, Cold Spring Harbor symposia on quantitative biology.

[27]  J. Sadler,et al.  A perfectly symmetric lac operator binds the lac repressor very tightly. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[28]  B. Müller-Hill,et al.  Possible ideal lac operator: Escherichia coli lac operator-like sequences from eukaryotic genomes lack the central G X C pair. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[29]  J. Miller,et al.  Genetic studies of the lac repressor. XII. Amino acid replacements in the DNA binding domain of the Escherichia coli lac repressor. , 1984, Journal of molecular biology.

[30]  M C Mossing,et al.  Upstream operators enhance repression of the lac promoter. , 1986, Science.

[31]  J L Betz,et al.  Cloning and characterization of several dominant-negative and tight-binding mutants of lac repressor. , 1986, Gene.

[32]  Donald M. Crothers,et al.  Lac repressor is a transient gene-activating protein , 1987, Cell.

[33]  J. Pflugrath,et al.  Crystal orientation and X-ray pattern prediction routines for area-detector diffractometer systems in macromolecular crystallography , 1987 .

[34]  M. Karplus,et al.  Crystallographic R Factor Refinement by Molecular Dynamics , 1987, Science.

[35]  J. Gralla,et al.  Dual mechanism of repression at a distance in the lac operon. , 1988, Proceedings of the National Academy of Sciences of the United States of America.

[36]  M C Mossing,et al.  Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process. , 1988, Biochemistry.

[37]  Wolfgang Kabsch,et al.  Evaluation of Single-Crystal X-ray Diffraction Data from a Position-Sensitive Detector , 1988 .

[38]  J. Sack,et al.  CHAIN — A crystallographic modeling program , 1988 .

[39]  B. Müller-Hill,et al.  The three operators of the lac operon cooperate in repression. , 1990, The EMBO journal.

[40]  B. Müller-Hill,et al.  lac repressor forms stable loops in vitro with supercoiled wild-type lac DNA containing all three natural lac operators. , 1990, Journal of molecular biology.

[41]  M. Fried,et al.  Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter. , 1990, Journal of molecular biology.

[42]  M. Lewis,et al.  lac repressor: crystallization of intact tetramer and its complexes with inducer and operator DNA. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[43]  K. Matthews,et al.  Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy. , 1990, Biochemistry.

[44]  Characterization of mutations in oligomerization domain of Lac repressor protein. , 1991, The Journal of biological chemistry.

[45]  S. Alberti,et al.  Dimer-to-tetramer assembly of Lac repressor involves a leucine heptad repeat. , 1991, The New biologist.

[46]  M. Brenowitz,et al.  Stability of a Lac repressor mediated "looped complex". , 1991, Biochemistry.

[47]  T. Steitz,et al.  Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees , 1991, Science.

[48]  S. Harrison,et al.  A structural taxonomy of DNA-binding domains , 1991, Nature.

[49]  P. Kraulis A program to produce both detailed and schematic plots of protein structures , 1991 .

[50]  K. Matthews,et al.  Evidence for leucine zipper motif in lactose repressor protein. , 1991, The Journal of biological chemistry.

[51]  B. Müller-Hill,et al.  How Lac repressor finds lac operator in vitro. , 1992, Journal of molecular biology.

[52]  S. Adhya,et al.  A family of bacterial regulators homologous to Gal and Lac repressors. , 1992, The Journal of biological chemistry.

[53]  S. Mowbray,et al.  1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli. , 1992, Journal of molecular biology.

[54]  K. Matthews,et al.  Lysine 84 is at the subunit interface of lac repressor protein. , 1993, The Journal of biological chemistry.

[55]  V. P. Chuprina,et al.  Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics. , 1994, Journal of Molecular Biology.

[56]  Isomorphous binding of mercury-substituted thiosaccharides to pertussis toxin crystals yields crystallographic phases. , 1994, Acta crystallographica. Section D, Biological crystallography.

[57]  J. Chen,et al.  Subunit dissociation affects DNA binding in a dimeric lac repressor produced by C-terminal deletion. , 1994, Biochemistry.

[58]  J. Chen,et al.  Wild-type operator binding and altered cooperativity for inducer binding of lac repressor dimer mutant R3. , 1994, The Journal of biological chemistry.

[59]  M. Schumacher,et al.  Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices. , 1994, Science.

[60]  J. Navaza,et al.  AMoRe: an automated package for molecular replacement , 1994 .

[61]  C Cruz,et al.  Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. , 1994, Journal of molecular biology.

[62]  G Chang,et al.  Using genetic algorithms for solving heavy-atom sites. , 1994, Acta crystallographica. Section D, Biological crystallography.

[63]  T. Steitz,et al.  Crystal structure of lac repressor core tetramer and its implications for DNA looping. , 1995, Science.

[64]  L. Mueller,et al.  Characterization of a new four‐chain coiled‐coil: Influence of chain length on stability , 1995, Protein science : a publication of the Protein Society.